Wall clock time and date at job start Tue Mar 31 2020 18:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00281 * 2 1 4 4 H 1.48502 * 109.46738 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46987 * 300.00055 * 3 2 1 6 6 H 1.48501 * 109.47072 * 59.99913 * 3 2 1 7 7 C 1.37884 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99398 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47027 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47325 * 180.02562 * 10 9 7 12 12 C 1.35891 * 117.00215 * 180.02562 * 11 10 9 13 13 C 1.38815 * 120.02226 * 0.02562 * 12 11 10 14 14 C 1.38168 * 120.08772 * 179.97438 * 13 12 11 15 15 C 1.38157 * 120.13017 * 359.73067 * 14 13 12 16 16 C 1.38903 * 120.03739 * 0.54331 * 15 14 13 17 17 N 1.39848 * 120.04835 * 179.72652 * 16 15 14 18 18 C 1.34773 * 120.00280 * 214.82569 * 17 16 15 19 19 O 1.21607 * 119.99794 * 355.64968 * 18 17 16 20 20 C 1.47478 * 120.00159 * 175.65584 * 18 17 16 21 21 N 1.31177 * 122.58427 * 359.70844 * 20 18 17 22 22 S 1.56191 * 108.93875 * 179.85729 * 21 20 18 23 23 N 1.69337 * 97.40235 * 0.35028 * 22 21 20 24 24 C 1.30919 * 106.29859 * 359.79716 * 23 22 21 25 25 O 1.35802 * 123.73590 * 179.97438 * 24 23 22 26 26 C 1.38580 * 120.02206 * 179.97438 * 12 11 10 27 27 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47128 * 60.00079 * 9 7 2 29 29 H 1.08997 * 109.47146 * 299.99671 * 9 7 2 30 30 H 1.09003 * 109.47086 * 60.00073 * 10 9 7 31 31 H 1.09003 * 109.47138 * 300.00243 * 10 9 7 32 32 H 1.07998 * 119.95080 * 359.95688 * 13 12 11 33 33 H 1.08001 * 119.92910 * 180.02562 * 14 13 12 34 34 H 1.07998 * 119.97925 * 180.29752 * 15 14 13 35 35 H 0.97001 * 120.00006 * 35.08605 * 17 16 15 36 36 H 0.96696 * 114.00217 * 270.04525 * 25 24 23 37 37 H 1.08003 * 120.06137 * 0.04424 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 8 1.5305 -4.8997 0.0020 12 6 2.2705 -6.0394 0.0024 13 6 3.6568 -5.9674 0.0028 14 6 4.4106 -7.1254 0.0037 15 6 3.7875 -8.3584 0.0099 16 6 2.4007 -8.4367 0.0037 17 7 1.7698 -9.6848 0.0041 18 6 0.6138 -9.8558 -0.6673 19 8 0.0782 -8.9069 -1.2073 20 6 -0.0018 -11.1936 -0.7470 21 7 0.5346 -12.2524 -0.1886 22 16 -0.3779 -13.4892 -0.4665 23 7 -1.5627 -12.6871 -1.3722 24 6 -1.1960 -11.4315 -1.4269 25 8 -1.9003 -10.4677 -2.0743 26 6 1.6418 -7.2744 0.0034 27 1 -0.4850 0.8401 0.0004 28 1 0.6238 -2.5575 -0.8880 29 1 0.6246 -2.5563 0.8920 30 1 2.8723 -3.6041 0.8910 31 1 2.8710 -3.6049 -0.8890 32 1 4.1467 -5.0049 0.0021 33 1 5.4890 -7.0663 0.0045 34 1 4.3791 -9.2620 0.0154 35 1 2.1622 -10.4265 0.4907 36 1 -1.6505 -10.3538 -3.0015 37 1 0.5633 -7.3324 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630534688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:13 Heat of formation + Delta-G solvation = -21.286257 kcal Electronic energy + Delta-G solvation = -24706.046189 eV Core-core repulsion = 20769.756096 eV Total energy + Delta-G solvation = -3936.290094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70019 -40.27735 -39.08417 -37.51868 -37.16705 -34.73917 -33.44169 -33.31826 -30.89777 -29.84336 -29.10489 -27.43749 -25.06073 -23.81854 -22.57465 -22.01097 -21.09763 -20.38493 -20.01304 -18.92053 -18.35987 -17.75484 -16.76343 -16.40041 -16.10657 -15.64286 -15.50029 -15.29140 -15.03908 -14.81384 -14.51263 -14.17359 -14.00080 -13.47339 -13.04977 -12.75064 -12.32414 -12.29690 -11.84552 -11.75225 -11.68376 -11.64732 -11.50745 -11.44498 -10.94442 -10.85420 -10.58265 -10.43397 -10.10716 -9.82781 -9.63550 -9.62867 -9.26317 -8.44334 -8.33204 -7.85345 -6.08248 -4.12863 -0.41885 0.45474 0.73564 0.84644 1.41127 1.60860 2.50498 2.63527 3.18465 3.27878 3.34798 3.38368 3.78539 3.93565 4.19675 4.39923 4.43792 4.49043 4.97045 5.15952 5.28122 5.33168 5.41211 5.59501 5.67322 5.79241 6.03353 6.05615 6.21551 6.31798 6.49702 6.58648 6.74001 6.79242 6.90911 7.05908 7.53446 7.67228 7.67623 7.82954 8.08022 8.25909 8.93023 9.51279 11.03349 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002079 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.219387 B =13461.948354 C =14591.664745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.311 6.311 12 C 0.164 3.836 13 C -0.222 4.222 14 C -0.062 4.062 15 C -0.190 4.190 16 C 0.171 3.829 17 N -0.650 5.650 18 C 0.595 3.405 19 O -0.478 6.478 20 C -0.005 4.005 21 N -0.490 5.490 22 S 0.615 5.385 23 N -0.512 5.512 24 C 0.324 3.676 25 O -0.425 6.425 26 C -0.162 4.162 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.418 0.582 36 H 0.415 0.585 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 -30.269 -1.466 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.116 3.884 13 C -0.241 4.241 14 C -0.080 4.080 15 C -0.211 4.211 16 C 0.078 3.922 17 N -0.296 5.296 18 C 0.375 3.625 19 O -0.349 6.349 20 C -0.188 4.188 21 N -0.338 5.338 22 S 0.654 5.346 23 N -0.357 5.357 24 C 0.105 3.895 25 O -0.232 6.232 26 C -0.182 4.182 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.275 0.725 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.282 -31.339 -0.897 31.524 hybrid contribution 0.983 2.172 -0.554 2.447 sum 4.265 -29.168 -1.451 29.513 Atomic orbital electron populations 1.69992 1.06098 1.26841 1.49750 1.25002 0.94907 0.99398 0.94968 0.86432 0.79960 0.83288 0.77700 1.19648 1.20854 1.20859 1.21005 0.93061 0.90181 1.52114 0.92300 1.19138 0.94206 0.88984 0.98976 1.23362 0.97111 0.80737 0.99720 1.86200 1.36471 1.13111 1.86587 1.18962 0.89847 0.87356 0.92255 1.21431 0.93123 1.00025 1.09507 1.20664 0.99466 0.91150 0.96768 1.20623 0.91915 0.98399 1.10136 1.17241 0.91055 0.83553 1.00357 1.43093 1.23478 1.12267 1.50748 1.16814 0.80899 0.85188 0.79587 1.90958 1.60553 1.38831 1.44555 1.22342 0.96662 0.94955 1.04840 1.72249 1.33084 1.05809 1.22634 1.82469 1.00535 1.14960 1.36599 1.76768 1.27022 1.09368 1.22563 1.20056 0.88329 0.85975 0.95094 1.84953 1.59156 1.49362 1.29725 1.20423 1.01525 0.88528 1.07757 0.92761 0.95307 0.95354 0.93019 0.93011 0.84929 0.85552 0.85964 0.74494 0.72456 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.06 1.40 4.68 37.16 0.17 1.58 16 11 O -0.31 -6.63 10.13 -19.40 -0.20 -6.83 16 12 C 0.16 2.95 6.68 -39.24 -0.26 2.69 16 13 C -0.22 -3.39 9.04 -39.39 -0.36 -3.75 16 14 C -0.06 -0.76 10.03 -39.64 -0.40 -1.15 16 15 C -0.19 -2.18 9.96 -39.37 -0.39 -2.58 16 16 C 0.17 2.27 6.29 -83.74 -0.53 1.75 16 17 N -0.65 -7.01 5.33 -10.84 -0.06 -7.07 16 18 C 0.59 7.12 7.65 -12.50 -0.10 7.02 16 19 O -0.48 -7.25 13.16 -13.02 -0.17 -7.43 16 20 C 0.00 -0.05 6.69 -83.93 -0.56 -0.61 16 21 N -0.49 -3.81 10.84 24.02 0.26 -3.55 16 22 S 0.61 3.55 24.20 -107.50 -2.60 0.95 16 23 N -0.51 -4.51 12.18 28.50 0.35 -4.16 16 24 C 0.32 3.12 8.00 -17.48 -0.14 2.98 16 25 O -0.43 -4.09 12.33 -37.41 -0.46 -4.55 16 26 C -0.16 -2.68 8.63 -39.24 -0.34 -3.02 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 31 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.13 1.97 6.29 -52.49 -0.33 1.64 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.42 3.35 8.32 -40.82 -0.34 3.01 16 36 H 0.42 2.04 9.06 45.56 0.41 2.45 16 37 H 0.15 2.62 6.23 -52.48 -0.33 2.30 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -34.40 343.54 -8.06 -42.46 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -2.61 Total: 2.68 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.46 Total: -8.06 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.29 Total: -40.76 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.83 Total: -18.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -2.60 Total: 0.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.40 -8.06 -42.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630534688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds