Wall clock time and date at job start Tue Mar 31 2020 18:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21695 * 120.00017 * 0.02562 * 16 15 14 18 18 C 1.46680 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.37867 * 126.23582 * 179.71187 * 18 16 15 20 20 C 1.39830 * 107.08742 * 179.85129 * 19 18 16 21 21 S 1.76203 * 126.06981 * 180.15856 * 20 19 18 22 22 O 1.42098 * 106.40161 * 23.82571 * 21 20 19 23 23 O 1.42101 * 106.40161 * 156.74188 * 21 20 19 24 24 F 1.60995 * 107.22033 * 270.28200 * 21 20 19 25 25 C 1.35459 * 107.86541 * 0.42252 * 20 19 18 26 26 N 1.35538 * 108.86569 * 359.73727 * 25 20 19 27 27 H 0.96999 * 125.67588 * 179.97438 * 26 25 20 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 31 31 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 32 32 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 34 34 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 35 35 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 36 36 H 1.08003 * 126.45267 * 0.02562 * 19 18 16 37 37 H 1.07989 * 125.56789 * 179.76413 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3875 -6.2322 2.2183 18 6 -0.4862 -4.7397 4.0015 19 6 -1.2918 -5.4639 4.8543 20 6 -1.4555 -4.6991 6.0134 21 16 -2.3932 -5.1555 7.4336 22 8 -2.4629 -6.5748 7.4293 23 8 -1.8661 -4.4066 8.5202 24 9 -3.8959 -4.6258 7.2030 25 6 -0.7701 -3.5424 5.8483 26 7 -0.1766 -3.5547 4.6298 27 1 0.3743 -2.8463 4.2617 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.9641 -3.2122 -1.9146 31 1 3.0368 -4.9285 -1.4486 32 1 1.3708 -4.5275 -3.1130 33 1 0.3130 -4.9200 -0.0361 34 1 1.7583 -5.6761 0.6765 35 1 1.0152 -3.4802 2.2898 36 1 -1.7143 -6.4395 4.6640 37 1 -0.7065 -2.7415 6.5699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717777565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:53 Heat of formation + Delta-G solvation = -157.508633 kcal Electronic energy + Delta-G solvation = -26356.617306 eV Core-core repulsion = 21983.650942 eV Total energy + Delta-G solvation = -4372.966364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -48.30390 -41.76159 -39.20542 -37.78433 -37.33580 -36.46308 -35.20542 -33.98904 -32.06083 -31.45097 -29.95941 -28.17692 -25.70711 -23.69297 -22.88093 -22.45484 -20.55060 -20.46160 -20.25829 -19.11267 -17.89124 -17.82405 -16.90781 -16.86769 -16.72970 -16.12382 -15.99989 -15.54338 -14.79684 -14.62541 -14.54173 -14.40983 -14.03607 -13.91754 -13.80339 -13.58505 -13.45316 -13.17745 -13.06360 -13.02800 -12.65826 -12.55665 -12.03483 -11.80228 -11.65208 -11.04397 -10.90655 -10.62777 -10.17536 -10.13269 -10.07565 -9.64031 -9.35287 -9.16219 -9.07433 -8.74344 -7.29067 -6.30734 -3.33807 -0.27770 1.13362 1.55375 2.57176 2.86612 3.15633 3.21317 3.30521 3.35571 3.39201 3.56988 3.83168 4.45861 4.49227 4.68125 4.72729 4.76680 5.12656 5.20400 5.27334 5.37332 5.43009 5.66864 5.78119 5.80472 5.95735 6.08201 6.22318 6.25105 6.46999 6.54337 6.81638 7.54190 7.56703 8.01370 8.15899 8.54284 8.97806 9.84834 10.00153 11.16168 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002953 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.139379 B = 9480.659027 C =11035.464545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.079 2.921 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.343 4.343 8 H 0.065 0.935 9 N -0.726 5.726 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.563 6.563 14 C 0.117 3.883 15 N -0.712 5.712 16 C 0.583 3.417 17 O -0.531 6.531 18 C -0.042 4.042 19 C -0.023 4.023 20 C -0.777 4.777 21 S 2.702 3.298 22 O -0.930 6.930 23 O -0.937 6.937 24 F -0.475 7.475 25 C 0.159 3.841 26 N -0.516 5.516 27 H 0.432 0.568 28 H 0.257 0.743 29 H 0.371 0.629 30 H 0.050 0.950 31 H 0.029 0.971 32 H 0.366 0.634 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.169 0.831 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -8.148 10.674 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.237 4.237 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.474 4.474 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.363 5.363 16 C 0.369 3.631 17 O -0.408 6.408 18 C -0.155 4.155 19 C -0.048 4.048 20 C -0.873 4.873 21 S 2.791 3.209 22 O -0.928 6.928 23 O -0.935 6.935 24 F -0.475 7.475 25 C 0.013 3.987 26 N -0.110 5.110 27 H 0.272 0.728 28 H 0.068 0.932 29 H 0.205 0.795 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.211 0.789 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.186 0.814 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.566 -7.186 11.324 13.424 hybrid contribution 1.109 -0.686 -1.415 1.924 sum 0.543 -7.872 9.909 12.667 Atomic orbital electron populations 1.70890 1.06053 1.28658 1.52431 1.25770 0.96969 1.00954 0.99987 0.83261 0.74254 0.75671 0.75903 1.20981 1.22251 1.22226 1.20024 0.91948 0.85668 1.49732 0.91721 1.42400 1.05051 1.00076 1.89360 1.20542 0.94910 0.86402 0.92171 0.91513 1.22993 0.86508 0.97509 0.95171 1.86537 1.32128 1.92032 1.25913 1.21652 0.99893 0.97296 0.81820 1.45896 1.50786 1.21289 1.18310 1.16927 0.78901 0.84607 0.82695 1.90852 1.56980 1.21964 1.70976 1.20838 1.08977 0.89134 0.96508 1.20918 0.95793 0.98942 0.89159 1.30502 1.27493 1.07358 1.21900 1.02800 0.70258 0.74097 0.73770 1.93736 1.85517 1.27260 1.86326 1.93727 1.77330 1.72863 1.49602 1.93679 1.64367 1.93351 1.96085 1.21949 0.92173 0.97320 0.87282 1.42523 1.38243 1.16387 1.13800 0.72831 0.93200 0.79482 0.93155 0.95252 0.78853 0.90208 0.91474 0.76187 0.81368 0.78614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -26.79 13.70 55.49 0.76 -26.03 16 2 C -0.04 -1.00 5.50 -17.43 -0.10 -1.10 16 3 Si 1.08 23.74 29.92 -169.99 -5.09 18.66 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.30 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.34 -8.54 9.93 -15.06 -0.15 -8.69 16 8 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 9 N -0.73 -15.98 4.51 -53.43 -0.24 -16.22 16 10 C 0.17 3.00 2.84 -67.93 -0.19 2.81 16 11 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 12 C 0.06 0.97 6.86 37.16 0.25 1.23 16 13 O -0.56 -9.45 12.64 -35.23 -0.45 -9.90 16 14 C 0.12 1.91 5.12 -4.04 -0.02 1.89 16 15 N -0.71 -10.86 5.38 -61.62 -0.33 -11.19 16 16 C 0.58 9.21 7.79 -12.85 -0.10 9.11 16 17 O -0.53 -9.95 16.88 5.19 0.09 -9.87 16 18 C -0.04 -0.56 7.06 -81.98 -0.58 -1.13 16 19 C -0.02 -0.28 10.45 -39.12 -0.41 -0.69 16 20 C -0.78 -7.67 6.23 -39.98 -0.25 -7.92 16 21 S 2.70 24.02 7.00 -107.50 -0.75 23.27 16 22 O -0.93 -10.97 17.89 -57.17 -1.02 -11.99 16 23 O -0.94 -9.88 17.87 -57.17 -1.02 -10.90 16 24 F -0.48 -4.23 17.91 2.25 0.04 -4.19 16 25 C 0.16 1.37 11.64 -16.91 -0.20 1.17 16 26 N -0.52 -5.18 5.99 -9.39 -0.06 -5.24 16 27 H 0.43 3.63 8.19 -40.82 -0.33 3.29 16 28 H 0.26 7.34 6.77 -40.82 -0.28 7.07 16 29 H 0.37 8.91 6.63 -40.82 -0.27 8.64 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.37 4.39 9.12 45.56 0.42 4.80 16 33 H 0.08 1.48 7.39 -51.93 -0.38 1.09 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 5.86 7.27 -40.82 -0.30 5.56 16 36 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.20 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -36.52 346.23 -7.47 -44.00 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -2.89 Total: 17.69 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.74 Total: -3.32 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.13 Total: -58.67 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.40 Total: -42.65 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.09 Total: 18.66 kcal Atomic # 16 Polarization: 24.02 SS G_CDS: -0.75 Total: 23.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.52 -7.47 -44.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717777565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.513 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds