Wall clock time and date at job start Wed Apr 1 2020 00:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99622 * 2 1 4 4 O 1.20829 * 120.00041 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47514 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99666 * 270.00569 * 6 5 3 8 8 H 1.07998 * 120.00714 * 10.57703 * 7 6 5 9 9 C 1.38955 * 119.99617 * 190.58702 * 7 6 5 10 10 N 1.31408 * 120.00423 * 18.82411 * 9 7 6 11 11 Si 1.86806 * 119.99842 * 198.82574 * 9 7 6 12 12 H 1.48503 * 109.47097 * 89.99672 * 11 9 7 13 13 H 1.48499 * 109.46877 * 209.99935 * 11 9 7 14 14 H 1.48498 * 109.47052 * 329.99971 * 11 9 7 15 15 C 1.34773 * 120.00331 * 89.99664 * 6 5 3 16 16 O 1.21283 * 120.00488 * 241.58885 * 15 6 5 17 17 C 1.50702 * 119.99580 * 61.58279 * 15 6 5 18 18 H 1.08991 * 108.50109 * 337.97865 * 17 15 6 19 19 C 1.51871 * 108.65547 * 95.95387 * 17 15 6 20 20 C 1.53535 * 109.05875 * 181.32380 * 19 17 15 21 21 S 1.81571 * 107.30085 * 287.43659 * 20 19 17 22 22 C 1.76473 * 102.66125 * 46.30505 * 21 20 19 23 23 C 1.39623 * 117.71528 * 167.30075 * 22 21 20 24 24 C 1.37747 * 120.62431 * 179.28189 * 23 22 21 25 25 C 1.38337 * 119.50940 * 0.02562 * 24 23 22 26 26 C 1.37766 * 120.01018 * 0.26721 * 25 24 23 27 27 C 1.38180 * 122.29948 * 347.08285 * 22 21 20 28 28 H 1.09005 * 109.46575 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46975 * 299.99807 * 1 2 3 30 30 H 1.08990 * 109.47304 * 60.00240 * 1 2 3 31 31 H 1.09004 * 109.47158 * 60.00085 * 5 3 2 32 32 H 1.09004 * 109.47590 * 300.00192 * 5 3 2 33 33 H 0.96998 * 120.00289 * 185.19379 * 10 9 7 34 34 H 1.09006 * 109.54939 * 301.21860 * 19 17 15 35 35 H 1.09003 * 109.55466 * 61.41907 * 19 17 15 36 36 H 1.09000 * 109.89393 * 46.80871 * 20 19 17 37 37 H 1.09000 * 109.89632 * 167.92465 * 20 19 17 38 38 H 1.08002 * 119.69326 * 359.25950 * 23 22 21 39 39 H 1.08001 * 120.24284 * 180.02562 * 24 23 22 40 40 H 1.08002 * 119.99826 * 180.25749 * 25 24 23 41 41 H 1.08002 * 119.46448 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.1754 3.3379 -1.1868 8 1 3.8611 2.8827 -2.1144 9 6 4.7764 4.5908 -1.1965 10 7 5.4833 4.9885 -0.1626 11 14 4.5793 5.7097 -2.6793 12 1 3.3768 6.5624 -2.4997 13 1 5.7816 6.5711 -2.8126 14 1 4.4229 4.8851 -3.9044 15 6 4.1732 3.3254 1.1676 16 8 3.4961 4.2930 1.4438 17 6 5.2286 2.8448 2.1300 18 1 5.4405 1.7973 1.9160 19 6 6.4950 3.6524 1.9052 20 6 7.5873 3.1477 2.8588 21 16 7.1481 3.7093 4.5286 22 6 5.4339 3.3040 4.6347 23 6 4.8313 3.3546 5.8931 24 6 3.4931 3.0642 6.0425 25 6 2.7427 2.7191 4.9328 26 6 3.3356 2.6624 3.6906 27 6 4.6889 2.9500 3.5260 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 3.9557 0.7811 -0.8909 32 1 3.9564 0.7807 0.8891 33 1 5.8397 5.8902 -0.1367 34 1 6.8265 3.5314 0.8739 35 1 6.2959 4.7057 2.1033 36 1 7.6275 2.0587 2.8336 37 1 8.5530 3.5622 2.5692 38 1 5.4199 3.6235 6.7578 39 1 3.0332 3.1056 7.0188 40 1 1.6919 2.4939 5.0403 41 1 2.7415 2.3916 2.8302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358564987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:15 Heat of formation + Delta-G solvation = -78.451037 kcal Electronic energy + Delta-G solvation = -27943.299512 eV Core-core repulsion = 24108.070911 eV Total energy + Delta-G solvation = -3835.228601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.68977 -40.98038 -39.48952 -37.46207 -36.27718 -36.04505 -33.86105 -32.00595 -31.61784 -30.03218 -28.79074 -27.79657 -26.09194 -24.01868 -23.62640 -22.83751 -22.04320 -20.60497 -18.99836 -18.74894 -18.46274 -17.86445 -17.39677 -17.05951 -16.76623 -16.64092 -16.46310 -15.92775 -15.64989 -15.60470 -14.80004 -14.52318 -14.44444 -14.38383 -14.11675 -13.73846 -13.64378 -13.48302 -13.32527 -13.10270 -13.00510 -12.88968 -12.80291 -12.50653 -12.30777 -12.15501 -12.02683 -11.74342 -11.71453 -11.50366 -11.05248 -10.99254 -10.66554 -10.32354 -9.72050 -9.39582 -8.33346 -8.18527 -5.64927 0.24936 0.37471 0.71081 1.29146 1.35818 1.45293 1.46694 1.49029 1.61977 1.98337 2.41893 2.68865 3.05266 3.21575 3.66181 3.81552 3.91680 4.03729 4.09549 4.13652 4.14971 4.30256 4.32587 4.34467 4.37005 4.46707 4.51164 4.59393 4.60162 4.69210 4.80823 4.90048 5.02394 5.19461 5.32553 5.40561 5.42704 5.45986 5.56332 5.70241 5.95725 6.03397 6.86697 6.95267 7.30816 7.56836 7.93854 8.85793 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.006205 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.738935 B = 4511.403749 C = 6579.000295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.426 3.574 4 O -0.532 6.532 5 C 0.138 3.862 6 N -0.552 5.552 7 C -0.301 4.301 8 H 0.088 0.912 9 C -0.017 4.017 10 N -0.889 5.889 11 Si 0.963 3.037 12 H -0.307 1.307 13 H -0.282 1.282 14 H -0.259 1.259 15 C 0.596 3.404 16 O -0.548 6.548 17 C -0.067 4.067 18 H 0.101 0.899 19 C -0.064 4.064 20 C -0.095 4.095 21 S -0.137 6.137 22 C -0.086 4.086 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.079 4.079 28 H 0.139 0.861 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -12.041 8.405 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.267 3.733 4 O -0.420 6.420 5 C 0.011 3.989 6 N -0.280 5.280 7 C -0.428 4.428 8 H 0.106 0.894 9 C -0.216 4.216 10 N -0.531 5.531 11 Si 0.791 3.209 12 H -0.235 1.235 13 H -0.208 1.208 14 H -0.183 1.183 15 C 0.388 3.612 16 O -0.422 6.422 17 C -0.089 4.089 18 H 0.119 0.881 19 C -0.103 4.103 20 C -0.243 4.243 21 S 0.105 5.895 22 C -0.198 4.198 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.147 4.147 26 C -0.132 4.132 27 C -0.085 4.085 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.182 0.818 40 H 0.158 0.842 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.385 -10.546 9.315 14.139 hybrid contribution -1.655 0.728 -2.149 2.809 sum -0.270 -9.818 7.166 12.158 Atomic orbital electron populations 1.23461 0.75842 1.05510 1.01683 1.86516 1.24285 1.32776 1.84171 1.25962 0.94517 0.81200 0.71636 1.90701 1.67722 1.38019 1.45544 1.20828 0.85434 0.85260 1.07424 1.42715 1.71476 1.09186 1.04663 1.19453 1.35359 1.02753 0.85249 0.89385 1.25520 0.95902 0.99550 1.00668 1.69588 1.33056 1.17836 1.32650 0.85359 0.76400 0.79146 0.80025 1.23547 1.20762 1.18309 1.19663 0.80422 0.80917 0.80179 1.90437 1.46243 1.30491 1.75025 1.20125 0.96653 1.01815 0.90310 0.88111 1.21189 0.90493 0.98233 1.00425 1.24010 1.02769 1.05090 0.92430 1.84951 1.03415 1.79266 1.21885 1.21494 0.97732 1.04592 0.95991 1.21185 0.96007 1.00901 0.95052 1.21352 0.93047 0.97943 0.99651 1.21270 1.00860 1.00513 0.92104 1.21169 0.93849 1.00369 0.97796 1.19454 0.94468 1.01222 0.93371 0.84260 0.93021 0.92961 0.84474 0.85798 0.92795 0.88881 0.93116 0.87469 0.85399 0.83429 0.81765 0.84214 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.88 16 2 O -0.36 -10.94 10.57 -51.42 -0.54 -11.49 16 3 C 0.43 16.40 8.02 71.23 0.57 16.98 16 4 O -0.53 -26.02 16.18 21.95 0.36 -25.66 16 5 C 0.14 4.94 6.08 85.63 0.52 5.46 16 6 N -0.55 -26.31 2.06 -639.61 -1.32 -27.63 16 7 C -0.30 -15.79 9.67 84.04 0.81 -14.98 16 8 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 9 C -0.02 -0.92 5.02 84.93 0.43 -0.49 16 10 N -0.89 -48.62 7.43 21.66 0.16 -48.46 16 11 Si 0.96 45.04 29.60 68.60 2.03 47.07 16 12 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.60 29.69 2.13 87.66 0.19 29.87 16 16 O -0.55 -33.05 15.41 -3.04 -0.05 -33.09 16 17 C -0.07 -2.71 2.26 -12.86 -0.03 -2.74 16 18 H 0.10 3.53 6.98 -2.39 -0.02 3.52 16 19 C -0.06 -2.55 3.70 30.40 0.11 -2.44 16 20 C -0.10 -2.79 6.53 72.16 0.47 -2.32 16 21 S -0.14 -4.23 21.99 -56.49 -1.24 -5.47 16 22 C -0.09 -2.95 6.05 22.59 0.14 -2.82 16 23 C -0.11 -3.11 9.65 22.49 0.22 -2.90 16 24 C -0.10 -2.62 10.06 22.18 0.22 -2.40 16 25 C -0.13 -3.93 10.03 22.18 0.22 -3.71 16 26 C -0.11 -4.31 8.35 22.42 0.19 -4.13 16 27 C -0.08 -3.07 5.27 -19.82 -0.10 -3.17 16 28 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.14 4.10 8.04 -2.38 -0.02 4.08 16 32 H 0.12 3.61 6.95 -2.39 -0.02 3.60 16 33 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 34 H 0.09 4.04 6.88 -2.38 -0.02 4.02 16 35 H 0.05 2.39 7.49 -2.39 -0.02 2.38 16 36 H 0.11 2.69 8.08 -2.39 -0.02 2.68 16 37 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.15 3.43 8.05 -2.91 -0.02 3.40 16 39 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.09 3.78 6.75 -2.91 -0.02 3.76 16 Total: -1.00 -76.00 352.05 5.60 -70.40 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.05 Total: 22.22 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.15 Total: 12.11 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.16 Total: -76.09 kcal Atomic # 8 Polarization: -70.01 SS G_CDS: -0.23 Total: -70.24 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -1.24 Total: -5.47 kcal Total: -76.00 5.60 -70.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358564987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.050 kcal (2) G-P(sol) polarization free energy of solvation -76.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds