Wall clock time and date at job start Tue Mar 31 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46962 * 300.00106 * 3 2 1 6 6 H 1.48503 * 109.46837 * 59.99855 * 3 2 1 7 7 C 1.38797 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00365 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00236 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00005 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.39928 * 120.00026 * 185.09368 * 13 11 10 15 15 C 1.38872 * 120.06926 * 213.11127 * 14 13 11 16 16 C 1.38115 * 119.92589 * 179.69773 * 15 14 13 17 17 C 1.38281 * 120.06889 * 0.56957 * 16 15 14 18 18 C 1.50706 * 119.92744 * 179.74673 * 17 16 15 19 19 H 1.08997 * 110.53395 * 202.80471 * 18 17 16 20 20 N 1.47312 * 110.60047 * 325.80516 * 18 17 16 21 21 C 1.34528 * 106.62184 * 118.52600 * 20 18 17 22 22 O 1.21531 * 123.77043 * 179.97438 * 21 20 18 23 23 N 1.33788 * 112.45425 * 0.02562 * 21 20 18 24 24 C 1.34764 * 111.65116 * 359.97438 * 23 21 20 25 25 O 1.21233 * 127.16347 * 179.97438 * 24 23 21 26 26 C 1.38274 * 120.14589 * 359.72040 * 17 16 15 27 27 C 1.38115 * 120.06736 * 359.97438 * 26 17 16 28 28 H 0.97006 * 119.99613 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47236 * 59.99676 * 10 9 7 30 30 H 1.09007 * 109.46615 * 299.99802 * 10 9 7 31 31 H 0.97003 * 120.00424 * 5.36607 * 13 11 10 32 32 H 1.08002 * 120.03803 * 359.96514 * 15 14 13 33 33 H 1.08003 * 119.96515 * 180.29550 * 16 15 14 34 34 H 0.97003 * 126.68623 * 298.51028 * 20 18 17 35 35 H 0.97007 * 124.17367 * 179.97438 * 23 21 20 36 36 H 1.07999 * 119.96957 * 180.02562 * 26 17 16 37 37 H 1.08004 * 120.03402 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0008 14 6 2.3571 -7.6505 -0.1089 15 6 3.0107 -8.6920 0.5364 16 6 2.5239 -9.9804 0.4328 17 6 1.3939 -10.2354 -0.3223 18 6 0.8688 -11.6433 -0.4378 19 1 0.2634 -11.7529 -1.3376 20 7 1.9784 -12.6123 -0.4346 21 6 1.8013 -13.3965 0.6440 22 8 2.5460 -14.3083 0.9459 23 7 0.7132 -13.0612 1.3465 24 6 0.0665 -12.0164 0.7930 25 8 -0.9466 -11.4857 1.1953 26 6 0.7442 -9.2015 -0.9710 27 6 1.2223 -7.9099 -0.8662 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7314 -0.8906 31 1 3.7979 -6.1859 0.0785 32 1 3.8961 -8.4942 1.1223 33 1 3.0290 -10.7902 0.9383 34 1 2.6966 -12.6730 -1.0838 35 1 0.4253 -13.5143 2.1545 36 1 -0.1384 -9.4038 -1.5596 37 1 0.7147 -7.1028 -1.3735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641466434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:22 Heat of formation + Delta-G solvation = -47.102699 kcal Electronic energy + Delta-G solvation = -24606.439533 eV Core-core repulsion = 20669.029955 eV Total energy + Delta-G solvation = -3937.409578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84908 -40.46133 -39.05660 -38.54130 -36.62001 -35.05883 -33.96481 -32.50370 -31.28770 -31.01666 -29.18303 -26.77967 -25.55059 -23.55960 -23.08061 -22.92354 -21.62938 -20.41124 -18.78169 -18.21011 -17.75094 -17.37675 -17.23072 -16.64607 -16.40235 -15.82803 -15.58359 -15.46621 -14.88613 -14.87129 -14.62366 -14.54072 -14.03235 -13.88554 -13.52235 -13.44088 -13.13521 -12.71263 -12.40144 -12.17771 -11.60670 -11.48985 -11.12482 -11.10095 -10.84566 -10.81534 -10.78850 -10.37613 -10.05086 -9.90215 -9.65309 -9.14898 -9.14484 -8.35301 -8.24947 -6.60272 -6.29319 -4.01210 0.83259 1.17306 1.19586 2.02680 2.55542 2.64745 2.76795 2.79391 3.16980 3.21725 3.26618 3.42369 3.50662 3.82420 4.06030 4.12264 4.33799 4.68108 4.71770 4.86143 4.92225 5.06377 5.13111 5.32607 5.36693 5.53216 5.58628 5.70942 5.78044 5.93545 5.98350 6.15724 6.17246 6.28768 6.35063 6.44030 6.82297 6.95127 7.34685 7.52810 7.67169 8.26090 8.28023 9.16345 10.78101 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.001947 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.889919 B =14373.982926 C =14778.354525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.155 4.155 11 C 0.531 3.469 12 O -0.491 6.491 13 N -0.682 5.682 14 C 0.178 3.822 15 C -0.152 4.152 16 C -0.077 4.077 17 C -0.137 4.137 18 C 0.144 3.856 19 H 0.138 0.862 20 N -0.717 5.717 21 C 0.705 3.295 22 O -0.545 6.545 23 N -0.681 5.681 24 C 0.530 3.470 25 O -0.452 6.452 26 C -0.066 4.066 27 C -0.122 4.122 28 H 0.269 0.731 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.443 0.557 35 H 0.433 0.567 36 H 0.132 0.868 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -24.791 -2.352 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.363 6.363 13 N -0.329 5.329 14 C 0.082 3.918 15 C -0.172 4.172 16 C -0.096 4.096 17 C -0.139 4.139 18 C 0.035 3.965 19 H 0.155 0.845 20 N -0.382 5.382 21 C 0.404 3.596 22 O -0.419 6.419 23 N -0.353 5.353 24 C 0.315 3.685 25 O -0.319 6.319 26 C -0.085 4.085 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.288 0.712 35 H 0.276 0.724 36 H 0.150 0.850 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.315 -25.057 -2.047 25.508 hybrid contribution 2.635 1.211 0.226 2.909 sum 6.950 -23.846 -1.821 24.904 Atomic orbital electron populations 1.70022 1.05963 1.27494 1.46665 1.25006 0.95055 0.99117 0.94418 0.86095 0.79553 0.81752 0.77964 1.19594 1.20511 1.20521 1.22887 0.94949 0.91452 1.59211 0.90756 1.85442 1.04361 0.96424 1.96764 1.23554 1.07076 0.94476 1.05405 1.20589 0.86509 0.86318 0.74684 1.90738 1.15148 1.85205 1.45189 1.43798 1.11146 1.03851 1.74070 1.17925 0.95168 0.84214 0.94475 1.20843 1.02593 0.92144 1.01669 1.20621 0.95345 0.96261 0.97354 1.19231 0.98662 0.92196 1.03809 1.20792 0.88230 0.88255 0.99209 0.84517 1.45572 1.30327 1.33652 1.28683 1.15849 0.80970 0.82209 0.80533 1.91072 1.47764 1.31229 1.71836 1.44347 1.26943 1.34174 1.29829 1.20764 0.83997 0.78726 0.85033 1.90895 1.21558 1.53837 1.65630 1.20835 0.98534 0.91436 0.97715 1.21261 0.96849 0.97363 0.98747 0.92130 0.88786 0.88645 0.75281 0.85323 0.86024 0.71188 0.72432 0.84971 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.76 9.50 30.94 0.29 -14.46 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 10 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 11 C 0.53 9.06 7.59 -10.99 -0.08 8.98 16 12 O -0.49 -10.21 13.55 5.55 0.08 -10.14 16 13 N -0.68 -8.40 5.34 -9.86 -0.05 -8.45 16 14 C 0.18 2.13 6.28 -83.69 -0.53 1.61 16 15 C -0.15 -1.45 9.96 -39.39 -0.39 -1.84 16 16 C -0.08 -0.65 9.34 -39.61 -0.37 -1.02 16 17 C -0.14 -1.12 5.08 -104.59 -0.53 -1.65 16 18 C 0.14 0.86 3.90 -69.35 -0.27 0.59 16 19 H 0.14 0.49 8.07 -51.93 -0.42 0.07 16 20 N -0.72 -3.68 5.34 -60.32 -0.32 -4.00 16 21 C 0.71 5.39 8.98 -88.02 -0.79 4.60 16 22 O -0.55 -6.11 18.04 5.34 0.10 -6.01 16 23 N -0.68 -4.54 5.70 -15.79 -0.09 -4.63 16 24 C 0.53 4.31 8.13 -10.55 -0.09 4.23 16 25 O -0.45 -5.31 18.02 5.60 0.10 -5.21 16 26 C -0.07 -0.64 9.68 -39.61 -0.38 -1.02 16 27 C -0.12 -1.53 8.66 -39.39 -0.34 -1.87 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.41 3.61 8.82 -40.82 -0.36 3.25 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.88 7.57 -52.48 -0.40 0.49 16 34 H 0.44 1.43 8.96 -40.82 -0.37 1.06 16 35 H 0.43 2.18 8.96 -40.82 -0.37 1.81 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 2.11 6.42 -52.48 -0.34 1.78 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -36.88 346.72 -8.30 -45.18 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.48 Total: 3.19 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.35 Total: -2.56 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.27 Total: -41.86 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.27 Total: -21.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.88 -8.30 -45.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641466434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.920 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds