Wall clock time and date at job start Tue Mar 31 2020 18:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46962 * 300.00106 * 3 2 1 6 6 H 1.48503 * 109.46837 * 59.99855 * 3 2 1 7 7 C 1.38797 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00365 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00236 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00005 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99731 * 180.02562 * 11 10 9 14 14 C 1.39928 * 120.00026 * 185.09368 * 13 11 10 15 15 C 1.38872 * 120.06926 * 213.11127 * 14 13 11 16 16 C 1.38115 * 119.92589 * 179.69773 * 15 14 13 17 17 C 1.38281 * 120.06889 * 0.56957 * 16 15 14 18 18 C 1.50706 * 119.92744 * 179.74673 * 17 16 15 19 19 H 1.08997 * 110.53395 * 202.80471 * 18 17 16 20 20 N 1.47312 * 110.60047 * 325.80516 * 18 17 16 21 21 C 1.34528 * 106.62184 * 118.52600 * 20 18 17 22 22 O 1.21531 * 123.77043 * 179.97438 * 21 20 18 23 23 N 1.33788 * 112.45425 * 0.02562 * 21 20 18 24 24 C 1.34764 * 111.65116 * 359.97438 * 23 21 20 25 25 O 1.21233 * 127.16347 * 179.97438 * 24 23 21 26 26 C 1.38274 * 120.14589 * 359.72040 * 17 16 15 27 27 C 1.38115 * 120.06736 * 359.97438 * 26 17 16 28 28 H 0.97006 * 119.99613 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47236 * 59.99676 * 10 9 7 30 30 H 1.09007 * 109.46615 * 299.99802 * 10 9 7 31 31 H 0.97003 * 120.00424 * 5.36607 * 13 11 10 32 32 H 1.08002 * 120.03803 * 359.96514 * 15 14 13 33 33 H 1.08003 * 119.96515 * 180.29550 * 16 15 14 34 34 H 0.97003 * 126.68623 * 298.51028 * 20 18 17 35 35 H 0.97007 * 124.17367 * 179.97438 * 23 21 20 36 36 H 1.07999 * 119.96957 * 180.02562 * 26 17 16 37 37 H 1.08004 * 120.03402 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8440 -6.3431 -0.0008 14 6 2.3571 -7.6505 -0.1089 15 6 3.0107 -8.6920 0.5364 16 6 2.5239 -9.9804 0.4328 17 6 1.3939 -10.2354 -0.3223 18 6 0.8688 -11.6433 -0.4378 19 1 0.2634 -11.7529 -1.3376 20 7 1.9784 -12.6123 -0.4346 21 6 1.8013 -13.3965 0.6440 22 8 2.5460 -14.3083 0.9459 23 7 0.7132 -13.0612 1.3465 24 6 0.0665 -12.0164 0.7930 25 8 -0.9466 -11.4857 1.1953 26 6 0.7442 -9.2015 -0.9710 27 6 1.2223 -7.9099 -0.8662 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7314 -0.8906 31 1 3.7979 -6.1859 0.0785 32 1 3.8961 -8.4942 1.1223 33 1 3.0290 -10.7902 0.9383 34 1 2.6966 -12.6730 -1.0838 35 1 0.4253 -13.5143 2.1545 36 1 -0.1384 -9.4038 -1.5596 37 1 0.7147 -7.1028 -1.3735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641466434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:21 Heat of formation + Delta-G solvation = -76.700582 kcal Electronic energy + Delta-G solvation = -24607.722994 eV Core-core repulsion = 20669.029955 eV Total energy + Delta-G solvation = -3938.693039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47597 -41.53700 -39.84159 -39.49725 -37.37816 -36.04532 -34.68553 -34.59034 -32.15895 -31.95133 -30.34506 -27.79981 -27.42675 -24.36662 -23.78622 -23.61694 -22.44095 -21.50512 -19.93680 -19.40528 -18.81056 -18.18553 -17.98288 -17.77663 -17.12194 -16.88744 -16.72131 -16.47117 -16.24957 -16.13082 -15.82770 -15.31776 -15.20709 -14.87193 -14.58661 -14.45896 -14.31302 -14.02100 -13.53541 -13.20680 -13.14610 -12.92364 -12.61239 -12.39498 -12.26280 -11.73831 -11.61156 -11.50552 -11.29034 -11.16505 -11.01186 -10.59538 -10.29581 -9.94816 -9.16295 -8.67837 -8.35920 -6.13895 0.01595 0.38871 0.52381 1.23039 1.39409 1.41462 1.45025 1.55764 1.57404 1.93961 2.08318 2.12553 2.25718 2.65457 2.98859 3.15534 3.26949 3.42710 3.73779 3.83926 3.97236 4.09817 4.25921 4.30088 4.39386 4.46634 4.55609 4.58003 5.00721 5.05030 5.13585 5.31162 5.41470 5.42030 5.45440 5.80833 5.85249 5.94424 6.19300 6.32920 6.35926 7.05524 7.06393 7.11233 8.73349 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.001947 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.889919 B =14373.982926 C =14778.354525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.537 6.537 13 N -0.659 5.659 14 C 0.151 3.849 15 C -0.143 4.143 16 C -0.076 4.076 17 C -0.124 4.124 18 C 0.152 3.848 19 H 0.171 0.829 20 N -0.697 5.697 21 C 0.709 3.291 22 O -0.579 6.579 23 N -0.673 5.673 24 C 0.533 3.467 25 O -0.491 6.491 26 C -0.068 4.068 27 C -0.146 4.146 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.429 0.571 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.455 0.545 35 H 0.440 0.560 36 H 0.150 0.850 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -26.140 -2.494 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.413 6.413 13 N -0.307 5.307 14 C 0.056 3.944 15 C -0.163 4.163 16 C -0.095 4.095 17 C -0.127 4.127 18 C 0.043 3.957 19 H 0.188 0.812 20 N -0.362 5.362 21 C 0.408 3.592 22 O -0.455 6.455 23 N -0.344 5.344 24 C 0.319 3.681 25 O -0.361 6.361 26 C -0.087 4.087 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.269 0.731 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.303 0.697 35 H 0.283 0.717 36 H 0.168 0.832 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.893 -26.451 -2.208 27.423 hybrid contribution 1.889 1.412 0.265 2.373 sum 8.782 -25.039 -1.943 26.606 Atomic orbital electron populations 1.70187 1.07960 1.28559 1.48047 1.26126 0.95965 1.03350 0.93793 0.84906 0.78675 0.76378 0.78000 1.17914 1.20009 1.20097 1.23235 0.95416 0.91866 1.58731 0.89694 1.85615 1.10142 0.99231 1.97077 1.23368 1.03897 0.93381 1.07415 1.20276 0.86230 0.86664 0.74582 1.90731 1.17099 1.85702 1.47745 1.43381 1.11455 1.03211 1.72629 1.18101 0.96003 0.84187 0.96116 1.21077 1.02813 0.91632 1.00761 1.20899 0.95283 0.96401 0.96879 1.19380 0.98029 0.92849 1.02395 1.20827 0.88307 0.86900 0.99628 0.81185 1.45468 1.30269 1.32464 1.28029 1.15860 0.80621 0.81940 0.80759 1.91065 1.48920 1.32814 1.72714 1.44285 1.26436 1.33714 1.29926 1.20974 0.83476 0.78401 0.85226 1.90893 1.23343 1.55119 1.66736 1.21010 0.99097 0.90647 0.97972 1.21196 0.97649 0.97863 0.99941 0.92004 0.86646 0.86509 0.73107 0.82913 0.84137 0.69736 0.71653 0.83209 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 42.69 29.55 68.60 2.03 44.72 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.15 9.50 67.95 0.65 -29.50 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 10 C -0.13 -4.74 6.16 71.24 0.44 -4.30 16 11 C 0.54 18.33 7.59 87.66 0.67 18.99 16 12 O -0.54 -23.30 13.55 -3.05 -0.04 -23.34 16 13 N -0.66 -15.47 5.34 -303.51 -1.62 -17.09 16 14 C 0.15 3.44 6.28 38.15 0.24 3.68 16 15 C -0.14 -2.33 9.96 22.39 0.22 -2.11 16 16 C -0.08 -1.05 9.34 22.25 0.21 -0.84 16 17 C -0.12 -1.72 5.08 -19.84 -0.10 -1.82 16 18 C 0.15 1.34 3.90 43.63 0.17 1.51 16 19 H 0.17 0.53 8.07 -2.39 -0.02 0.51 16 20 N -0.70 -4.84 5.34 -463.19 -2.47 -7.32 16 21 C 0.71 9.08 8.98 179.44 1.61 10.69 16 22 O -0.58 -11.86 18.04 -3.81 -0.07 -11.93 16 23 N -0.67 -7.60 5.70 -441.13 -2.52 -10.12 16 24 C 0.53 7.57 8.13 87.94 0.71 8.29 16 25 O -0.49 -11.01 18.02 -2.89 -0.05 -11.06 16 26 C -0.07 -1.24 9.68 22.25 0.22 -1.02 16 27 C -0.15 -3.69 8.66 22.39 0.19 -3.49 16 28 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 29 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 30 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 31 H 0.43 6.53 8.82 -92.71 -0.82 5.72 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.14 1.48 7.57 -2.91 -0.02 1.45 16 34 H 0.45 1.28 8.96 -92.71 -0.83 0.45 16 35 H 0.44 3.77 8.96 -92.70 -0.83 2.93 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.11 3.56 6.42 -2.91 -0.02 3.54 16 Total: -1.00 -83.93 346.72 -1.23 -85.15 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -1.30 Total: 13.59 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.69 Total: 1.23 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -6.32 Total: -89.30 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.16 Total: -46.33 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -83.93 -1.23 -85.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641466434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.452 kcal (2) G-P(sol) polarization free energy of solvation -83.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds