Wall clock time and date at job start Tue Mar 31 2020 19:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47025 * 240.00182 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00386 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21595 * 120.00253 * 0.02562 * 12 11 10 14 14 C 1.47486 * 119.99839 * 180.02562 * 12 11 10 15 15 N 1.31987 * 126.44441 * 0.02669 * 14 12 11 16 16 N 1.28456 * 110.21995 * 179.97438 * 15 14 12 17 17 C 1.40092 * 124.93511 * 180.02562 * 16 15 14 18 18 C 1.38894 * 120.06190 * 359.97329 * 17 16 15 19 19 C 1.38101 * 119.95557 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.08044 * 359.97438 * 19 18 17 21 21 C 1.38374 * 120.12798 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 119.97915 * 180.02562 * 21 20 19 23 23 C 1.38248 * 120.04283 * 359.78881 * 21 20 19 24 24 C 1.36114 * 110.12792 * 359.97438 * 16 15 14 25 25 C 1.35754 * 107.06130 * 359.76469 * 24 16 15 26 26 O 1.36077 * 127.26132 * 180.22430 * 25 24 16 27 27 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 29 29 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 32 32 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 33 33 H 1.08000 * 120.02027 * 0.02562 * 18 17 16 34 34 H 1.07993 * 119.95528 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93673 * 180.02562 * 20 19 18 36 36 H 1.08005 * 120.04278 * 180.25113 * 23 21 20 37 37 H 1.08007 * 126.46577 * 180.02562 * 24 16 15 38 38 H 0.96696 * 114.00031 * 270.16146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.4024 -6.0981 -0.0117 14 6 1.4490 -7.3753 -0.0086 15 7 0.1375 -7.5234 -0.0051 16 7 -0.1685 -8.7710 -0.0079 17 6 -1.4749 -9.2766 -0.0060 18 6 -2.5577 -8.4067 -0.0001 19 6 -3.8447 -8.9076 0.0013 20 6 -4.0566 -10.2741 -0.0038 21 6 -2.9804 -11.1438 -0.0108 22 17 -3.2510 -12.8587 -0.0178 23 6 -1.6899 -10.6481 -0.0171 24 6 0.9612 -9.5302 -0.0143 25 6 2.0157 -8.6753 -0.0206 26 8 3.3377 -8.9977 -0.0324 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5564 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8712 -3.6048 0.8890 31 1 2.8725 -3.6040 -0.8909 32 1 0.5425 -4.9308 -0.0028 33 1 -2.3932 -7.3393 0.0026 34 1 -4.6865 -8.2312 0.0055 35 1 -5.0641 -10.6633 -0.0031 36 1 -0.8499 -11.3270 -0.0267 37 1 1.0095 -10.6092 -0.0182 38 1 3.7265 -9.0957 0.8475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611542009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:58 Heat of formation + Delta-G solvation = -1.064833 kcal Electronic energy + Delta-G solvation = -24639.971043 eV Core-core repulsion = 20702.514110 eV Total energy + Delta-G solvation = -3937.456933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.16786 -40.71958 -40.15351 -38.34029 -37.55018 -36.61590 -34.93323 -34.50247 -32.33229 -31.86758 -30.98463 -30.25700 -27.19166 -25.52774 -24.41343 -23.26981 -22.66179 -22.25309 -21.30888 -20.02903 -18.72577 -18.56559 -18.28889 -17.56898 -17.26873 -16.72465 -16.50563 -16.37512 -16.27957 -16.05641 -15.47342 -15.37391 -14.89037 -14.85491 -14.71143 -14.45804 -14.28577 -13.25419 -13.10515 -12.99618 -12.93832 -12.71442 -12.55577 -12.54960 -12.25967 -12.03863 -11.75908 -11.68215 -11.48322 -11.23792 -11.09951 -10.60406 -10.29430 -10.12205 -10.03037 -9.40268 -8.23613 -6.34477 -0.55386 -0.03492 0.46784 0.78802 0.93718 1.21539 1.42228 1.45046 1.52866 2.09015 2.15557 2.43100 2.46366 2.89275 3.10876 3.38073 3.62700 3.65153 3.79640 3.87813 3.97546 4.19785 4.23520 4.38254 4.46594 4.48522 4.58156 4.81088 4.83992 4.95310 5.06332 5.19020 5.19848 5.38532 5.45248 5.55701 5.71974 5.77435 6.14507 6.34933 6.62414 6.72004 6.78189 7.08532 7.34561 8.88285 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.002239 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.036196 B =12500.337057 C =14245.421096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.024 3.976 10 C 0.140 3.860 11 N -0.704 5.704 12 C 0.593 3.407 13 O -0.563 6.563 14 C -0.045 4.045 15 N -0.254 5.254 16 N -0.222 5.222 17 C 0.126 3.874 18 C -0.116 4.116 19 C -0.078 4.078 20 C -0.100 4.100 21 C -0.021 4.021 22 Cl -0.050 7.050 23 C -0.114 4.114 24 C -0.020 4.020 25 C 0.042 3.958 26 O -0.463 6.463 27 H 0.266 0.734 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.410 0.590 33 H 0.139 0.861 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.235 0.765 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -28.908 1.728 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.354 5.354 12 C 0.378 3.622 13 O -0.440 6.440 14 C -0.205 4.205 15 N -0.089 5.089 16 N -0.005 5.005 17 C 0.036 3.964 18 C -0.136 4.136 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.049 4.049 22 Cl -0.021 7.021 23 C -0.135 4.135 24 C -0.160 4.160 25 C -0.013 4.013 26 O -0.271 6.271 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.157 0.843 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.251 0.749 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.923 -28.323 1.130 30.377 hybrid contribution 0.878 0.600 0.445 1.153 sum -10.046 -27.723 1.575 29.529 Atomic orbital electron populations 1.70059 1.07597 1.28091 1.50869 1.25906 0.95830 1.03190 0.94367 0.85466 0.78266 0.77947 0.79173 1.19324 1.20584 1.19230 1.21427 0.93678 0.91709 1.51724 0.92016 1.19126 0.94195 0.91759 0.96309 1.21362 0.95115 0.81422 1.00432 1.46054 1.11182 1.05422 1.72768 1.17107 0.86211 0.82378 0.76504 1.90768 1.13809 1.87359 1.52095 1.22476 0.90307 0.95691 1.12068 1.73590 1.15103 1.01121 1.19125 1.42413 1.05809 1.02915 1.49397 1.17640 0.79755 0.93116 1.05925 1.21310 0.91828 1.00903 0.99526 1.21380 0.96425 0.95400 0.96404 1.21585 0.99807 0.92539 0.97960 1.20658 0.93780 0.86226 1.04228 1.98411 1.96548 1.10351 1.96773 1.20781 0.98123 0.92135 1.02447 1.23467 0.83541 1.00725 1.08303 1.18234 0.86131 0.88836 1.08102 1.84852 1.16926 1.90364 1.34985 0.92516 0.97508 0.97343 0.92685 0.92994 0.75421 0.84308 0.81115 0.81578 0.81908 0.74860 0.73490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.14 6.33 5.61 86.38 0.48 6.82 16 11 N -0.70 -27.89 5.55 -466.31 -2.59 -30.48 16 12 C 0.59 23.24 7.82 86.68 0.68 23.92 16 13 O -0.56 -25.13 16.53 -1.87 -0.03 -25.16 16 14 C -0.04 -1.45 7.13 42.45 0.30 -1.15 16 15 N -0.25 -7.24 10.84 -48.05 -0.52 -7.76 16 16 N -0.22 -4.86 3.52 -186.83 -0.66 -5.52 16 17 C 0.13 2.15 6.66 38.12 0.25 2.40 16 18 C -0.12 -1.86 9.59 22.39 0.21 -1.64 16 19 C -0.08 -0.77 10.04 22.25 0.22 -0.55 16 20 C -0.10 -0.85 9.83 22.31 0.22 -0.63 16 21 C -0.02 -0.23 6.32 22.30 0.14 -0.09 16 22 Cl -0.05 -0.49 28.95 -2.72 -0.08 -0.57 16 23 C -0.11 -1.36 9.21 22.41 0.21 -1.15 16 24 C -0.02 -0.38 10.81 83.45 0.90 0.52 16 25 C 0.04 1.12 7.35 22.58 0.17 1.28 16 26 O -0.46 -11.61 13.20 -92.28 -1.22 -12.83 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.41 15.02 8.19 -92.70 -0.76 14.26 16 33 H 0.14 2.57 7.64 -2.91 -0.02 2.55 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.16 1.22 6.65 -2.91 -0.02 1.20 16 37 H 0.24 2.02 6.96 -2.91 -0.02 2.00 16 38 H 0.41 6.52 9.07 -74.06 -0.67 5.85 16 Total: -1.00 -74.98 356.00 1.57 -73.42 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.29 Total: 16.53 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.64 Total: 1.07 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -3.48 Total: -98.52 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.25 Total: -37.99 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -74.98 1.57 -73.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611542009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.352 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds