Wall clock time and date at job start Tue Mar 31 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21695 * 120.00017 * 0.02562 * 16 15 14 18 18 C 1.46680 * 120.00113 * 179.97438 * 16 15 14 19 19 C 1.37867 * 126.23582 * 179.71187 * 18 16 15 20 20 C 1.39830 * 107.08742 * 179.85129 * 19 18 16 21 21 S 1.76203 * 126.06981 * 180.15856 * 20 19 18 22 22 O 1.42098 * 106.40161 * 23.82571 * 21 20 19 23 23 O 1.42101 * 106.40161 * 156.74188 * 21 20 19 24 24 F 1.60995 * 107.22033 * 270.28200 * 21 20 19 25 25 C 1.35459 * 107.86541 * 0.42252 * 20 19 18 26 26 N 1.35538 * 108.86569 * 359.73727 * 25 20 19 27 27 H 0.96999 * 125.67588 * 179.97438 * 26 25 20 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 31 31 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 32 32 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 34 34 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 35 35 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 36 36 H 1.08003 * 126.45267 * 0.02562 * 19 18 16 37 37 H 1.07989 * 125.56789 * 179.76413 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3875 -6.2322 2.2183 18 6 -0.4862 -4.7397 4.0015 19 6 -1.2918 -5.4639 4.8543 20 6 -1.4555 -4.6991 6.0134 21 16 -2.3932 -5.1555 7.4336 22 8 -2.4629 -6.5748 7.4293 23 8 -1.8661 -4.4066 8.5202 24 9 -3.8959 -4.6258 7.2030 25 6 -0.7701 -3.5424 5.8483 26 7 -0.1766 -3.5547 4.6298 27 1 0.3743 -2.8463 4.2617 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.9641 -3.2122 -1.9146 31 1 3.0368 -4.9285 -1.4486 32 1 1.3708 -4.5275 -3.1130 33 1 0.3130 -4.9200 -0.0361 34 1 1.7583 -5.6761 0.6765 35 1 1.0152 -3.4802 2.2898 36 1 -1.7143 -6.4395 4.6640 37 1 -0.7065 -2.7415 6.5699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717777565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:52 Heat of formation + Delta-G solvation = -191.014335 kcal Electronic energy + Delta-G solvation = -26358.070222 eV Core-core repulsion = 21983.650942 eV Total energy + Delta-G solvation = -4374.419280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.06415 -42.65338 -40.45321 -38.74798 -38.61919 -37.30680 -36.61999 -35.57754 -33.40583 -32.58155 -31.01790 -29.74159 -26.96174 -25.57346 -23.87777 -23.36952 -21.92540 -21.45971 -21.02998 -20.24486 -19.56372 -18.66331 -18.29112 -17.70389 -17.69910 -17.25543 -17.18113 -16.72812 -16.16054 -15.95850 -15.50670 -15.42972 -15.29903 -15.19433 -15.05890 -14.79395 -14.72131 -14.44631 -13.87501 -13.86968 -13.54846 -13.51475 -13.41410 -13.12000 -12.74839 -12.66960 -12.56775 -12.13535 -11.90788 -11.45858 -11.30748 -10.99811 -10.90667 -10.81744 -10.34215 -9.72075 -9.15569 -8.35380 -5.32233 -1.04994 0.19173 0.70910 1.60894 1.68470 1.75161 1.84807 1.95835 2.06455 2.16912 2.52042 2.70351 3.04241 3.39959 3.47342 3.62902 3.69281 3.84433 3.89196 3.96738 4.26110 4.30011 4.42847 4.50028 4.57718 4.71060 4.85592 5.06478 5.08063 5.22740 5.34623 5.61323 6.04934 6.33578 6.49697 6.91556 6.95218 7.06745 7.96133 8.10597 9.14407 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002953 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.139379 B = 9480.659027 C =11035.464545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.096 4.096 3 Si 1.124 2.876 4 H -0.301 1.301 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.328 4.328 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.080 0.920 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.128 3.872 15 N -0.708 5.708 16 C 0.582 3.418 17 O -0.569 6.569 18 C -0.072 4.072 19 C -0.028 4.028 20 C -0.786 4.786 21 S 2.743 3.257 22 O -0.958 6.958 23 O -0.946 6.946 24 F -0.471 7.471 25 C 0.182 3.818 26 N -0.512 5.512 27 H 0.439 0.561 28 H 0.242 0.758 29 H 0.359 0.641 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.387 0.613 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.407 0.593 36 H 0.166 0.834 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -7.648 11.828 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.288 4.288 3 Si 0.950 3.050 4 H -0.227 1.227 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.459 4.459 8 H 0.090 0.910 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.097 0.903 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.004 3.996 15 N -0.358 5.358 16 C 0.370 3.630 17 O -0.449 6.449 18 C -0.183 4.183 19 C -0.053 4.053 20 C -0.880 4.880 21 S 2.831 3.169 22 O -0.956 6.956 23 O -0.945 6.945 24 F -0.471 7.471 25 C 0.035 3.965 26 N -0.107 5.107 27 H 0.281 0.719 28 H 0.053 0.947 29 H 0.191 0.809 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.184 0.816 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.840 -6.722 12.460 14.183 hybrid contribution 0.692 -0.920 -1.759 2.102 sum 1.532 -7.643 10.702 13.239 Atomic orbital electron populations 1.71006 1.07305 1.27812 1.55919 1.26969 0.96911 1.04264 1.00671 0.82654 0.73304 0.71962 0.77091 1.22740 1.19762 1.21230 1.20336 0.92347 0.86529 1.46685 0.91003 1.42497 1.04513 1.01004 1.89559 1.20778 0.94988 0.84870 0.93564 0.90260 1.22861 0.86553 0.98676 0.93637 1.86495 1.32783 1.92179 1.27733 1.21465 0.98794 0.97465 0.81863 1.45819 1.50745 1.21375 1.17890 1.17250 0.78196 0.84013 0.83514 1.90818 1.58395 1.23510 1.72142 1.20470 1.10945 0.90993 0.95926 1.21091 0.95251 0.99102 0.89903 1.30563 1.28335 1.07707 1.21385 1.01578 0.69584 0.72885 0.72804 1.93698 1.85958 1.29327 1.86662 1.93707 1.77688 1.72983 1.50079 1.93667 1.64123 1.93239 1.96055 1.22756 0.89468 0.97500 0.86783 1.42502 1.38432 1.15641 1.14099 0.71945 0.94717 0.80943 0.94662 0.91457 0.76479 0.92688 0.89873 0.75727 0.81640 0.74271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.45 13.70 21.65 0.30 -56.15 16 2 C -0.10 -5.03 5.50 84.86 0.47 -4.56 16 3 Si 1.12 47.23 29.92 68.60 2.05 49.29 16 4 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -16.04 9.93 84.03 0.83 -15.21 16 8 H 0.07 3.37 7.83 -2.91 -0.02 3.35 16 9 N -0.73 -32.15 4.51 -322.94 -1.46 -33.60 16 10 C 0.17 5.69 2.84 44.99 0.13 5.82 16 11 H 0.08 2.52 8.08 -2.38 -0.02 2.50 16 12 C 0.06 1.96 6.86 71.98 0.49 2.45 16 13 O -0.59 -19.15 12.64 -148.98 -1.88 -21.03 16 14 C 0.13 4.14 5.12 86.38 0.44 4.58 16 15 N -0.71 -21.57 5.38 -467.07 -2.51 -24.08 16 16 C 0.58 18.64 7.79 86.45 0.67 19.32 16 17 O -0.57 -21.89 16.88 -4.33 -0.07 -21.97 16 18 C -0.07 -1.86 7.06 40.35 0.28 -1.58 16 19 C -0.03 -0.67 10.45 22.57 0.24 -0.43 16 20 C -0.79 -14.16 6.23 22.01 0.14 -14.02 16 21 S 2.74 44.31 7.00 -56.49 -0.40 43.92 16 22 O -0.96 -21.78 17.89 -128.00 -2.29 -24.07 16 23 O -0.95 -17.71 17.87 -128.00 -2.29 -19.99 16 24 F -0.47 -7.58 17.91 44.97 0.81 -6.77 16 25 C 0.18 2.62 11.64 83.48 0.97 3.60 16 26 N -0.51 -9.49 5.99 -183.62 -1.10 -10.59 16 27 H 0.44 6.71 8.19 -92.71 -0.76 5.95 16 28 H 0.24 14.26 6.77 -92.71 -0.63 13.63 16 29 H 0.36 17.54 6.63 -92.71 -0.61 16.92 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.39 8.78 9.12 -74.06 -0.68 8.11 16 33 H 0.05 2.07 7.39 -2.39 -0.02 2.05 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.41 11.71 7.27 -92.71 -0.67 11.03 16 36 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.24 1.19 8.06 -2.92 -0.02 1.17 16 Total: -1.00 -78.70 346.23 -5.57 -84.28 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -1.40 Total: 40.82 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.67 Total: -0.04 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -4.77 Total: -124.42 kcal Atomic # 8 Polarization: -80.53 SS G_CDS: -6.53 Total: -87.06 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.81 Total: -6.77 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.05 Total: 49.29 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.40 Total: 43.92 kcal Total: -78.70 -5.57 -84.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717777565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.737 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds