Wall clock time and date at job start Tue Mar 31 2020 18:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00281 * 2 1 4 4 H 1.48502 * 109.46738 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46987 * 300.00055 * 3 2 1 6 6 H 1.48501 * 109.47072 * 59.99913 * 3 2 1 7 7 C 1.37884 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99398 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47027 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47325 * 180.02562 * 10 9 7 12 12 C 1.35891 * 117.00215 * 180.02562 * 11 10 9 13 13 C 1.38815 * 120.02226 * 0.02562 * 12 11 10 14 14 C 1.38168 * 120.08772 * 179.97438 * 13 12 11 15 15 C 1.38157 * 120.13017 * 359.73067 * 14 13 12 16 16 C 1.38903 * 120.03739 * 0.54331 * 15 14 13 17 17 N 1.39848 * 120.04835 * 179.72652 * 16 15 14 18 18 C 1.34773 * 120.00280 * 214.82569 * 17 16 15 19 19 O 1.21607 * 119.99794 * 355.64968 * 18 17 16 20 20 C 1.47478 * 120.00159 * 175.65584 * 18 17 16 21 21 N 1.31177 * 122.58427 * 359.70844 * 20 18 17 22 22 S 1.56191 * 108.93875 * 179.85729 * 21 20 18 23 23 N 1.69337 * 97.40235 * 0.35028 * 22 21 20 24 24 C 1.30919 * 106.29859 * 359.79716 * 23 22 21 25 25 O 1.35802 * 123.73590 * 179.97438 * 24 23 22 26 26 C 1.38580 * 120.02206 * 179.97438 * 12 11 10 27 27 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47128 * 60.00079 * 9 7 2 29 29 H 1.08997 * 109.47146 * 299.99671 * 9 7 2 30 30 H 1.09003 * 109.47086 * 60.00073 * 10 9 7 31 31 H 1.09003 * 109.47138 * 300.00243 * 10 9 7 32 32 H 1.07998 * 119.95080 * 359.95688 * 13 12 11 33 33 H 1.08001 * 119.92910 * 180.02562 * 14 13 12 34 34 H 1.07998 * 119.97925 * 180.29752 * 15 14 13 35 35 H 0.97001 * 120.00006 * 35.08605 * 17 16 15 36 36 H 0.96696 * 114.00217 * 270.04525 * 25 24 23 37 37 H 1.08003 * 120.06137 * 0.04424 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 8 1.5305 -4.8997 0.0020 12 6 2.2705 -6.0394 0.0024 13 6 3.6568 -5.9674 0.0028 14 6 4.4106 -7.1254 0.0037 15 6 3.7875 -8.3584 0.0099 16 6 2.4007 -8.4367 0.0037 17 7 1.7698 -9.6848 0.0041 18 6 0.6138 -9.8558 -0.6673 19 8 0.0782 -8.9069 -1.2073 20 6 -0.0018 -11.1936 -0.7470 21 7 0.5346 -12.2524 -0.1886 22 16 -0.3779 -13.4892 -0.4665 23 7 -1.5627 -12.6871 -1.3722 24 6 -1.1960 -11.4315 -1.4269 25 8 -1.9003 -10.4677 -2.0743 26 6 1.6418 -7.2744 0.0034 27 1 -0.4850 0.8401 0.0004 28 1 0.6238 -2.5575 -0.8880 29 1 0.6246 -2.5563 0.8920 30 1 2.8723 -3.6041 0.8910 31 1 2.8710 -3.6049 -0.8890 32 1 4.1467 -5.0049 0.0021 33 1 5.4890 -7.0663 0.0045 34 1 4.3791 -9.2620 0.0154 35 1 2.1622 -10.4265 0.4907 36 1 -1.6505 -10.3538 -3.0015 37 1 0.5633 -7.3324 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630534688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:12 Heat of formation + Delta-G solvation = -49.211655 kcal Electronic energy + Delta-G solvation = -24707.257125 eV Core-core repulsion = 20769.756096 eV Total energy + Delta-G solvation = -3937.501030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47085 -41.30870 -40.26859 -38.41457 -38.19677 -35.83667 -35.37455 -34.09656 -32.59726 -31.15110 -30.38006 -28.22817 -26.98806 -24.84564 -23.59182 -23.48812 -22.27729 -21.52580 -20.70154 -19.86639 -19.33426 -18.76806 -18.29132 -17.49096 -17.23873 -16.95764 -16.83834 -16.76044 -16.42182 -15.98092 -15.64394 -15.13369 -14.68593 -14.47310 -14.46197 -14.32982 -14.27671 -13.37515 -13.23726 -12.91834 -12.77405 -12.65947 -12.55460 -12.41484 -12.30901 -12.21007 -12.14884 -11.80074 -11.59558 -11.40977 -11.30509 -11.09934 -10.63043 -10.22074 -9.46946 -9.04851 -8.26280 -6.40329 -1.08402 -0.16629 0.03678 0.14914 0.41709 0.48463 1.41210 1.42772 1.56246 1.65504 1.74524 2.28109 2.48814 2.56745 2.80626 3.08102 3.39452 3.75442 3.79083 3.92007 4.16010 4.21222 4.24747 4.28401 4.43168 4.54903 4.67984 4.75365 4.97593 5.23484 5.24846 5.31925 5.40550 5.46288 5.51015 5.68201 5.86464 6.06892 6.17784 6.29718 6.56702 6.75058 6.81845 7.29890 8.87334 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002079 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.219387 B =13461.948354 C =14591.664745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.345 6.345 12 C 0.124 3.876 13 C -0.229 4.229 14 C -0.052 4.052 15 C -0.168 4.168 16 C 0.173 3.827 17 N -0.638 5.638 18 C 0.594 3.406 19 O -0.520 6.520 20 C -0.025 4.025 21 N -0.491 5.491 22 S 0.715 5.285 23 N -0.540 5.540 24 C 0.316 3.684 25 O -0.446 6.446 26 C -0.183 4.183 27 H 0.266 0.734 28 H -0.005 1.005 29 H -0.004 1.004 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.433 0.567 36 H 0.429 0.571 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -32.685 -1.074 33.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.802 3.198 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.259 6.259 12 C 0.078 3.922 13 C -0.248 4.248 14 C -0.070 4.070 15 C -0.188 4.188 16 C 0.079 3.921 17 N -0.285 5.285 18 C 0.376 3.624 19 O -0.394 6.394 20 C -0.205 4.205 21 N -0.342 5.342 22 S 0.754 5.246 23 N -0.387 5.387 24 C 0.100 3.900 25 O -0.255 6.255 26 C -0.204 4.204 27 H 0.075 0.925 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.274 0.726 36 H 0.292 0.708 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.680 -33.792 -0.508 34.450 hybrid contribution -0.084 2.554 -0.640 2.635 sum 6.596 -31.238 -1.149 31.947 Atomic orbital electron populations 1.70148 1.08187 1.28161 1.50751 1.26108 0.95843 1.03897 0.94192 0.85190 0.79118 0.77641 0.77806 1.17829 1.20325 1.20270 1.21430 0.93916 0.90800 1.51910 0.90772 1.18989 0.94645 0.91677 0.95816 1.22903 0.95350 0.79890 1.00824 1.86102 1.37782 1.13918 1.88086 1.19244 0.91203 0.86271 0.95457 1.21574 0.91860 1.01626 1.09741 1.21139 1.01279 0.90023 0.94538 1.21118 0.90973 0.99967 1.06749 1.17362 0.91933 0.83320 0.99458 1.43003 1.23166 1.11810 1.50539 1.17133 0.80687 0.85745 0.78790 1.90946 1.61634 1.40529 1.46282 1.21804 0.97289 0.94298 1.07128 1.72019 1.33748 1.06153 1.22297 1.82176 0.97549 1.12149 1.32748 1.76628 1.28781 1.09281 1.23999 1.20014 0.88421 0.86160 0.95397 1.84891 1.59638 1.49893 1.31081 1.20370 1.00671 0.89691 1.09643 0.92481 0.98665 0.98531 0.91648 0.91886 0.84763 0.81448 0.81484 0.72621 0.70772 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.03 1.47 5.34 29.85 0.16 1.63 16 10 C 0.08 3.83 4.68 71.98 0.34 4.17 16 11 O -0.34 -15.79 10.13 -92.33 -0.94 -16.72 16 12 C 0.12 4.67 6.68 22.49 0.15 4.82 16 13 C -0.23 -6.79 9.04 22.39 0.20 -6.59 16 14 C -0.05 -1.08 10.03 22.23 0.22 -0.86 16 15 C -0.17 -3.23 9.96 22.41 0.22 -3.00 16 16 C 0.17 4.42 6.29 38.16 0.24 4.66 16 17 N -0.64 -13.03 5.33 -306.45 -1.63 -14.66 16 18 C 0.59 14.43 7.65 86.68 0.66 15.10 16 19 O -0.52 -16.89 13.16 13.44 0.18 -16.72 16 20 C -0.03 -0.48 6.69 41.97 0.28 -0.19 16 21 N -0.49 -6.54 10.84 -77.91 -0.84 -7.38 16 22 S 0.71 6.26 24.20 -56.49 -1.37 4.90 16 23 N -0.54 -8.85 12.18 -177.22 -2.16 -11.01 16 24 C 0.32 6.08 8.00 85.12 0.68 6.76 16 25 O -0.45 -9.14 12.33 -73.84 -0.91 -10.05 16 26 C -0.18 -6.38 8.63 22.49 0.19 -6.18 16 27 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.07 2.73 7.66 -2.39 -0.02 2.71 16 31 H 0.06 2.66 7.66 -2.39 -0.02 2.64 16 32 H 0.13 3.86 6.29 -2.91 -0.02 3.84 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.43 5.85 8.32 -92.71 -0.77 5.08 16 36 H 0.43 4.86 9.06 -74.06 -0.67 4.19 16 37 H 0.12 4.70 6.23 -2.91 -0.02 4.69 16 Total: -1.00 -79.97 343.54 -1.58 -81.55 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -0.27 Total: 12.15 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.05 Total: -10.29 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -4.35 Total: -90.92 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.67 Total: -43.49 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.37 Total: 4.90 kcal Total: -79.97 -1.58 -81.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630534688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.339 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds