Wall clock time and date at job start Tue Mar 31 2020 18:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36029 * 116.99998 * 2 1 4 4 C 1.39016 * 120.77243 * 179.97438 * 3 2 1 5 5 N 1.32300 * 119.12843 * 180.02562 * 4 3 2 6 6 C 1.32427 * 120.80029 * 0.02562 * 5 4 3 7 7 N 1.38642 * 119.15628 * 179.97438 * 6 5 4 8 8 S 1.65599 * 120.00174 * 165.00039 * 7 6 5 9 9 O 1.42102 * 106.39864 * 311.45556 * 8 7 6 10 10 O 1.42096 * 106.40555 * 178.53836 * 8 7 6 11 11 C 1.76199 * 107.22174 * 64.99422 * 8 7 6 12 12 C 1.38639 * 119.74787 * 90.00183 * 11 8 7 13 13 C 1.37620 * 120.24897 * 180.28039 * 12 11 8 14 14 C 1.40715 * 119.74131 * 359.51904 * 13 12 11 15 15 C 1.41399 * 120.24183 * 180.22985 * 14 13 12 16 16 H 1.07996 * 120.00044 * 204.52621 * 15 14 13 17 17 C 1.39950 * 119.99773 * 24.53568 * 15 14 13 18 18 N 1.30821 * 119.99991 * 17.71280 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 197.70913 * 17 15 14 20 20 H 1.48506 * 109.46742 * 59.99979 * 19 17 15 21 21 H 1.48505 * 109.46999 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47336 * 300.00007 * 19 17 15 23 23 C 1.40715 * 119.51261 * 0.47567 * 14 13 12 24 24 C 1.37609 * 119.74608 * 359.75586 * 23 14 13 25 25 N 1.32431 * 121.69107 * 0.27231 * 6 5 4 26 26 C 1.32305 * 120.78970 * 359.44145 * 25 6 5 27 27 H 1.09004 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47109 * 300.00067 * 1 2 3 29 29 H 1.08997 * 109.47228 * 59.99643 * 1 2 3 30 30 H 1.07998 * 120.43464 * 359.97438 * 4 3 2 31 31 H 0.97006 * 120.00162 * 344.99479 * 7 6 5 32 32 H 1.08000 * 119.87572 * 0.02562 * 12 11 8 33 33 H 1.07993 * 120.12561 * 179.72165 * 13 12 11 34 34 H 0.97005 * 119.99803 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.12510 * 179.73128 * 23 14 13 36 36 H 1.08002 * 119.87647 * 179.97438 * 24 23 14 37 37 H 1.07997 * 120.43139 * 180.27608 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 3.4337 1.3035 0.0005 5 7 4.0002 2.4990 0.0010 6 6 3.2627 3.5989 0.0015 7 7 3.8921 4.8342 0.0026 8 16 3.0339 6.2012 -0.3679 9 8 2.3188 5.9145 -1.5620 10 8 3.9400 7.2890 -0.2469 11 6 1.8255 6.4171 0.8961 12 6 2.1345 7.1633 2.0229 13 6 1.2005 7.3338 3.0191 14 6 -0.0755 6.7557 2.8860 15 6 -1.0449 6.9282 3.9009 16 1 -1.8408 6.2073 4.0155 17 6 -0.9730 8.0332 4.7566 18 7 -0.2489 9.0711 4.4252 19 14 -1.9111 8.0260 6.3720 20 1 -1.4448 6.8922 7.2101 21 1 -1.6702 9.3035 7.0899 22 1 -3.3633 7.8765 6.1005 23 6 -0.3780 6.0004 1.7379 24 6 0.5731 5.8391 0.7566 25 7 1.9393 3.5492 0.0069 26 6 1.3052 2.3880 0.0009 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0408 0.4103 0.0014 31 1 4.8353 4.8979 0.2205 32 1 3.1133 7.6091 2.1212 33 1 1.4448 7.9117 3.8981 34 1 -0.1988 9.8369 5.0186 35 1 -1.3528 5.5487 1.6275 36 1 0.3434 5.2595 -0.1252 37 1 0.2258 2.3542 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649790053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:21 Heat of formation + Delta-G solvation = -33.409866 kcal Electronic energy + Delta-G solvation = -26281.045455 eV Core-core repulsion = 22344.229642 eV Total energy + Delta-G solvation = -3936.815813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32726 -38.75933 -37.51942 -36.58715 -35.25437 -34.96340 -34.05574 -33.80997 -30.22743 -29.96424 -29.38734 -27.61455 -25.80535 -24.74021 -23.34581 -21.47696 -21.09789 -19.52046 -18.71530 -18.26335 -17.78041 -17.55212 -16.84919 -16.38071 -16.16179 -15.49067 -15.16069 -14.82798 -14.56314 -14.44307 -14.09892 -13.68556 -13.39199 -13.17384 -12.66508 -12.35546 -12.13861 -12.10446 -11.90019 -11.71390 -11.52028 -11.46955 -11.38990 -11.32727 -11.18278 -10.99589 -10.91252 -10.82593 -10.41880 -9.68493 -9.51606 -9.42551 -9.17579 -8.27293 -7.92383 -7.60180 -7.11688 -4.77991 0.94088 0.98183 1.00250 2.30260 2.85074 2.88819 2.90376 2.94987 3.02118 3.18977 3.66558 3.68141 4.04633 4.15450 4.24855 4.39452 4.50384 4.69973 4.94089 5.00302 5.10665 5.26205 5.38239 5.48914 5.55432 6.10990 6.15471 6.28998 6.62075 6.70662 6.71908 6.78995 7.00480 7.10561 7.17842 7.40250 7.49402 7.69070 7.80983 7.99616 8.01505 8.34891 8.54570 8.69727 9.79391 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004112 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.986549 B = 6808.323221 C = 8522.933307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.306 6.306 3 C -0.019 4.019 4 C 0.160 3.840 5 N -0.512 5.512 6 C 0.540 3.460 7 N -1.020 6.020 8 S 2.686 3.314 9 O -0.962 6.962 10 O -0.971 6.971 11 C -0.773 4.773 12 C -0.019 4.019 13 C -0.185 4.185 14 C 0.143 3.857 15 C -0.437 4.437 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.765 5.765 19 Si 0.917 3.083 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.250 4.250 24 C 0.037 3.963 25 N -0.501 5.501 26 C 0.120 3.880 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.179 0.821 31 H 0.432 0.568 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.290 0.710 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -13.729 -3.360 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.218 6.218 3 C -0.070 4.070 4 C -0.009 4.009 5 N -0.232 5.232 6 C 0.183 3.817 7 N -0.767 5.767 8 S 2.787 3.213 9 O -0.952 6.952 10 O -0.961 6.961 11 C -0.871 4.871 12 C -0.039 4.039 13 C -0.205 4.205 14 C 0.140 3.860 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.150 4.150 18 N -0.387 5.387 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.271 4.271 24 C 0.016 3.984 25 N -0.221 5.221 26 C -0.048 4.048 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.196 0.804 31 H 0.268 0.732 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.608 -12.191 -4.133 13.134 hybrid contribution -0.975 -0.639 1.542 1.933 sum 1.633 -12.830 -2.591 13.191 Atomic orbital electron populations 1.23165 0.77925 1.04455 1.01918 1.86083 1.21641 1.24763 1.89282 1.20585 0.94873 0.86733 1.04838 1.22428 0.89482 0.95225 0.93795 1.68020 1.39763 0.97595 1.17870 1.18710 0.85242 0.85902 0.91889 1.53861 1.23551 1.17841 1.81431 1.01694 0.73518 0.70971 0.75123 1.93498 1.72826 1.83771 1.45125 1.93537 1.65429 1.49142 1.88025 1.28734 1.12892 1.25474 1.20045 1.20275 0.97944 0.93625 0.92067 1.21301 0.93381 1.06133 0.99711 1.17856 0.91532 0.86779 0.89862 1.19898 1.09591 1.06360 1.10582 0.89590 1.26135 0.94825 0.94366 0.99644 1.69822 1.30049 1.03432 1.35400 0.86214 0.80501 0.78895 0.80416 1.18452 1.19898 1.18572 1.20977 0.98846 1.10907 0.96382 1.20207 0.90683 0.91135 0.96325 1.67929 1.07978 1.29641 1.16580 1.23169 1.01097 0.85681 0.94896 0.87825 0.92108 0.92261 0.80448 0.73185 0.88018 0.86107 0.89919 0.88452 0.86839 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -3.03 10.52 -19.83 -0.21 -3.24 16 3 C -0.02 -0.22 6.72 -39.01 -0.26 -0.49 16 4 C 0.16 1.90 11.26 -17.06 -0.19 1.71 16 5 N -0.51 -7.50 10.46 -13.79 -0.14 -7.64 16 6 C 0.54 9.08 8.18 -322.63 -2.64 6.44 16 7 N -1.02 -16.99 5.86 29.79 0.17 -16.82 16 8 S 2.69 53.83 5.39 -107.50 -0.58 53.25 16 9 O -0.96 -21.04 16.54 -57.17 -0.95 -21.98 16 10 O -0.97 -20.88 17.26 -57.17 -0.99 -21.87 16 11 C -0.77 -17.34 5.64 -39.29 -0.22 -17.56 16 12 C -0.02 -0.44 9.49 -39.66 -0.38 -0.81 16 13 C -0.18 -4.65 8.70 -38.87 -0.34 -4.99 16 14 C 0.14 3.63 5.57 -106.82 -0.60 3.03 16 15 C -0.44 -10.67 9.06 -37.74 -0.34 -11.01 16 16 H 0.09 1.97 7.91 -52.49 -0.41 1.55 16 17 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 18 N -0.76 -18.39 10.95 55.55 0.61 -17.78 16 19 Si 0.92 16.98 29.59 -169.99 -5.03 11.95 16 20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 C -0.25 -5.86 9.80 -38.88 -0.38 -6.24 16 24 C 0.04 0.82 7.90 -39.66 -0.31 0.51 16 25 N -0.50 -8.53 6.05 -13.79 -0.08 -8.62 16 26 C 0.12 1.61 10.30 -17.06 -0.18 1.43 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 29 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 30 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.43 5.88 8.95 -34.47 -0.31 5.57 16 32 H 0.10 2.21 7.60 -52.49 -0.40 1.81 16 33 H 0.12 3.08 6.16 -52.49 -0.32 2.75 16 34 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 35 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.11 2.35 6.57 -52.49 -0.34 2.01 16 37 H 0.18 1.84 6.45 -52.49 -0.34 1.50 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -32.05 333.17 -10.44 -42.49 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.33 Total: 10.48 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.93 Total: -25.25 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.56 Total: -50.86 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.14 Total: -47.09 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.58 Total: 53.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.05 -10.44 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649790053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.083 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds