Wall clock time and date at job start Tue Mar 31 2020 18:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34766 * 124.18123 * 2 1 4 4 O 1.21240 * 127.15441 * 359.92441 * 3 2 1 5 5 C 1.51582 * 105.68806 * 179.74645 * 3 2 1 6 6 N 1.47309 * 103.59180 * 0.32842 * 5 3 2 7 7 N 1.40099 * 126.69177 * 179.97438 * 6 5 3 8 8 C 1.34774 * 120.00096 * 254.71216 * 7 6 5 9 9 O 1.21549 * 120.00282 * 0.02562 * 8 7 6 10 10 C 1.47870 * 119.99852 * 179.97438 * 8 7 6 11 11 C 1.39674 * 120.09881 * 359.97438 * 10 8 7 12 12 C 1.38037 * 120.03783 * 179.97438 * 11 10 8 13 13 C 1.38181 * 120.24181 * 0.04233 * 12 11 10 14 14 C 1.39182 * 120.20571 * 359.97435 * 13 12 11 15 15 S 1.76198 * 120.02332 * 179.97438 * 14 13 12 16 16 C 1.76195 * 100.00356 * 265.53438 * 15 14 13 17 17 H 1.08003 * 119.99537 * 5.11819 * 16 15 14 18 18 C 1.38724 * 120.00176 * 185.12023 * 16 15 14 19 19 N 1.31626 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46969 * 119.99983 * 20 18 16 23 23 H 1.48497 * 109.46951 * 239.99765 * 20 18 16 24 24 C 1.38879 * 119.95412 * 0.02562 * 14 13 12 25 25 C 1.33797 * 124.17632 * 179.97438 * 2 1 3 26 26 O 1.21539 * 123.77136 * 0.03315 * 25 2 1 27 27 H 1.09006 * 109.47301 * 270.04726 * 1 2 3 28 28 H 1.09005 * 109.47256 * 30.04072 * 1 2 3 29 29 H 1.08996 * 109.47520 * 150.03931 * 1 2 3 30 30 H 1.09005 * 110.68736 * 241.76246 * 5 3 2 31 31 H 1.08998 * 110.50839 * 118.81298 * 5 3 2 32 32 H 0.97006 * 119.99785 * 74.71496 * 7 6 5 33 33 H 1.08000 * 119.98263 * 0.02562 * 11 10 8 34 34 H 1.07996 * 119.88354 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.89981 * 180.02562 * 13 12 11 36 36 H 0.96998 * 119.99682 * 180.02562 * 19 18 16 37 37 H 1.07996 * 120.11731 * 179.72263 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2635 -0.0013 5 6 3.6596 0.6341 0.0065 6 7 3.5338 -0.8336 0.0014 7 7 4.5816 -1.7636 0.0039 8 6 4.8869 -2.4378 -1.1224 9 8 4.2536 -2.2386 -2.1406 10 6 5.9932 -3.4190 -1.1199 11 6 6.7234 -3.6483 0.0485 12 6 7.7555 -4.5649 0.0496 13 6 8.0717 -5.2583 -1.1030 14 6 7.3510 -5.0375 -2.2731 15 16 7.7587 -5.9238 -3.7403 16 6 8.8396 -4.7636 -4.5084 17 1 9.1178 -3.8587 -3.9886 18 6 9.3332 -5.0124 -5.7807 19 7 8.9937 -6.1150 -6.4144 20 14 10.4786 -3.7819 -6.5953 21 1 10.7020 -2.6332 -5.6811 22 1 11.7773 -4.4372 -6.8941 23 1 9.8666 -3.2970 -7.8584 24 6 6.3109 -4.1172 -2.2836 25 6 2.2166 -1.1069 0.0005 26 8 1.7602 -2.2334 0.0004 27 1 -0.3634 0.0008 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8903 -0.5132 30 1 4.1746 0.9717 0.9059 31 1 4.1811 0.9773 -0.8870 32 1 5.0872 -1.9224 0.8164 33 1 6.4798 -3.1088 0.9518 34 1 8.3181 -4.7406 0.9545 35 1 8.8800 -5.9745 -1.0958 36 1 9.3392 -6.2891 -7.3038 37 1 5.7529 -3.9405 -3.1911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630817499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:57 Heat of formation + Delta-G solvation = -0.672456 kcal Electronic energy + Delta-G solvation = -25154.592891 eV Core-core repulsion = 21219.196679 eV Total energy + Delta-G solvation = -3935.396212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70338 -40.14153 -38.96642 -37.97750 -36.58512 -35.84773 -33.22842 -32.55531 -30.96032 -30.64064 -28.02010 -27.59476 -25.62320 -24.31820 -23.02401 -22.37917 -21.43516 -20.45189 -19.10548 -18.33398 -17.65398 -17.32484 -17.19684 -16.41383 -16.02345 -15.91005 -15.37569 -14.89682 -14.82434 -14.62051 -14.55856 -14.39706 -14.25557 -14.05125 -13.55385 -13.17126 -13.03974 -12.99074 -12.44227 -11.78191 -11.51879 -11.28572 -11.19938 -11.14496 -10.83625 -10.77067 -10.41880 -10.23954 -10.08858 -9.94735 -9.48429 -9.21817 -9.11129 -8.76088 -8.12310 -6.77291 -6.33418 -4.08076 0.77969 0.95967 1.17429 1.53639 2.14621 2.59087 2.78661 3.14388 3.17467 3.25278 3.38144 3.53048 3.61226 3.96042 4.17860 4.35568 4.48029 4.59988 4.75578 4.90716 4.92214 5.02923 5.06025 5.08639 5.19256 5.33203 5.41552 5.58849 5.72648 5.81068 6.10216 6.33911 6.40685 6.49952 6.57919 6.78210 6.86596 6.94978 7.06729 7.52878 7.56919 8.12645 8.27757 9.12541 10.73379 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.002621 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.876181 B =10681.222608 C =11326.544779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.573 5.573 3 C 0.532 3.468 4 O -0.465 6.465 5 C 0.067 3.933 6 N -0.429 5.429 7 N -0.485 5.485 8 C 0.569 3.431 9 O -0.506 6.506 10 C -0.146 4.146 11 C -0.088 4.088 12 C -0.138 4.138 13 C -0.049 4.049 14 C -0.105 4.105 15 S -0.032 6.032 16 C -0.521 4.521 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.922 3.078 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.013 4.013 25 C 0.708 3.292 26 O -0.520 6.520 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.422 0.578 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.270 0.730 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 12.051 18.093 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.321 5.321 3 C 0.319 3.681 4 O -0.334 6.334 5 C -0.059 4.059 6 N -0.257 5.257 7 N -0.237 5.237 8 C 0.358 3.642 9 O -0.378 6.378 10 C -0.153 4.153 11 C -0.107 4.107 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.216 4.216 15 S 0.203 5.797 16 C -0.668 4.668 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.034 4.034 25 C 0.409 3.591 26 O -0.390 6.390 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.266 0.734 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.349 10.924 16.747 22.514 hybrid contribution 1.309 1.936 0.333 2.361 sum -9.040 12.860 17.080 23.212 Atomic orbital electron populations 1.21909 0.74299 1.05171 1.03874 1.46226 1.09716 1.07467 1.68662 1.20649 0.88233 0.84795 0.74440 1.90846 1.78639 1.17721 1.46226 1.22810 0.96501 0.79096 1.07508 1.45636 0.99674 1.01679 1.78706 1.44640 1.27445 1.37138 1.14512 1.18990 0.83297 0.79813 0.82088 1.90827 1.51022 1.64229 1.31721 1.19477 0.98286 1.01056 0.96448 1.21128 0.95650 0.98038 0.95892 1.21074 0.98263 0.97789 0.98651 1.22034 0.96899 0.96475 0.91628 1.22884 0.96921 1.00150 1.01596 1.83690 1.60419 1.23716 1.11883 1.22873 1.31487 1.08482 1.03975 0.90504 1.25013 0.96595 0.96129 0.95854 1.69993 1.42668 1.24080 1.13682 0.86059 0.79684 0.80361 0.79147 1.19486 1.20446 1.20419 1.21968 0.93997 0.90874 0.96606 1.15762 0.80828 0.84564 0.77916 1.91028 1.74409 1.20167 1.53402 0.90618 0.89051 0.88902 0.85228 0.85325 0.73397 0.86353 0.85500 0.84786 0.92033 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.73 59.84 0.64 1.27 16 2 N -0.57 -5.63 3.00 -128.16 -0.39 -6.02 16 3 C 0.53 4.73 8.32 -10.56 -0.09 4.64 16 4 O -0.47 -5.04 17.76 5.59 0.10 -4.94 16 5 C 0.07 0.46 7.88 -4.32 -0.03 0.43 16 6 N -0.43 -4.64 3.41 -65.73 -0.22 -4.87 16 7 N -0.48 -5.37 6.30 30.53 0.19 -5.17 16 8 C 0.57 8.79 7.87 -12.32 -0.10 8.69 16 9 O -0.51 -9.95 16.61 5.32 0.09 -9.86 16 10 C -0.15 -2.27 5.87 -104.99 -0.62 -2.88 16 11 C -0.09 -1.05 9.54 -39.12 -0.37 -1.42 16 12 C -0.14 -1.75 10.02 -39.68 -0.40 -2.15 16 13 C -0.05 -0.82 9.79 -39.25 -0.38 -1.20 16 14 C -0.10 -2.13 5.45 -38.99 -0.21 -2.34 16 15 S -0.03 -0.80 21.41 -107.50 -2.30 -3.10 16 16 C -0.52 -14.29 9.46 30.91 0.29 -14.00 16 17 H 0.08 2.08 7.79 -52.48 -0.41 1.67 16 18 C 0.07 2.01 5.49 -17.46 -0.10 1.92 16 19 N -0.87 -25.03 13.22 55.49 0.73 -24.30 16 20 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.01 -0.24 9.34 -38.92 -0.36 -0.61 16 25 C 0.71 9.03 8.34 -88.01 -0.73 8.30 16 26 O -0.52 -8.63 17.43 5.33 0.09 -8.54 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.54 8.00 -51.93 -0.42 0.12 16 29 H 0.09 0.70 7.86 -51.93 -0.41 0.30 16 30 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.42 3.02 6.86 -182.59 -1.25 1.77 16 33 H 0.12 0.86 6.40 -52.49 -0.34 0.52 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.14 2.98 7.65 -52.49 -0.40 2.58 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -37.13 351.52 -8.36 -45.50 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.47 Total: -0.64 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.46 Total: 0.66 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.32 Total: -40.35 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.28 Total: -23.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.30 Total: -3.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.13 -8.36 -45.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630817499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.825 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds