Wall clock time and date at job start Tue Mar 31 2020 18:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36029 * 116.99998 * 2 1 4 4 C 1.39016 * 120.77243 * 179.97438 * 3 2 1 5 5 N 1.32300 * 119.12843 * 180.02562 * 4 3 2 6 6 C 1.32427 * 120.80029 * 0.02562 * 5 4 3 7 7 N 1.38642 * 119.15628 * 179.97438 * 6 5 4 8 8 S 1.65599 * 120.00174 * 165.00039 * 7 6 5 9 9 O 1.42102 * 106.39864 * 311.45556 * 8 7 6 10 10 O 1.42096 * 106.40555 * 178.53836 * 8 7 6 11 11 C 1.76199 * 107.22174 * 64.99422 * 8 7 6 12 12 C 1.38639 * 119.74787 * 90.00183 * 11 8 7 13 13 C 1.37620 * 120.24897 * 180.28039 * 12 11 8 14 14 C 1.40715 * 119.74131 * 359.51904 * 13 12 11 15 15 C 1.41399 * 120.24183 * 180.22985 * 14 13 12 16 16 H 1.07996 * 120.00044 * 204.52621 * 15 14 13 17 17 C 1.39950 * 119.99773 * 24.53568 * 15 14 13 18 18 N 1.30821 * 119.99991 * 17.71280 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 197.70913 * 17 15 14 20 20 H 1.48506 * 109.46742 * 59.99979 * 19 17 15 21 21 H 1.48505 * 109.46999 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47336 * 300.00007 * 19 17 15 23 23 C 1.40715 * 119.51261 * 0.47567 * 14 13 12 24 24 C 1.37609 * 119.74608 * 359.75586 * 23 14 13 25 25 N 1.32431 * 121.69107 * 0.27231 * 6 5 4 26 26 C 1.32305 * 120.78970 * 359.44145 * 25 6 5 27 27 H 1.09004 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47109 * 300.00067 * 1 2 3 29 29 H 1.08997 * 109.47228 * 59.99643 * 1 2 3 30 30 H 1.07998 * 120.43464 * 359.97438 * 4 3 2 31 31 H 0.97006 * 120.00162 * 344.99479 * 7 6 5 32 32 H 1.08000 * 119.87572 * 0.02562 * 12 11 8 33 33 H 1.07993 * 120.12561 * 179.72165 * 13 12 11 34 34 H 0.97005 * 119.99803 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.12510 * 179.73128 * 23 14 13 36 36 H 1.08002 * 119.87647 * 179.97438 * 24 23 14 37 37 H 1.07997 * 120.43139 * 180.27608 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 3.4337 1.3035 0.0005 5 7 4.0002 2.4990 0.0010 6 6 3.2627 3.5989 0.0015 7 7 3.8921 4.8342 0.0026 8 16 3.0339 6.2012 -0.3679 9 8 2.3188 5.9145 -1.5620 10 8 3.9400 7.2890 -0.2469 11 6 1.8255 6.4171 0.8961 12 6 2.1345 7.1633 2.0229 13 6 1.2005 7.3338 3.0191 14 6 -0.0755 6.7557 2.8860 15 6 -1.0449 6.9282 3.9009 16 1 -1.8408 6.2073 4.0155 17 6 -0.9730 8.0332 4.7566 18 7 -0.2489 9.0711 4.4252 19 14 -1.9111 8.0260 6.3720 20 1 -1.4448 6.8922 7.2101 21 1 -1.6702 9.3035 7.0899 22 1 -3.3633 7.8765 6.1005 23 6 -0.3780 6.0004 1.7379 24 6 0.5731 5.8391 0.7566 25 7 1.9393 3.5492 0.0069 26 6 1.3052 2.3880 0.0009 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0408 0.4103 0.0014 31 1 4.8353 4.8979 0.2205 32 1 3.1133 7.6091 2.1212 33 1 1.4448 7.9117 3.8981 34 1 -0.1988 9.8369 5.0186 35 1 -1.3528 5.5487 1.6275 36 1 0.3434 5.2595 -0.1252 37 1 0.2258 2.3542 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649790053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:21 Heat of formation + Delta-G solvation = -54.182053 kcal Electronic energy + Delta-G solvation = -26281.946204 eV Core-core repulsion = 22344.229642 eV Total energy + Delta-G solvation = -3937.716562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.36396 -39.63895 -39.32331 -38.26379 -36.94001 -36.19066 -35.78680 -34.92750 -32.03868 -31.22051 -30.94791 -28.34854 -27.59758 -25.74626 -24.40835 -23.26548 -22.90946 -20.92115 -19.89072 -19.37109 -19.27929 -19.02073 -18.34549 -17.84879 -17.18163 -17.01182 -16.54127 -15.89119 -15.77332 -15.70513 -15.42456 -15.16176 -14.93947 -14.52580 -14.13051 -13.93690 -13.62671 -13.51437 -13.25890 -13.20023 -13.09114 -13.00223 -12.90739 -12.82849 -12.53174 -12.31918 -12.11975 -12.04849 -11.88673 -11.47152 -11.24694 -11.15228 -10.29789 -9.75421 -9.43788 -9.29173 -8.84760 -6.62578 -0.59050 -0.09122 -0.03478 0.53090 1.16159 1.35895 1.44154 1.50308 1.72064 2.11888 2.20660 2.49147 2.55386 2.84256 2.99790 3.09929 3.36552 3.58628 3.61422 3.83899 4.29116 4.34719 4.42304 4.44968 4.50913 4.68532 4.82548 4.90916 4.98077 5.06724 5.17800 5.30013 5.52672 5.59640 5.66296 5.77957 5.84706 5.97822 6.20282 6.21461 6.52267 6.71616 6.86253 6.89921 8.09923 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004112 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.986549 B = 6808.323221 C = 8522.933307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.001 3.999 4 C 0.157 3.843 5 N -0.514 5.514 6 C 0.510 3.490 7 N -1.013 6.013 8 S 2.725 3.275 9 O -0.979 6.979 10 O -0.987 6.987 11 C -0.785 4.785 12 C -0.025 4.025 13 C -0.210 4.210 14 C 0.116 3.884 15 C -0.466 4.466 16 H 0.093 0.907 17 C 0.034 3.966 18 N -0.799 5.799 19 Si 0.991 3.009 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.253 1.253 23 C -0.264 4.264 24 C 0.040 3.960 25 N -0.534 5.534 26 C 0.102 3.898 27 H 0.129 0.871 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.216 0.784 31 H 0.444 0.556 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.298 0.702 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -15.873 -3.196 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.216 6.216 3 C -0.051 4.051 4 C -0.012 4.012 5 N -0.235 5.235 6 C 0.153 3.847 7 N -0.765 5.765 8 S 2.822 3.178 9 O -0.969 6.969 10 O -0.978 6.978 11 C -0.881 4.881 12 C -0.045 4.045 13 C -0.230 4.230 14 C 0.112 3.888 15 C -0.493 4.493 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.422 5.422 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.177 1.177 23 C -0.284 4.284 24 C 0.020 3.980 25 N -0.255 5.255 26 C -0.065 4.065 27 H 0.148 0.852 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.233 0.767 31 H 0.283 0.717 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.085 -14.357 -3.962 15.039 hybrid contribution -0.794 -0.197 1.375 1.600 sum 1.291 -14.554 -2.587 14.838 Atomic orbital electron populations 1.23502 0.75999 1.06454 1.02565 1.86109 1.23547 1.23444 1.88537 1.20599 0.94965 0.86982 1.02514 1.23092 0.90197 0.95369 0.92507 1.68030 1.39780 0.97854 1.17809 1.18785 0.85601 0.86178 0.94144 1.53238 1.23885 1.17385 1.81954 1.00501 0.72601 0.70814 0.73852 1.93468 1.73554 1.84277 1.45625 1.93509 1.65536 1.50713 1.88026 1.29165 1.14210 1.24747 1.19990 1.20473 0.98190 0.93638 0.92223 1.21316 0.94199 1.07354 1.00167 1.18210 0.91966 0.87640 0.90983 1.20208 1.10103 1.07380 1.11597 0.88854 1.27036 0.95460 0.93338 1.02686 1.69870 1.31260 1.04208 1.36880 0.85098 0.79178 0.79084 0.75576 1.18128 1.19065 1.17721 1.21207 0.99846 1.11098 0.96276 1.20390 0.90407 0.90695 0.96473 1.67832 1.08367 1.31582 1.17739 1.23590 1.02279 0.85448 0.95136 0.85248 0.91748 0.91328 0.76737 0.71709 0.86911 0.87336 0.89132 0.86985 0.85304 0.78497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.31 -5.09 10.52 -93.88 -0.99 -6.08 16 3 C 0.00 0.02 6.72 22.64 0.15 0.18 16 4 C 0.16 3.33 11.26 84.81 0.96 4.28 16 5 N -0.51 -14.23 10.46 -197.54 -2.07 -16.30 16 6 C 0.51 16.74 8.18 261.42 2.14 18.88 16 7 N -1.01 -33.29 5.86 -59.67 -0.35 -33.64 16 8 S 2.72 108.78 5.39 -56.49 -0.30 108.47 16 9 O -0.98 -42.45 16.54 -128.00 -2.12 -44.56 16 10 O -0.99 -42.32 17.26 -128.00 -2.21 -44.53 16 11 C -0.79 -35.59 5.64 22.46 0.13 -35.46 16 12 C -0.02 -1.21 9.49 22.22 0.21 -1.00 16 13 C -0.21 -10.96 8.70 22.73 0.20 -10.77 16 14 C 0.12 6.01 5.57 -21.29 -0.12 5.89 16 15 C -0.47 -23.20 9.06 23.46 0.21 -22.98 16 16 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 17 C 0.03 1.59 5.14 85.26 0.44 2.02 16 18 N -0.80 -39.32 10.95 21.83 0.24 -39.08 16 19 Si 0.99 34.52 29.59 68.60 2.03 36.55 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 23 C -0.26 -12.52 9.80 22.73 0.22 -12.30 16 24 C 0.04 1.81 7.90 22.22 0.18 1.99 16 25 N -0.53 -17.76 6.05 -197.55 -1.20 -18.96 16 26 C 0.10 2.57 10.30 84.81 0.87 3.45 16 27 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.65 7.71 -2.39 -0.02 0.63 16 29 H 0.07 0.61 7.71 -2.39 -0.02 0.60 16 30 H 0.22 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.44 11.86 8.95 -96.74 -0.87 11.00 16 32 H 0.11 5.02 7.60 -2.91 -0.02 5.00 16 33 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 34 H 0.30 13.09 8.30 -92.70 -0.77 12.32 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.13 5.31 6.57 -2.91 -0.02 5.29 16 37 H 0.20 3.79 6.45 -2.91 -0.02 3.77 16 Total: -1.00 -69.78 333.17 0.02 -69.76 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.28 Total: 32.98 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 6.70 Total: -44.61 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.37 Total: -107.98 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -5.31 Total: -95.17 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Atomic # 16 Polarization: 108.78 SS G_CDS: -0.30 Total: 108.47 kcal Total: -69.78 0.02 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649790053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.575 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds