Wall clock time and date at job start Tue Mar 31 2020 19:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48505 * 109.47352 * 240.00381 * 3 2 1 5 5 H 1.48502 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47642 * 120.00110 * 3 2 1 7 7 C 1.38810 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00793 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00198 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.47222 * 324.99900 * 10 9 7 12 12 C 1.53000 * 109.47449 * 204.99613 * 10 9 7 13 13 N 1.46499 * 109.46840 * 54.99576 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21582 * 120.00328 * 0.02562 * 14 13 12 16 16 C 1.47521 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.36788 * 126.92584 * 179.97438 * 16 14 13 18 18 C 1.41407 * 103.83748 * 180.02562 * 17 16 14 19 19 Cl 1.73594 * 126.72478 * 180.02562 * 18 17 16 20 20 N 1.30227 * 106.55192 * 0.02562 * 18 17 16 21 21 O 1.20888 * 111.95775 * 359.69975 * 20 18 17 22 22 C 1.50700 * 109.47458 * 84.99677 * 10 9 7 23 23 C 1.38238 * 120.00165 * 39.72435 * 22 10 9 24 24 C 1.38231 * 120.00210 * 179.78713 * 23 22 10 25 25 C 1.38239 * 119.99827 * 0.45049 * 24 23 22 26 26 C 1.38230 * 120.00085 * 359.80373 * 25 24 23 27 27 C 1.38236 * 120.00195 * 359.97438 * 26 25 24 28 28 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00372 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47398 * 174.99902 * 12 10 9 31 31 H 1.09001 * 109.47194 * 295.00082 * 12 10 9 32 32 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 33 33 H 1.07997 * 128.07963 * 0.04583 * 17 16 14 34 34 H 1.07999 * 119.99701 * 0.02562 * 23 22 10 35 35 H 1.07993 * 120.00090 * 180.27348 * 24 23 22 36 36 H 1.08002 * 119.99964 * 179.82854 * 25 24 23 37 37 H 1.08001 * 120.00056 * 180.02562 * 26 25 24 38 38 H 1.08002 * 120.00339 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 1.1812 -4.7524 -0.6080 13 7 0.7355 -4.3363 -1.9401 14 6 -0.0538 -5.1485 -2.6708 15 8 -0.3963 -6.2262 -2.2243 16 6 -0.5021 -4.7297 -4.0124 17 6 -1.2991 -5.4367 -4.8704 18 6 -1.4164 -4.5909 -5.9975 19 17 -2.3095 -4.9153 -7.4503 20 7 -0.7232 -3.5209 -5.7322 21 8 -0.2129 -3.5728 -4.6375 22 6 2.4154 -4.0293 1.4175 23 6 1.5081 -3.8159 2.4384 24 6 1.8343 -4.1617 3.7364 25 6 3.0713 -4.7123 4.0150 26 6 3.9805 -4.9208 2.9949 27 6 3.6527 -4.5793 1.6962 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0005 30 1 1.7562 -5.6749 -0.6889 31 1 0.3132 -4.9200 0.0296 32 1 1.0085 -3.4764 -2.2963 33 1 -1.7367 -6.4127 -4.7216 34 1 0.5430 -3.3825 2.2213 35 1 1.1238 -3.9990 4.5333 36 1 3.3272 -4.9799 5.0296 37 1 4.9468 -5.3514 3.2125 38 1 4.3632 -4.7419 0.8992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691799686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:24 Heat of formation + Delta-G solvation = 48.895049 kcal Electronic energy + Delta-G solvation = -25416.607058 eV Core-core repulsion = 21481.316548 eV Total energy + Delta-G solvation = -3935.290510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.36478 -40.94276 -40.04055 -38.28266 -37.45961 -35.43750 -34.84584 -33.86097 -33.09670 -31.65877 -31.14883 -29.15607 -26.12235 -25.09092 -24.81295 -23.84791 -23.16135 -21.98050 -21.40594 -20.02508 -19.21275 -19.14263 -17.75061 -17.50668 -17.14590 -16.86060 -16.40439 -16.21377 -15.86404 -15.69091 -15.34045 -14.98325 -14.88435 -14.54914 -14.15092 -14.03152 -13.90878 -13.81028 -13.59351 -13.38736 -12.88527 -12.76102 -12.44320 -12.25395 -12.16025 -12.00071 -11.81904 -11.64475 -11.55449 -11.25188 -11.07559 -10.95534 -10.21891 -9.63368 -9.49636 -9.00209 -7.89967 -5.18667 -0.49516 0.23465 0.60021 0.62141 0.69318 1.35185 1.51471 1.51936 1.57206 1.78551 2.09908 2.58742 2.99709 3.06225 3.45048 3.50663 3.69092 3.78879 3.83210 4.04660 4.20708 4.25434 4.38347 4.40718 4.45689 4.54492 4.72859 4.83832 4.85568 5.05229 5.17010 5.31905 5.35267 5.58588 5.73701 5.77902 5.97869 6.19679 6.28667 6.32348 6.64218 6.84013 7.39301 8.07044 8.32464 9.31823 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003308 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.526631 B = 8461.335572 C =10652.837050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.061 4.061 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.202 3.798 11 H 0.075 0.925 12 C 0.128 3.872 13 N -0.691 5.691 14 C 0.607 3.393 15 O -0.539 6.539 16 C -0.070 4.070 17 C -0.126 4.126 18 C 0.049 3.951 19 Cl 0.049 6.951 20 N -0.347 5.347 21 O 0.132 5.868 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.248 0.752 29 H 0.376 0.624 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.417 0.583 33 H 0.218 0.782 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -14.218 -5.198 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.254 4.254 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.229 1.229 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.092 3.908 11 H 0.093 0.907 12 C 0.004 3.996 13 N -0.341 5.341 14 C 0.390 3.610 15 O -0.417 6.417 16 C -0.136 4.136 17 C -0.149 4.149 18 C -0.134 4.134 19 Cl 0.077 6.923 20 N -0.048 5.048 21 O 0.056 5.944 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.143 4.143 28 H 0.057 0.943 29 H 0.209 0.791 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.235 0.765 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.090 -13.746 -5.714 15.032 hybrid contribution -0.565 1.162 0.024 1.292 sum 1.525 -12.584 -5.690 13.894 Atomic orbital electron populations 1.69772 1.06288 1.25792 1.59370 1.25303 0.96004 1.00269 1.03796 0.85450 0.77319 0.80422 0.77949 1.20341 1.22899 1.21207 1.19410 0.91236 0.84685 1.40811 0.90701 1.42496 1.05322 1.00064 1.88009 1.19588 0.95025 0.84985 0.91169 0.90716 1.21668 0.98642 0.97683 0.81560 1.45893 1.48816 1.21590 1.17773 1.16439 0.79042 0.84135 0.81362 1.90855 1.58048 1.22550 1.70290 1.24183 1.03819 0.88217 0.97356 1.23014 0.99269 1.03185 0.89443 1.24276 1.01486 0.93141 0.94461 1.98425 1.70320 1.93840 1.29709 1.73890 1.10858 1.21652 0.98406 1.85122 1.54643 1.34215 1.20427 1.20834 0.94751 0.97591 0.97169 1.20962 0.99583 0.98658 0.93517 1.21335 0.98042 0.99935 0.96284 1.21382 0.93588 0.99734 1.00256 1.21406 1.00265 1.00299 0.92550 1.21291 0.95928 0.99227 0.97863 0.94289 0.79126 0.88704 0.91910 0.74542 0.76489 0.88427 0.85601 0.84065 0.83702 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.29 13.06 21.65 0.28 -55.01 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 3 Si 0.96 44.28 29.55 68.60 2.03 46.31 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.23 -11.43 9.92 84.03 0.83 -10.60 16 8 H 0.08 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.72 -31.16 3.79 -326.50 -1.24 -32.40 16 10 C 0.20 6.76 2.65 44.25 0.12 6.88 16 11 H 0.07 2.41 7.94 -2.38 -0.02 2.39 16 12 C 0.13 3.78 5.21 86.38 0.45 4.23 16 13 N -0.69 -20.31 5.38 -466.29 -2.51 -22.82 16 14 C 0.61 17.64 7.82 86.69 0.68 18.31 16 15 O -0.54 -17.56 16.91 -3.97 -0.07 -17.63 16 16 C -0.07 -1.84 7.29 24.38 0.18 -1.66 16 17 C -0.13 -2.78 10.96 22.71 0.25 -2.53 16 18 C 0.05 1.17 7.97 85.71 0.68 1.85 16 19 Cl 0.05 0.93 29.33 -2.72 -0.08 0.85 16 20 N -0.35 -9.85 12.05 -51.03 -0.61 -10.47 16 21 O 0.13 3.79 11.04 65.80 0.73 4.51 16 22 C -0.10 -3.28 4.92 -19.86 -0.10 -3.38 16 23 C -0.11 -3.80 9.33 22.27 0.21 -3.59 16 24 C -0.14 -4.10 10.05 22.27 0.22 -3.87 16 25 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 26 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 27 C -0.12 -3.41 9.67 22.27 0.22 -3.20 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.38 17.98 7.80 -92.71 -0.72 17.25 16 30 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.42 12.85 7.96 -92.71 -0.74 12.11 16 33 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.10 3.84 7.71 -2.91 -0.02 3.81 16 35 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.14 3.08 8.04 -2.91 -0.02 3.06 16 Total: -1.00 -61.35 357.92 2.85 -58.50 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.33 Total: 34.42 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.65 Total: -6.28 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.08 Total: -120.69 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.66 Total: -13.11 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -61.35 2.85 -58.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691799686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.398 kcal (2) G-P(sol) polarization free energy of solvation -61.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds