Wall clock time and date at job start Tue Mar 31 2020 19:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47431 * 299.99914 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00416 * 3 2 1 7 7 C 1.37873 * 120.00546 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99522 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88910 * 303.87902 * 9 7 2 11 11 C 1.55158 * 111.00227 * 179.97438 * 9 7 2 12 12 C 1.54327 * 102.94364 * 206.38226 * 11 9 7 13 13 N 1.47018 * 107.26875 * 22.19470 * 12 11 9 14 14 C 1.34781 * 125.64770 * 181.01966 * 13 12 11 15 15 O 1.21711 * 119.99919 * 180.02562 * 14 13 12 16 16 C 1.46520 * 119.99817 * 0.02562 * 14 13 12 17 17 C 1.36629 * 125.17554 * 180.02562 * 16 14 13 18 18 C 1.36859 * 114.71072 * 180.25139 * 17 16 14 19 19 C 1.36385 * 114.78742 * 359.49594 * 18 17 16 20 20 C 1.47890 * 125.14605 * 180.21095 * 19 18 17 21 21 N 1.34211 * 126.70215 * 0.02562 * 20 19 18 22 22 N 1.28986 * 107.24466 * 179.83252 * 21 20 19 23 23 N 1.28715 * 109.00150 * 0.43919 * 22 21 20 24 24 H 0.97003 * 125.31922 * 179.74562 * 23 22 21 25 25 N 1.28879 * 109.36471 * 359.71678 * 23 22 21 26 26 S 1.75833 * 125.17894 * 359.97438 * 16 14 13 27 27 C 1.47429 * 108.70417 * 1.28490 * 13 12 11 28 28 H 0.96996 * 120.00356 * 359.97438 * 1 2 3 29 29 H 0.96696 * 113.99979 * 56.11871 * 10 9 7 30 30 H 1.09000 * 110.71908 * 88.02210 * 11 9 7 31 31 H 1.08994 * 110.72008 * 324.74988 * 11 9 7 32 32 H 1.08999 * 109.88416 * 262.77300 * 12 11 9 33 33 H 1.09000 * 110.00894 * 141.68405 * 12 11 9 34 34 H 1.08002 * 122.64205 * 359.97424 * 17 16 14 35 35 H 1.07993 * 122.60606 * 179.70756 * 18 17 16 36 36 H 1.09003 * 110.36402 * 94.48228 * 27 13 12 37 37 H 1.09002 * 110.36705 * 216.80187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 8 0.3515 -2.5690 1.1063 11 6 2.2276 -3.7049 -0.0028 12 6 1.3979 -4.8209 -0.6721 13 7 0.3465 -4.1672 -1.4650 14 6 -0.6001 -4.7990 -2.1870 15 8 -1.4240 -4.1532 -2.8080 16 6 -0.6375 -6.2632 -2.2243 17 6 -1.5465 -7.0100 -2.9190 18 6 -1.3863 -8.3638 -2.7988 19 6 -0.3391 -8.7481 -2.0140 20 6 0.0444 -10.1483 -1.7320 21 7 -0.5611 -11.2541 -2.1921 22 7 0.0813 -12.2672 -1.7182 23 7 1.0476 -11.8433 -0.9811 24 1 1.6788 -12.4059 -0.5057 25 7 1.0458 -10.5545 -0.9739 26 16 0.4815 -7.3269 -1.3827 27 6 0.5031 -2.7062 -1.3448 28 1 -0.4850 0.8400 0.0004 29 1 -0.2781 -1.8362 1.1486 30 1 2.4976 -3.9834 1.0159 31 1 3.1172 -3.4802 -0.5909 32 1 0.9467 -5.4555 0.0906 33 1 2.0349 -5.4197 -1.3231 34 1 -2.3325 -6.5668 -3.5126 35 1 -2.0362 -9.0727 -3.2900 36 1 1.0941 -2.3185 -2.1746 37 1 -0.4727 -2.2214 -1.3138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:39 Heat of formation + Delta-G solvation = 58.230757 kcal Electronic energy + Delta-G solvation = -25641.781978 eV Core-core repulsion = 21741.232752 eV Total energy + Delta-G solvation = -3900.549226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.52101 -41.14381 -39.31473 -38.27947 -36.16833 -35.41057 -34.51726 -34.14801 -32.14017 -30.87180 -29.60138 -27.67713 -26.31657 -25.66520 -24.39358 -23.74350 -21.91108 -21.42479 -20.79360 -19.40309 -19.14533 -18.88831 -18.22255 -17.35797 -17.18800 -16.88859 -16.80021 -16.20196 -15.82045 -15.12020 -15.03761 -14.87743 -14.76604 -14.27461 -14.16220 -13.73509 -13.69331 -13.50040 -13.38522 -13.11046 -12.89237 -12.70688 -12.47834 -12.34413 -12.29974 -12.22024 -12.18118 -12.01189 -11.79509 -11.31431 -11.18217 -10.65299 -10.35287 -9.86007 -9.70334 -9.41339 -8.25588 -6.42162 -1.02993 0.04026 0.17657 0.66669 0.76796 1.34859 1.42590 1.46589 1.56719 1.57027 1.92270 2.09944 2.39492 2.55675 3.00651 3.21293 3.43880 3.70510 4.04081 4.07347 4.11324 4.14460 4.25011 4.27805 4.46540 4.48680 4.69452 4.90245 4.97770 5.00035 5.02933 5.21317 5.23212 5.36527 5.43887 5.55701 5.76633 6.02816 6.46839 6.66628 6.97280 7.01990 7.30450 7.39335 8.80386 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002726 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.086545 B =10267.141665 C =10982.521142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.106 4.106 12 C 0.090 3.910 13 N -0.607 5.607 14 C 0.585 3.415 15 O -0.581 6.581 16 C -0.261 4.261 17 C -0.059 4.059 18 C -0.082 4.082 19 C -0.145 4.145 20 C 0.238 3.762 21 N -0.280 5.280 22 N -0.049 5.049 23 N -0.194 5.194 24 H 0.497 0.503 25 N -0.294 5.294 26 S 0.281 5.719 27 C 0.105 3.895 28 H 0.271 0.729 29 H 0.378 0.622 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.054 0.946 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -22.171 -1.494 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.590 4.590 8 H 0.092 0.908 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.144 4.144 12 C -0.033 4.033 13 N -0.338 5.338 14 C 0.375 3.625 15 O -0.464 6.464 16 C -0.383 4.383 17 C -0.093 4.093 18 C -0.116 4.116 19 C -0.267 4.267 20 C -0.043 4.043 21 N -0.153 5.153 22 N -0.044 5.044 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.147 5.147 26 S 0.550 5.450 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.073 0.927 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.526 -22.765 -0.780 23.439 hybrid contribution -1.171 1.722 -0.807 2.233 sum 4.355 -21.043 -1.587 21.547 Atomic orbital electron populations 1.69679 1.07234 1.28497 1.50414 1.25835 0.95727 1.02909 0.93079 0.85386 0.79226 0.78894 0.77387 1.18601 1.21023 1.20701 1.21845 0.94157 0.90938 1.52097 0.90826 1.19889 0.86175 0.93329 0.81352 1.86052 1.51169 1.52615 1.50053 1.22621 0.97415 0.92578 1.01777 1.22314 0.89572 0.96359 0.95061 1.48658 1.29521 1.09027 1.46580 1.17070 0.80321 0.86214 0.78932 1.90781 1.40906 1.67793 1.46877 1.24583 1.06649 0.95967 1.11061 1.20621 0.98376 0.92417 0.97882 1.20508 0.97275 0.95236 0.98576 1.22379 1.04188 0.91979 1.08168 1.22387 0.91693 0.93752 0.96437 1.76178 1.22885 0.94941 1.21335 1.78866 0.98308 1.21810 1.05424 1.47747 1.22432 1.03150 1.31214 0.64336 1.75040 1.22074 0.95635 1.21976 1.84417 1.26774 0.90257 1.43518 1.23027 1.00464 0.77605 1.00688 0.91988 0.77087 0.88964 0.88464 0.90205 0.88650 0.82073 0.80543 0.92740 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.14 10.72 21.45 0.23 -48.91 16 2 C 0.03 1.27 5.30 84.65 0.45 1.72 16 3 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -27.66 8.25 25.60 0.21 -27.45 16 8 H 0.07 3.53 7.76 -2.91 -0.02 3.51 16 9 C 0.23 10.92 0.89 -10.07 -0.01 10.92 16 10 O -0.59 -29.87 13.19 -148.98 -1.97 -31.84 16 11 C -0.11 -3.81 6.12 31.78 0.19 -3.61 16 12 C 0.09 2.91 5.17 86.73 0.45 3.35 16 13 N -0.61 -24.62 3.32 -816.21 -2.71 -27.34 16 14 C 0.58 23.69 7.81 86.40 0.68 24.36 16 15 O -0.58 -27.93 17.06 -4.38 -0.07 -28.01 16 16 C -0.26 -7.97 6.37 24.05 0.15 -7.82 16 17 C -0.06 -1.52 9.88 21.57 0.21 -1.31 16 18 C -0.08 -1.73 10.09 21.51 0.22 -1.52 16 19 C -0.15 -3.23 6.48 24.40 0.16 -3.07 16 20 C 0.24 5.03 8.16 137.10 1.12 6.15 16 21 N -0.28 -5.99 12.51 -52.42 -0.66 -6.64 16 22 N -0.05 -0.82 13.46 37.02 0.50 -0.32 16 23 N -0.19 -2.20 7.90 37.02 0.29 -1.90 16 24 H 0.50 0.46 8.96 -347.50 -3.11 -2.65 16 25 N -0.29 -5.14 12.41 -52.37 -0.65 -5.79 16 26 S 0.28 6.60 18.56 -56.49 -1.05 5.55 16 27 C 0.10 5.02 5.64 86.93 0.49 5.51 16 28 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.38 20.37 6.93 -74.06 -0.51 19.86 16 30 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.10 3.16 8.01 -2.39 -0.02 3.14 16 32 H 0.08 2.39 6.81 -2.39 -0.02 2.38 16 33 H 0.10 2.46 6.96 -2.39 -0.02 2.44 16 34 H 0.16 3.99 8.03 -2.91 -0.02 3.97 16 35 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.05 2.66 8.04 -2.39 -0.02 2.64 16 37 H 0.05 2.55 7.64 -2.39 -0.02 2.53 16 Total: -1.00 -68.38 333.83 -2.20 -70.58 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -2.46 Total: 24.57 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.32 Total: 7.24 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.00 Total: -90.91 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -2.04 Total: -59.84 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.05 Total: 5.55 kcal Total: -68.38 -2.20 -70.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.808 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds