Wall clock time and date at job start Tue Mar 31 2020 19:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48500 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46851 * 300.00346 * 3 2 1 6 6 H 1.48498 * 109.47135 * 60.00380 * 3 2 1 7 7 C 1.38814 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00097 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00194 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46610 * 35.00000 * 10 9 7 12 12 C 1.53001 * 109.47163 * 155.00140 * 10 9 7 13 13 N 1.46496 * 109.46801 * 304.99879 * 12 10 9 14 14 C 1.34776 * 119.99746 * 180.02562 * 13 12 10 15 15 O 1.21582 * 119.99949 * 359.97438 * 14 13 12 16 16 C 1.47522 * 120.00105 * 180.02562 * 14 13 12 17 17 C 1.36787 * 126.92579 * 179.97438 * 16 14 13 18 18 C 1.41413 * 103.83267 * 179.75360 * 17 16 14 19 19 Cl 1.73606 * 126.72097 * 180.24841 * 18 17 16 20 20 N 1.30221 * 106.55147 * 0.22978 * 18 17 16 21 21 O 1.20877 * 111.96083 * 359.97438 * 20 18 17 22 22 C 1.50702 * 109.46966 * 275.00437 * 10 9 7 23 23 C 1.38234 * 120.00035 * 319.71923 * 22 10 9 24 24 C 1.38234 * 120.00378 * 179.79262 * 23 22 10 25 25 C 1.38243 * 119.99433 * 0.44189 * 24 23 22 26 26 C 1.38233 * 119.99919 * 359.81412 * 25 24 23 27 27 C 1.38227 * 120.00027 * 139.99857 * 22 10 9 28 28 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 29 29 H 0.97010 * 120.00390 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46465 * 185.00376 * 12 10 9 31 31 H 1.08994 * 109.46974 * 64.99915 * 12 10 9 32 32 H 0.96999 * 120.00528 * 0.02562 * 13 12 10 33 33 H 1.08002 * 128.08639 * 0.02562 * 17 16 14 34 34 H 1.08004 * 119.99984 * 0.02562 * 23 22 10 35 35 H 1.07991 * 120.00628 * 180.27853 * 24 23 22 36 36 H 1.07998 * 119.99612 * 179.83608 * 25 24 23 37 37 H 1.08001 * 119.99488 * 180.02562 * 26 25 24 38 38 H 1.08006 * 120.00104 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9693 -3.5508 0.5872 12 6 1.1813 -4.7524 0.6081 13 7 0.7358 -4.3363 1.9402 14 6 -0.0526 -5.1488 2.6714 15 8 -0.3945 -6.2269 2.2252 16 6 -0.5018 -4.7296 4.0126 17 6 -1.2988 -5.4366 4.8705 18 6 -1.4127 -4.5924 5.9993 19 17 -2.2989 -4.9205 7.4557 20 7 -0.7223 -3.5210 5.7325 21 8 -0.2114 -3.5733 4.6382 22 6 2.4155 -4.0292 -1.4175 23 6 1.5039 -3.8264 -2.4367 24 6 1.8332 -4.1640 -3.7361 25 6 3.0709 -4.7130 -4.0149 26 6 3.9805 -4.9207 -2.9950 27 6 3.6527 -4.5790 -1.6963 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 1.7564 -5.6749 0.6890 31 1 0.3133 -4.9200 -0.0294 32 1 1.0083 -3.4761 2.2961 33 1 -1.7352 -6.4133 4.7224 34 1 0.5356 -3.4006 -2.2183 35 1 1.1227 -4.0013 -4.5329 36 1 3.3272 -4.9792 -5.0297 37 1 4.9476 -5.3492 -3.2130 38 1 4.3635 -4.7413 -0.8994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691799687.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:29 Heat of formation + Delta-G solvation = 65.331492 kcal Electronic energy + Delta-G solvation = -25415.505183 eV Core-core repulsion = 21480.927411 eV Total energy + Delta-G solvation = -3934.577772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.33186 -39.71507 -38.83046 -37.37942 -36.09570 -34.10158 -33.66421 -32.44992 -31.84063 -30.45966 -29.61789 -27.82268 -24.71072 -23.79758 -23.50615 -22.64277 -21.96939 -20.86185 -20.12149 -18.84563 -18.10008 -17.40363 -16.56257 -16.37529 -15.97001 -15.44136 -15.26665 -14.81195 -14.65977 -14.21872 -14.02200 -13.87825 -13.44836 -13.14003 -12.98497 -12.91150 -12.84331 -12.61173 -12.43130 -12.07875 -11.33119 -11.22267 -10.99995 -10.89074 -10.79768 -10.51902 -10.36971 -10.29746 -10.14068 -10.00846 -9.84960 -9.13878 -8.99242 -8.45545 -8.24968 -7.18702 -5.90506 -3.22510 0.57408 1.17911 1.59036 1.80514 1.87974 2.42921 2.93554 3.22459 3.37159 3.43977 3.45430 4.03128 4.25201 4.47475 4.48361 4.74663 4.85860 5.15739 5.29523 5.33712 5.40508 5.42492 5.46325 5.53916 5.69366 5.75023 5.97361 6.02717 6.13332 6.29445 6.38854 6.50593 6.56841 6.88478 6.96860 7.22222 7.37905 7.48042 7.61370 7.72167 8.03588 8.25133 9.38711 9.86609 10.22814 11.30794 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010317 B = 0.003308 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.394853 B = 8461.284543 C =10653.546643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.714 5.714 10 C 0.197 3.803 11 H 0.069 0.931 12 C 0.118 3.882 13 N -0.691 5.691 14 C 0.601 3.399 15 O -0.519 6.519 16 C -0.058 4.058 17 C -0.144 4.144 18 C 0.048 3.952 19 Cl 0.028 6.972 20 N -0.326 5.326 21 O 0.146 5.854 22 C -0.082 4.082 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.120 4.120 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.419 0.581 33 H 0.193 0.807 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -12.659 5.294 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.086 3.914 11 H 0.086 0.914 12 C -0.006 4.006 13 N -0.342 5.342 14 C 0.383 3.617 15 O -0.396 6.396 16 C -0.124 4.124 17 C -0.168 4.168 18 C -0.135 4.135 19 Cl 0.056 6.944 20 N -0.025 5.025 21 O 0.068 5.932 22 C -0.086 4.086 23 C -0.102 4.102 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.210 0.790 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.541 -12.159 5.819 13.490 hybrid contribution -0.133 0.808 -0.054 0.821 sum 0.409 -11.350 5.765 12.737 Atomic orbital electron populations 1.69655 1.05092 1.25878 1.56762 1.24719 0.95433 0.97687 1.02150 0.86162 0.78922 0.84106 0.77220 1.20485 1.21864 1.21752 1.19209 0.91071 0.83592 1.43808 0.90940 1.42480 1.05804 0.99264 1.87987 1.19488 0.95067 0.86360 0.90455 0.91357 1.21780 0.99226 0.97765 0.81815 1.45908 1.48771 1.21654 1.17830 1.16417 0.79616 0.84589 0.81103 1.90870 1.57314 1.21790 1.69636 1.24340 1.02646 0.87885 0.97511 1.22682 1.00811 1.02782 0.90500 1.24040 1.02231 0.93657 0.93568 1.98414 1.71441 1.93952 1.30626 1.73900 1.09907 1.20479 0.98180 1.85140 1.53952 1.33820 1.20256 1.20937 0.93667 0.95964 0.98066 1.21010 1.00063 0.97053 0.92033 1.21111 0.96762 0.99884 0.96794 1.20995 0.94519 1.01096 0.98558 1.20989 0.99034 1.01500 0.93275 1.21012 0.96637 0.99774 0.96407 0.93362 0.77829 0.90652 0.90771 0.74263 0.78975 0.85870 0.86835 0.87077 0.86973 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.09 9.92 -15.06 -0.15 -6.24 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -15.18 3.81 -54.55 -0.21 -15.39 16 10 C 0.20 3.33 2.64 -69.08 -0.18 3.15 16 11 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 12 C 0.12 1.75 5.21 -4.04 -0.02 1.73 16 13 N -0.69 -10.10 5.38 -61.36 -0.33 -10.43 16 14 C 0.60 8.78 7.82 -12.48 -0.10 8.69 16 15 O -0.52 -8.61 16.91 5.29 0.09 -8.52 16 16 C -0.06 -0.77 7.29 -36.32 -0.26 -1.03 16 17 C -0.14 -1.69 10.96 -38.90 -0.43 -2.12 16 18 C 0.05 0.59 7.97 -17.03 -0.14 0.46 16 19 Cl 0.03 0.28 29.33 -51.86 -1.52 -1.24 16 20 N -0.33 -4.68 12.05 32.82 0.40 -4.29 16 21 O 0.15 2.09 11.04 15.55 0.17 2.26 16 22 C -0.08 -1.38 4.92 -104.63 -0.51 -1.89 16 23 C -0.08 -1.44 9.32 -39.58 -0.37 -1.81 16 24 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 25 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 27 C -0.12 -1.78 9.67 -39.59 -0.38 -2.16 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 8.90 7.80 -40.82 -0.32 8.58 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.42 6.34 7.96 -40.82 -0.33 6.01 16 33 H 0.19 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 2.27 7.73 -52.48 -0.41 1.87 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.49 8.04 -52.48 -0.42 1.06 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -28.50 357.94 -8.11 -36.60 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -3.97 Total: 12.67 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.83 Total: -8.21 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.58 Total: -55.22 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.26 Total: -6.26 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.50 -8.11 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691799687.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.935 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds