Wall clock time and date at job start Tue Mar 31 2020 19:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47195 * 264.66879 * 3 2 1 5 5 H 1.48506 * 109.47019 * 24.66802 * 3 2 1 6 6 H 1.48507 * 109.47329 * 144.66861 * 3 2 1 7 7 C 1.37884 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99783 * 6.10746 * 7 2 1 9 9 C 1.50694 * 119.99828 * 185.83979 * 7 2 1 10 10 O 1.42904 * 112.94846 * 305.44666 * 9 7 2 11 11 C 1.53950 * 113.74057 * 173.85528 * 9 7 2 12 12 N 1.47810 * 86.03885 * 222.08362 * 11 9 7 13 13 C 1.34778 * 134.45849 * 204.64800 * 12 11 9 14 14 O 1.21768 * 120.00227 * 179.86312 * 13 12 11 15 15 C 1.46140 * 119.99656 * 359.86324 * 13 12 11 16 16 C 1.37822 * 126.02715 * 180.02562 * 15 13 12 17 17 C 1.39912 * 106.67699 * 179.97438 * 16 15 13 18 18 C 1.36100 * 107.17496 * 0.02562 * 17 16 15 19 19 O 1.35360 * 125.57785 * 179.97438 * 18 17 16 20 20 C 1.42904 * 117.00078 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47365 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46681 * 59.99975 * 21 20 19 23 23 F 1.39901 * 109.47260 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47034 * 300.00396 * 21 20 19 25 25 O 1.34010 * 108.83890 * 359.76596 * 18 17 16 26 26 C 1.47580 * 91.05049 * 24.54775 * 12 11 9 27 27 H 0.96993 * 120.00588 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99471 * 304.11324 * 10 9 7 29 29 H 1.09000 * 113.76932 * 336.34995 * 11 9 7 30 30 H 1.09007 * 113.76878 * 107.74189 * 11 9 7 31 31 H 1.08005 * 126.66468 * 359.96518 * 16 15 13 32 32 H 1.08001 * 126.41512 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.46757 * 300.00051 * 20 19 18 34 34 H 1.08999 * 109.46921 * 60.00101 * 20 19 18 35 35 H 1.09003 * 113.76823 * 221.15081 * 26 12 11 36 36 H 1.09001 * 113.86847 * 89.77074 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3947 2.6826 0.5844 6 1 3.4858 1.4754 0.8097 7 6 2.0046 -1.1941 0.0005 8 1 1.4692 -2.1268 -0.0986 9 6 3.5057 -1.1973 0.1333 10 8 4.1534 -0.3822 -0.8456 11 6 4.1130 -2.6055 0.2674 12 7 4.9869 -2.0183 1.3048 13 6 6.1987 -2.3303 1.8056 14 8 6.6904 -1.6433 2.6825 15 6 6.9225 -3.4931 1.2961 16 6 8.1622 -3.9243 1.7163 17 6 8.4671 -5.0640 0.9642 18 6 7.4189 -5.2836 0.1244 19 8 7.3258 -6.2941 -0.7714 20 6 6.1378 -6.3514 -1.5636 21 6 6.2137 -7.5506 -2.5107 22 9 6.3335 -8.7277 -1.7641 23 9 5.0504 -7.6071 -3.2859 24 9 7.3262 -7.4141 -3.3478 25 8 6.4921 -4.3384 0.3327 26 6 4.0014 -0.9523 1.5700 27 1 -0.4851 0.8399 -0.0004 28 1 3.9295 -0.6108 -1.7582 29 1 3.4154 -3.3502 0.6506 30 1 4.6479 -2.9398 -0.6217 31 1 8.7787 -3.4706 2.4783 32 1 9.3661 -5.6582 1.0364 33 1 5.2710 -6.4574 -0.9113 34 1 6.0446 -5.4346 -2.1456 35 1 4.4474 0.0311 1.7192 36 1 3.2702 -1.2084 2.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647257951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:34 Heat of formation + Delta-G solvation = -206.934401 kcal Electronic energy + Delta-G solvation = -29104.196253 eV Core-core repulsion = 24142.953489 eV Total energy + Delta-G solvation = -4961.242764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.59053 -48.13088 -48.05276 -42.95255 -39.83263 -39.16719 -37.66234 -34.45554 -33.43543 -32.57027 -31.19691 -29.83422 -28.19790 -25.81408 -25.50807 -24.15062 -22.59018 -22.07827 -20.29311 -19.65564 -19.17446 -19.15903 -18.39426 -18.19793 -17.84776 -17.34653 -17.03226 -15.91029 -15.66078 -15.17212 -15.02464 -14.91967 -14.74994 -14.67880 -14.48484 -14.20568 -14.19859 -14.12524 -13.90710 -13.48097 -13.32998 -13.11218 -13.06540 -12.74190 -12.35724 -12.31374 -12.20217 -12.09947 -11.35794 -10.87542 -10.70934 -10.22614 -10.19653 -10.08407 -9.22155 -8.93481 -8.82446 -8.46345 -8.09309 -6.36943 -4.52651 0.95569 1.47198 2.15534 2.18725 2.56937 3.15375 3.16654 3.30892 3.36464 3.39174 3.42406 3.52370 3.80778 4.30547 4.36693 4.37240 4.56320 4.62016 4.85433 4.98273 5.11833 5.39388 5.44031 5.58398 5.81944 5.84194 6.07563 6.08156 6.13700 6.30494 6.40098 6.66649 6.74363 7.20995 7.95434 8.01315 8.30817 8.54792 8.65966 9.23540 10.71887 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.003540 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.906680 B = 7906.979165 C = 9583.117585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.306 1.306 6 H -0.259 1.259 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.200 3.800 10 O -0.559 6.559 11 C 0.083 3.917 12 N -0.625 5.625 13 C 0.615 3.385 14 O -0.536 6.536 15 C -0.066 4.066 16 C -0.098 4.098 17 C -0.221 4.221 18 C 0.195 3.805 19 O -0.249 6.249 20 C 0.005 3.995 21 C 0.469 3.531 22 F -0.172 7.172 23 F -0.166 7.166 24 F -0.172 7.172 25 O -0.182 6.182 26 C 0.117 3.883 27 H 0.270 0.730 28 H 0.374 0.626 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.734 -13.997 -3.710 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.119 4.119 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.183 1.183 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.159 3.841 10 O -0.366 6.366 11 C -0.039 4.039 12 N -0.357 5.357 13 C 0.404 3.596 14 O -0.417 6.417 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.240 4.240 18 C 0.100 3.900 19 O -0.163 6.163 20 C -0.072 4.072 21 C 0.415 3.585 22 F -0.154 7.154 23 F -0.147 7.147 24 F -0.153 7.153 25 O -0.082 6.082 26 C -0.004 4.004 27 H 0.080 0.920 28 H 0.222 0.778 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.090 -13.451 -2.854 18.984 hybrid contribution -0.014 0.200 -0.814 0.838 sum 13.075 -13.250 -3.668 18.973 Atomic orbital electron populations 1.69921 1.06678 1.28061 1.46747 1.25006 0.94712 1.00006 0.92216 0.86403 0.79213 0.81311 0.79279 1.20515 1.23453 1.18330 1.21071 0.87746 0.95568 1.54927 0.89713 1.20530 0.91937 0.85290 0.86333 1.86283 1.71841 1.60172 1.18338 1.24146 0.90187 1.00179 0.89410 1.50159 1.15205 1.31389 1.38962 1.16001 0.80587 0.81641 0.81365 1.90873 1.68289 1.50862 1.31627 1.22263 0.97742 0.95853 0.95852 1.21968 0.94451 0.95054 1.00342 1.20763 1.00397 1.02406 1.00476 1.20472 0.89791 0.86040 0.93738 1.86320 1.38689 1.42865 1.48450 1.23939 0.89895 0.98213 0.95119 1.19820 0.74268 0.84032 0.80406 1.93250 1.95616 1.50464 1.76030 1.93267 1.48822 1.96527 1.76075 1.93249 1.53148 1.95770 1.73172 1.84052 1.42013 1.33217 1.48870 1.23923 0.87037 0.90559 0.98913 0.92039 0.77846 0.89028 0.91108 0.81328 0.81734 0.86221 0.86242 0.90311 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 13.96 55.43 0.77 -23.62 16 2 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.91 21.20 25.58 -169.99 -4.35 16.85 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.31 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.00 5.30 56.52 0.30 -5.70 16 7 C -0.56 -13.45 9.16 -34.44 -0.32 -13.77 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.20 4.13 0.93 -90.85 -0.08 4.05 16 10 O -0.56 -11.35 10.55 -35.23 -0.37 -11.73 16 11 C 0.08 1.45 7.32 -2.84 -0.02 1.43 16 12 N -0.62 -11.91 3.61 -179.82 -0.65 -12.56 16 13 C 0.62 11.59 8.00 -13.09 -0.10 11.48 16 14 O -0.54 -11.41 17.60 5.13 0.09 -11.32 16 15 C -0.07 -1.03 7.10 -36.56 -0.26 -1.29 16 16 C -0.10 -1.25 10.66 -39.11 -0.42 -1.67 16 17 C -0.22 -2.43 10.89 -39.72 -0.43 -2.86 16 18 C 0.20 2.29 7.86 29.96 0.24 2.53 16 19 O -0.25 -2.53 10.08 -41.00 -0.41 -2.94 16 20 C 0.01 0.04 5.63 37.16 0.21 0.25 16 21 C 0.47 3.93 3.32 37.16 0.12 4.05 16 22 F -0.17 -1.61 17.26 2.25 0.04 -1.57 16 23 F -0.17 -1.43 17.32 2.25 0.04 -1.39 16 24 F -0.17 -1.62 17.26 2.25 0.04 -1.58 16 25 O -0.18 -2.47 8.62 -19.25 -0.17 -2.64 16 26 C 0.12 2.41 7.28 -2.97 -0.02 2.39 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.37 6.28 9.10 45.56 0.41 6.70 16 29 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 30 H 0.07 1.09 7.53 -51.92 -0.39 0.69 16 31 H 0.17 1.91 8.06 -52.48 -0.42 1.48 16 32 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.72 6.82 -51.93 -0.35 1.37 16 36 H 0.10 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.56 333.35 -3.65 -34.21 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.52 Total: 4.50 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.19 Total: 8.76 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.12 Total: -36.18 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.86 Total: -28.63 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.12 Total: -4.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.35 Total: 16.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.56 -3.65 -34.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647257951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.724 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds