Wall clock time and date at job start Wed Apr 1 2020 00:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99622 * 2 1 4 4 O 1.20829 * 120.00041 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47514 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99666 * 270.00569 * 6 5 3 8 8 H 1.07998 * 120.00714 * 10.57703 * 7 6 5 9 9 C 1.38955 * 119.99617 * 190.58702 * 7 6 5 10 10 N 1.31408 * 120.00423 * 18.82411 * 9 7 6 11 11 Si 1.86806 * 119.99842 * 198.82574 * 9 7 6 12 12 H 1.48503 * 109.47097 * 89.99672 * 11 9 7 13 13 H 1.48499 * 109.46877 * 209.99935 * 11 9 7 14 14 H 1.48498 * 109.47052 * 329.99971 * 11 9 7 15 15 C 1.34773 * 120.00331 * 89.99664 * 6 5 3 16 16 O 1.21283 * 120.00488 * 241.58885 * 15 6 5 17 17 C 1.50702 * 119.99580 * 61.58279 * 15 6 5 18 18 H 1.08991 * 108.50109 * 337.97865 * 17 15 6 19 19 C 1.51871 * 108.65547 * 95.95387 * 17 15 6 20 20 C 1.53535 * 109.05875 * 181.32380 * 19 17 15 21 21 S 1.81571 * 107.30085 * 287.43659 * 20 19 17 22 22 C 1.76473 * 102.66125 * 46.30505 * 21 20 19 23 23 C 1.39623 * 117.71528 * 167.30075 * 22 21 20 24 24 C 1.37747 * 120.62431 * 179.28189 * 23 22 21 25 25 C 1.38337 * 119.50940 * 0.02562 * 24 23 22 26 26 C 1.37766 * 120.01018 * 0.26721 * 25 24 23 27 27 C 1.38180 * 122.29948 * 347.08285 * 22 21 20 28 28 H 1.09005 * 109.46575 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46975 * 299.99807 * 1 2 3 30 30 H 1.08990 * 109.47304 * 60.00240 * 1 2 3 31 31 H 1.09004 * 109.47158 * 60.00085 * 5 3 2 32 32 H 1.09004 * 109.47590 * 300.00192 * 5 3 2 33 33 H 0.96998 * 120.00289 * 185.19379 * 10 9 7 34 34 H 1.09006 * 109.54939 * 301.21860 * 19 17 15 35 35 H 1.09003 * 109.55466 * 61.41907 * 19 17 15 36 36 H 1.09000 * 109.89393 * 46.80871 * 20 19 17 37 37 H 1.09000 * 109.89632 * 167.92465 * 20 19 17 38 38 H 1.08002 * 119.69326 * 359.25950 * 23 22 21 39 39 H 1.08001 * 120.24284 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.99826 * 180.25749 * 25 24 23 41 41 H 1.08002 * 119.46448 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.1754 3.3379 -1.1868 8 1 3.8611 2.8827 -2.1144 9 6 4.7764 4.5908 -1.1965 10 7 5.4833 4.9885 -0.1626 11 14 4.5793 5.7097 -2.6793 12 1 3.3768 6.5624 -2.4997 13 1 5.7816 6.5711 -2.8126 14 1 4.4229 4.8851 -3.9044 15 6 4.1732 3.3254 1.1676 16 8 3.4961 4.2930 1.4438 17 6 5.2286 2.8448 2.1300 18 1 5.4405 1.7973 1.9160 19 6 6.4950 3.6524 1.9052 20 6 7.5873 3.1477 2.8588 21 16 7.1481 3.7093 4.5286 22 6 5.4339 3.3040 4.6347 23 6 4.8313 3.3546 5.8931 24 6 3.4931 3.0642 6.0425 25 6 2.7427 2.7191 4.9328 26 6 3.3356 2.6624 3.6906 27 6 4.6889 2.9500 3.5260 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 3.9557 0.7811 -0.8909 32 1 3.9564 0.7807 0.8891 33 1 5.8397 5.8902 -0.1367 34 1 6.8265 3.5314 0.8739 35 1 6.2959 4.7057 2.1033 36 1 7.6275 2.0587 2.8336 37 1 8.5530 3.5622 2.5692 38 1 5.4199 3.6235 6.7578 39 1 3.0332 3.1056 7.0188 40 1 1.6919 2.4939 5.0403 41 1 2.7415 2.3916 2.8302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358564987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:20 Heat of formation + Delta-G solvation = -60.204093 kcal Electronic energy + Delta-G solvation = -27942.508265 eV Core-core repulsion = 24108.070911 eV Total energy + Delta-G solvation = -3834.437354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 15.15 seconds Orbital eigenvalues (eV) -40.11308 -39.49346 -37.97534 -35.95723 -34.68364 -34.28902 -31.98508 -30.68196 -30.30872 -28.56464 -27.29067 -26.42331 -24.33435 -22.67274 -22.28884 -21.25875 -20.56302 -18.96085 -17.35593 -17.21244 -17.06130 -16.30647 -15.95286 -15.58243 -15.27717 -15.23387 -14.76066 -14.36123 -14.19434 -13.84711 -13.40698 -13.15797 -13.09327 -12.93958 -12.80727 -12.35352 -12.17506 -11.98252 -11.80987 -11.67644 -11.43084 -11.16005 -11.01894 -10.96319 -10.67733 -10.55869 -10.40149 -10.21955 -10.07952 -10.00523 -9.66256 -9.30755 -9.16350 -8.52544 -8.33674 -7.54467 -7.04323 -6.24383 -3.67961 1.54791 1.67411 1.97865 2.74999 2.81831 3.04450 3.26040 3.35773 3.38995 3.73321 3.99957 4.24873 4.73718 5.06229 5.12762 5.19550 5.24861 5.28949 5.34306 5.36812 5.38740 5.48676 5.56383 5.60929 5.70157 5.74586 5.80930 5.88211 5.91829 5.99214 6.13275 6.26602 6.46129 6.56154 6.72402 6.79167 6.83390 6.91047 7.20465 7.31155 7.46008 7.94260 8.36789 8.88133 9.14757 9.40337 9.81695 10.85704 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.006205 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.738935 B = 4511.403749 C = 6579.000295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.418 3.582 4 O -0.479 6.479 5 C 0.145 3.855 6 N -0.535 5.535 7 C -0.293 4.293 8 H 0.086 0.914 9 C 0.031 3.969 10 N -0.880 5.880 11 Si 0.916 3.084 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.593 3.407 16 O -0.486 6.486 17 C -0.074 4.074 18 H 0.081 0.919 19 C -0.077 4.077 20 C -0.103 4.103 21 S -0.150 6.150 22 C -0.066 4.066 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.089 4.089 27 C -0.054 4.054 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.270 0.730 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -9.959 6.901 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.290 6.290 3 C 0.256 3.744 4 O -0.362 6.362 5 C 0.016 3.984 6 N -0.264 5.264 7 C -0.419 4.419 8 H 0.103 0.897 9 C -0.171 4.171 10 N -0.522 5.522 11 Si 0.744 3.256 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.381 3.619 16 O -0.356 6.356 17 C -0.097 4.097 18 H 0.099 0.901 19 C -0.116 4.116 20 C -0.251 4.251 21 S 0.092 5.908 22 C -0.179 4.179 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.109 4.109 27 C -0.061 4.061 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.832 -8.380 7.830 11.499 hybrid contribution -1.345 0.166 -1.722 2.191 sum -0.513 -8.213 6.108 10.248 Atomic orbital electron populations 1.23102 0.77983 1.02656 1.02136 1.86546 1.22342 1.35011 1.85073 1.25974 0.94181 0.81134 0.73118 1.90710 1.66591 1.36133 1.42795 1.20437 0.85994 0.87421 1.04560 1.42535 1.71215 1.07236 1.05398 1.19215 1.36263 1.02230 0.84214 0.89651 1.24845 0.95333 0.98291 0.98605 1.69461 1.32571 1.18447 1.31681 0.86109 0.77609 0.80627 0.81285 1.20902 1.21341 1.20160 1.18981 0.80974 0.82049 0.79893 1.90480 1.44068 1.27646 1.73402 1.20209 0.98103 1.00912 0.90457 0.90127 1.21503 0.89284 1.00405 1.00424 1.24043 1.03608 1.03655 0.93815 1.85067 1.04519 1.79005 1.22181 1.21213 0.96757 1.04410 0.95505 1.20777 0.95206 1.01898 0.95158 1.20896 0.93599 1.00360 0.98479 1.20959 0.99609 1.01199 0.92690 1.21232 0.93855 0.98512 0.97329 1.19474 0.93919 0.99213 0.93451 0.88863 0.92510 0.92407 0.87340 0.88977 0.91861 0.86883 0.89240 0.89791 0.87474 0.85997 0.85954 0.86314 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.90 10.57 -39.26 -0.41 -6.32 16 3 C 0.42 8.04 8.02 36.00 0.29 8.33 16 4 O -0.48 -11.34 16.18 -18.75 -0.30 -11.64 16 5 C 0.15 2.64 6.08 -5.20 -0.03 2.61 16 6 N -0.54 -12.52 2.06 -116.10 -0.24 -12.75 16 7 C -0.29 -7.53 9.67 -14.93 -0.14 -7.67 16 8 H 0.09 2.12 7.90 -52.49 -0.41 1.71 16 9 C 0.03 0.81 5.02 -17.47 -0.09 0.72 16 10 N -0.88 -23.12 7.43 55.50 0.41 -22.71 16 11 Si 0.92 21.37 29.60 -169.99 -5.03 16.34 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.59 14.26 2.13 -10.99 -0.02 14.23 16 16 O -0.49 -13.91 15.41 5.55 0.09 -13.83 16 17 C -0.07 -1.49 2.26 -93.81 -0.21 -1.70 16 18 H 0.08 1.44 6.98 -51.93 -0.36 1.07 16 19 C -0.08 -1.51 3.70 -27.03 -0.10 -1.61 16 20 C -0.10 -1.59 6.53 37.43 0.24 -1.34 16 21 S -0.15 -2.43 21.99 -107.50 -2.36 -4.80 16 22 C -0.07 -1.19 6.05 -39.09 -0.24 -1.42 16 23 C -0.11 -1.68 9.65 -39.24 -0.38 -2.06 16 24 C -0.11 -1.66 10.06 -39.72 -0.40 -2.06 16 25 C -0.12 -2.01 10.03 -39.72 -0.40 -2.40 16 26 C -0.09 -1.70 8.35 -39.35 -0.33 -2.03 16 27 C -0.05 -1.05 5.27 -104.56 -0.55 -1.61 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.11 1.71 8.04 -51.93 -0.42 1.29 16 32 H 0.09 1.40 6.95 -51.93 -0.36 1.04 16 33 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 34 H 0.11 2.39 6.88 -51.93 -0.36 2.03 16 35 H 0.09 2.03 7.49 -51.93 -0.39 1.64 16 36 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.12 1.64 8.05 -52.49 -0.42 1.22 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.35 6.75 -52.49 -0.35 2.00 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -32.75 352.05 -9.01 -41.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.17 Total: 5.13 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.29 Total: 3.51 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.17 Total: -35.46 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.63 Total: -31.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.36 Total: -4.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.75 -9.01 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358564987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.445 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.15 seconds