Wall clock time and date at job start Tue Mar 31 2020 19:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47025 * 240.00182 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00386 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21595 * 120.00253 * 0.02562 * 12 11 10 14 14 C 1.47486 * 119.99839 * 180.02562 * 12 11 10 15 15 N 1.31987 * 126.44441 * 0.02669 * 14 12 11 16 16 N 1.28456 * 110.21995 * 179.97438 * 15 14 12 17 17 C 1.40092 * 124.93511 * 180.02562 * 16 15 14 18 18 C 1.38894 * 120.06190 * 359.97329 * 17 16 15 19 19 C 1.38101 * 119.95557 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.08044 * 359.97438 * 19 18 17 21 21 C 1.38374 * 120.12798 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 119.97915 * 180.02562 * 21 20 19 23 23 C 1.38248 * 120.04283 * 359.78881 * 21 20 19 24 24 C 1.36114 * 110.12792 * 359.97438 * 16 15 14 25 25 C 1.35754 * 107.06130 * 359.76469 * 24 16 15 26 26 O 1.36077 * 127.26132 * 180.22430 * 25 24 16 27 27 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 29 29 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 32 32 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 33 33 H 1.08000 * 120.02027 * 0.02562 * 18 17 16 34 34 H 1.07993 * 119.95528 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93673 * 180.02562 * 20 19 18 36 36 H 1.08005 * 120.04278 * 180.25113 * 23 21 20 37 37 H 1.08007 * 126.46577 * 180.02562 * 24 16 15 38 38 H 0.96696 * 114.00031 * 270.16146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.4024 -6.0981 -0.0117 14 6 1.4490 -7.3753 -0.0086 15 7 0.1375 -7.5234 -0.0051 16 7 -0.1685 -8.7710 -0.0079 17 6 -1.4749 -9.2766 -0.0060 18 6 -2.5577 -8.4067 -0.0001 19 6 -3.8447 -8.9076 0.0013 20 6 -4.0566 -10.2741 -0.0038 21 6 -2.9804 -11.1438 -0.0108 22 17 -3.2510 -12.8587 -0.0178 23 6 -1.6899 -10.6481 -0.0171 24 6 0.9612 -9.5302 -0.0143 25 6 2.0157 -8.6753 -0.0206 26 8 3.3377 -8.9977 -0.0324 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5564 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8712 -3.6048 0.8890 31 1 2.8725 -3.6040 -0.8909 32 1 0.5425 -4.9308 -0.0028 33 1 -2.3932 -7.3393 0.0026 34 1 -4.6865 -8.2312 0.0055 35 1 -5.0641 -10.6633 -0.0031 36 1 -0.8499 -11.3270 -0.0267 37 1 1.0095 -10.6092 -0.0182 38 1 3.7265 -9.0957 0.8475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611542009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:59 Heat of formation + Delta-G solvation = 22.902488 kcal Electronic energy + Delta-G solvation = -24638.931742 eV Core-core repulsion = 20702.514110 eV Total energy + Delta-G solvation = -3936.417632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22305 -39.87130 -38.88742 -37.42506 -37.01097 -34.83211 -33.81316 -32.79398 -31.70529 -30.52888 -29.83279 -29.15817 -25.57044 -24.18612 -23.70651 -22.17364 -21.47555 -20.91431 -20.00648 -19.17302 -17.76422 -17.26291 -16.80169 -16.48723 -16.33939 -15.72266 -15.40664 -15.08014 -14.79980 -14.66834 -14.48920 -14.44263 -14.12971 -13.91335 -13.30273 -13.01456 -12.50988 -12.32778 -12.27585 -12.11872 -11.82009 -11.54430 -11.20108 -11.01403 -10.67453 -10.61701 -10.44443 -10.28898 -9.96305 -9.52009 -9.50659 -9.40520 -9.24606 -8.67960 -8.49932 -8.32444 -6.07573 -4.10379 0.14220 0.50048 1.38657 1.58507 1.72800 1.95568 3.01684 3.32643 3.36144 3.38278 3.47028 3.55539 3.89164 4.08649 4.32144 4.35751 4.40262 4.43441 4.56714 4.75473 4.87985 4.95273 5.12333 5.29357 5.33367 5.45132 5.60315 5.71268 5.89264 5.93564 6.34170 6.35677 6.47823 6.74142 6.88441 7.43504 7.49731 7.55342 7.63715 7.90542 8.02420 8.28871 8.59004 8.95275 9.54118 11.04019 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002239 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.036196 B =12500.337057 C =14245.421096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.705 5.705 12 C 0.591 3.409 13 O -0.530 6.530 14 C -0.008 4.008 15 N -0.243 5.243 16 N -0.232 5.232 17 C 0.157 3.843 18 C -0.103 4.103 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.014 4.014 22 Cl -0.056 7.056 23 C -0.123 4.123 24 C -0.044 4.044 25 C 0.059 3.941 26 O -0.450 6.450 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.190 0.810 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -27.072 1.635 28.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.355 5.355 12 C 0.373 3.627 13 O -0.405 6.405 14 C -0.171 4.171 15 N -0.077 5.077 16 N -0.015 5.015 17 C 0.066 3.934 18 C -0.123 4.123 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.042 4.042 22 Cl -0.027 7.027 23 C -0.144 4.144 24 C -0.184 4.184 25 C 0.004 3.996 26 O -0.256 6.256 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.207 0.793 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.847 -26.468 1.026 28.259 hybrid contribution 0.739 0.198 0.464 0.895 sum -9.108 -26.270 1.490 27.844 Atomic orbital electron populations 1.69945 1.06086 1.26958 1.50296 1.24998 0.94900 0.99397 0.95006 0.86565 0.79505 0.82633 0.78784 1.20099 1.21275 1.20113 1.21010 0.93230 0.90338 1.51454 0.92230 1.19324 0.94195 0.90978 0.97972 1.21817 0.96130 0.81074 1.01079 1.46229 1.10978 1.06008 1.72271 1.16767 0.86421 0.81643 0.77871 1.90808 1.12373 1.86666 1.50630 1.22904 0.89366 0.96342 1.08480 1.73669 1.15894 0.99406 1.18735 1.42135 1.04524 1.03568 1.51274 1.17376 0.80727 0.92100 1.03220 1.21209 0.90744 1.01380 0.98967 1.21122 0.96797 0.94698 0.97363 1.21244 0.98784 0.92893 1.00176 1.20526 0.93703 0.85742 1.04198 1.98402 1.96610 1.10883 1.96811 1.20613 0.97093 0.92920 1.03788 1.22912 0.85169 0.99287 1.11019 1.18083 0.85302 0.89333 1.06928 1.84904 1.16880 1.90562 1.33247 0.92805 0.95845 0.95852 0.92216 0.92198 0.76220 0.82949 0.83426 0.84000 0.83782 0.79256 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 11 N -0.71 -13.35 5.55 -61.36 -0.34 -13.69 16 12 C 0.59 11.13 7.82 -12.49 -0.10 11.03 16 13 O -0.53 -11.40 16.53 3.04 0.05 -11.35 16 14 C -0.01 -0.12 7.13 -82.66 -0.59 -0.71 16 15 N -0.24 -3.44 10.84 33.46 0.36 -3.07 16 16 N -0.23 -2.67 3.52 -10.40 -0.04 -2.70 16 17 C 0.16 1.46 6.66 -83.62 -0.56 0.91 16 18 C -0.10 -0.88 9.59 -39.39 -0.38 -1.25 16 19 C -0.08 -0.49 10.04 -39.61 -0.40 -0.89 16 20 C -0.11 -0.65 9.83 -39.51 -0.39 -1.04 16 21 C -0.01 -0.10 6.32 -39.53 -0.25 -0.35 16 22 Cl -0.06 -0.36 28.95 -51.86 -1.50 -1.86 16 23 C -0.12 -0.90 9.21 -39.36 -0.36 -1.26 16 24 C -0.04 -0.46 10.81 -16.54 -0.18 -0.64 16 25 C 0.06 0.79 7.35 -39.10 -0.29 0.50 16 26 O -0.45 -5.74 13.20 -22.23 -0.29 -6.03 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.40 7.01 8.19 -40.82 -0.33 6.67 16 33 H 0.15 1.38 7.64 -52.49 -0.40 0.98 16 34 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.80 6.65 -52.48 -0.35 0.45 16 37 H 0.19 1.20 6.96 -52.48 -0.37 0.83 16 38 H 0.39 3.20 9.07 45.56 0.41 3.61 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -34.15 356.00 -7.86 -42.00 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.11 Total: 4.58 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.06 Total: -4.21 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.72 Total: -44.93 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.24 Total: -17.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.15 -7.86 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611542009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.906 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds