Wall clock time and date at job start Tue Mar 31 2020 19:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47195 * 264.66879 * 3 2 1 5 5 H 1.48506 * 109.47019 * 24.66802 * 3 2 1 6 6 H 1.48507 * 109.47329 * 144.66861 * 3 2 1 7 7 C 1.37884 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99783 * 6.10746 * 7 2 1 9 9 C 1.50694 * 119.99828 * 185.83979 * 7 2 1 10 10 O 1.42904 * 112.94846 * 305.44666 * 9 7 2 11 11 C 1.53950 * 113.74057 * 173.85528 * 9 7 2 12 12 N 1.47810 * 86.03885 * 222.08362 * 11 9 7 13 13 C 1.34778 * 134.45849 * 204.64800 * 12 11 9 14 14 O 1.21768 * 120.00227 * 179.86312 * 13 12 11 15 15 C 1.46140 * 119.99656 * 359.86324 * 13 12 11 16 16 C 1.37822 * 126.02715 * 180.02562 * 15 13 12 17 17 C 1.39912 * 106.67699 * 179.97438 * 16 15 13 18 18 C 1.36100 * 107.17496 * 0.02562 * 17 16 15 19 19 O 1.35360 * 125.57785 * 179.97438 * 18 17 16 20 20 C 1.42904 * 117.00078 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47365 * 179.97438 * 20 19 18 22 22 F 1.39904 * 109.46681 * 59.99975 * 21 20 19 23 23 F 1.39901 * 109.47260 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47034 * 300.00396 * 21 20 19 25 25 O 1.34010 * 108.83890 * 359.76596 * 18 17 16 26 26 C 1.47580 * 91.05049 * 24.54775 * 12 11 9 27 27 H 0.96993 * 120.00588 * 0.02562 * 1 2 3 28 28 H 0.96705 * 113.99471 * 304.11324 * 10 9 7 29 29 H 1.09000 * 113.76932 * 336.34995 * 11 9 7 30 30 H 1.09007 * 113.76878 * 107.74189 * 11 9 7 31 31 H 1.08005 * 126.66468 * 359.96518 * 16 15 13 32 32 H 1.08001 * 126.41512 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.46757 * 300.00051 * 20 19 18 34 34 H 1.08999 * 109.46921 * 60.00101 * 20 19 18 35 35 H 1.09003 * 113.76823 * 221.15081 * 26 12 11 36 36 H 1.09001 * 113.86847 * 89.77074 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3947 2.6826 0.5844 6 1 3.4858 1.4754 0.8097 7 6 2.0046 -1.1941 0.0005 8 1 1.4692 -2.1268 -0.0986 9 6 3.5057 -1.1973 0.1333 10 8 4.1534 -0.3822 -0.8456 11 6 4.1130 -2.6055 0.2674 12 7 4.9869 -2.0183 1.3048 13 6 6.1987 -2.3303 1.8056 14 8 6.6904 -1.6433 2.6825 15 6 6.9225 -3.4931 1.2961 16 6 8.1622 -3.9243 1.7163 17 6 8.4671 -5.0640 0.9642 18 6 7.4189 -5.2836 0.1244 19 8 7.3258 -6.2941 -0.7714 20 6 6.1378 -6.3514 -1.5636 21 6 6.2137 -7.5506 -2.5107 22 9 6.3335 -8.7277 -1.7641 23 9 5.0504 -7.6071 -3.2859 24 9 7.3262 -7.4141 -3.3478 25 8 6.4921 -4.3384 0.3327 26 6 4.0014 -0.9523 1.5700 27 1 -0.4851 0.8399 -0.0004 28 1 3.9295 -0.6108 -1.7582 29 1 3.4154 -3.3502 0.6506 30 1 4.6479 -2.9398 -0.6217 31 1 8.7787 -3.4706 2.4783 32 1 9.3661 -5.6582 1.0364 33 1 5.2710 -6.4574 -0.9113 34 1 6.0446 -5.4346 -2.1456 35 1 4.4474 0.0311 1.7192 36 1 3.2702 -1.2084 2.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647257951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:33 Heat of formation + Delta-G solvation = -228.940943 kcal Electronic energy + Delta-G solvation = -29105.150528 eV Core-core repulsion = 24142.953489 eV Total energy + Delta-G solvation = -4962.197039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.27427 -48.81216 -48.75293 -43.93024 -41.29777 -40.04428 -39.15590 -36.03886 -34.53203 -34.39609 -32.04371 -31.13888 -29.46559 -27.33226 -27.16285 -24.93373 -23.67711 -23.02250 -21.73423 -20.67115 -20.32329 -19.84227 -19.71827 -19.12921 -18.89073 -18.42717 -18.24891 -17.40059 -17.02779 -16.68026 -16.13924 -15.88224 -15.71731 -15.51256 -15.46298 -15.26404 -15.17717 -14.91940 -14.90232 -14.89364 -14.60017 -14.37235 -14.15928 -14.03813 -13.88258 -13.79696 -13.03771 -13.01598 -12.93294 -12.61904 -12.59068 -11.96764 -11.62446 -11.17218 -11.03256 -10.79424 -10.53281 -9.83199 -9.25123 -8.37894 -6.53053 -0.13413 0.66230 1.22118 1.29367 1.43815 1.48014 1.63456 1.72231 1.88787 2.05444 2.37362 2.50308 2.78905 2.95065 3.12623 3.22243 3.51733 3.66414 3.77526 3.82350 3.84413 4.21870 4.36702 4.40440 4.47052 4.61453 4.67066 4.72901 4.78152 5.04500 5.14973 5.32437 5.40619 5.81133 6.03490 6.55187 6.62242 6.88189 7.06727 7.27572 8.74488 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.003540 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.906680 B = 7906.979165 C = 9583.117585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.047 3.953 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.315 1.315 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.196 3.804 10 O -0.565 6.565 11 C 0.100 3.900 12 N -0.630 5.630 13 C 0.614 3.386 14 O -0.572 6.572 15 C -0.106 4.106 16 C -0.076 4.076 17 C -0.218 4.218 18 C 0.209 3.791 19 O -0.249 6.249 20 C 0.000 4.000 21 C 0.474 3.526 22 F -0.178 7.178 23 F -0.167 7.167 24 F -0.178 7.178 25 O -0.186 6.186 26 C 0.110 3.890 27 H 0.270 0.730 28 H 0.389 0.611 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.063 0.937 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.703 -15.423 -4.426 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.156 4.156 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.244 1.244 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.155 3.845 10 O -0.374 6.374 11 C -0.021 4.021 12 N -0.361 5.361 13 C 0.406 3.594 14 O -0.455 6.455 15 C -0.156 4.156 16 C -0.096 4.096 17 C -0.237 4.237 18 C 0.113 3.887 19 O -0.163 6.163 20 C -0.076 4.076 21 C 0.420 3.580 22 F -0.160 7.160 23 F -0.148 7.148 24 F -0.160 7.160 25 O -0.086 6.086 26 C -0.012 4.012 27 H 0.079 0.921 28 H 0.239 0.761 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.198 0.802 32 H 0.213 0.787 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.071 -14.904 -3.603 21.499 hybrid contribution -0.569 0.472 -0.662 0.992 sum 14.501 -14.432 -4.265 20.899 Atomic orbital electron populations 1.70016 1.08043 1.28561 1.49565 1.25577 0.94981 1.02515 0.92501 0.85634 0.77990 0.78552 0.79262 1.19967 1.24369 1.18263 1.21270 0.89751 0.94296 1.52655 0.91793 1.20399 0.89939 0.87753 0.86426 1.86241 1.71426 1.60380 1.19396 1.24033 0.89888 0.98195 0.90018 1.50101 1.15457 1.31102 1.39490 1.16334 0.80105 0.82191 0.80817 1.90837 1.68984 1.52486 1.33226 1.21606 0.98819 0.96617 0.98582 1.22268 0.93154 0.94714 0.99485 1.21112 1.01202 1.01854 0.99520 1.20739 0.89348 0.85352 0.93305 1.86329 1.39692 1.42034 1.48207 1.24174 0.89556 0.98600 0.95288 1.19830 0.73964 0.83943 0.80271 1.93241 1.95633 1.50964 1.76149 1.93267 1.48863 1.96525 1.76133 1.93240 1.53520 1.95781 1.73432 1.83982 1.42581 1.33466 1.48606 1.23802 0.87807 0.90648 0.98969 0.92134 0.76077 0.88132 0.88490 0.80160 0.78739 0.84671 0.84686 0.91868 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.08 13.96 21.45 0.30 -51.79 16 2 C 0.05 2.41 5.47 84.66 0.46 2.88 16 3 Si 0.96 43.79 25.58 68.60 1.75 45.54 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.26 -11.71 5.30 99.48 0.53 -11.18 16 7 C -0.54 -26.09 9.16 25.60 0.23 -25.85 16 8 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 9 C 0.20 7.87 0.93 -10.88 -0.01 7.86 16 10 O -0.57 -21.94 10.55 -148.98 -1.57 -23.51 16 11 C 0.10 3.29 7.32 86.44 0.63 3.92 16 12 N -0.63 -23.35 3.61 -844.85 -3.05 -26.40 16 13 C 0.61 22.58 8.00 86.29 0.69 23.27 16 14 O -0.57 -24.30 17.60 -4.57 -0.08 -24.38 16 15 C -0.11 -3.06 7.10 24.22 0.17 -2.89 16 16 C -0.08 -1.73 10.66 22.58 0.24 -1.49 16 17 C -0.22 -3.96 10.89 22.18 0.24 -3.72 16 18 C 0.21 4.17 7.86 67.32 0.53 4.70 16 19 O -0.25 -4.19 10.08 -64.29 -0.65 -4.84 16 20 C 0.00 0.00 5.63 71.98 0.40 0.40 16 21 C 0.47 6.82 3.32 71.98 0.24 7.06 16 22 F -0.18 -2.97 17.26 44.97 0.78 -2.19 16 23 F -0.17 -2.52 17.32 44.97 0.78 -1.75 16 24 F -0.18 -2.97 17.26 44.97 0.78 -2.19 16 25 O -0.19 -4.52 8.62 13.55 0.12 -4.40 16 26 C 0.11 4.51 7.28 86.49 0.63 5.14 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.39 12.21 9.10 -74.05 -0.67 11.54 16 29 H 0.10 3.12 8.09 -2.39 -0.02 3.10 16 30 H 0.10 2.67 7.53 -2.38 -0.02 2.65 16 31 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 2.77 6.82 -2.39 -0.02 2.75 16 36 H 0.10 4.07 8.09 -2.39 -0.02 4.05 16 Total: -1.00 -65.63 333.35 3.93 -61.70 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.32 Total: 12.92 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 4.47 Total: 21.28 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.75 Total: -78.18 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -2.18 Total: -57.13 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 2.33 Total: -6.13 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.75 Total: 45.54 kcal Total: -65.63 3.93 -61.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647257951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.245 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds