Wall clock time and date at job start Tue Mar 31 2020 18:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47179 * 239.99599 * 3 2 1 5 5 H 1.48501 * 109.47506 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47516 * 119.99610 * 3 2 1 7 7 C 1.39909 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00511 * 175.55589 * 7 2 1 9 9 C 1.41155 * 119.99562 * 355.56103 * 7 2 1 10 10 C 1.40869 * 120.16219 * 214.77975 * 9 7 2 11 11 C 1.36373 * 119.82670 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17119 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83275 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99895 * 35.26838 * 13 12 11 15 15 O 1.21280 * 120.00008 * 355.98037 * 14 13 12 16 16 C 1.50694 * 119.99665 * 175.97787 * 14 13 12 17 17 O 1.45210 * 109.46977 * 179.97438 * 16 14 13 18 18 C 1.34228 * 116.99785 * 179.97438 * 17 16 14 19 19 O 1.20824 * 120.00341 * 0.02562 * 18 17 16 20 20 C 1.50702 * 119.99711 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.75826 * 32.04520 * 20 18 17 22 22 C 1.55134 * 110.85583 * 155.77044 * 20 18 17 23 23 C 1.53853 * 106.90031 * 160.29629 * 22 20 18 24 24 C 1.54280 * 108.92448 * 312.74094 * 23 22 20 25 25 S 1.83099 * 104.64888 * 27.95280 * 24 23 22 26 26 C 1.39479 * 120.33153 * 0.27461 * 12 11 10 27 27 C 1.36370 * 120.16898 * 359.48197 * 26 12 11 28 28 H 0.96996 * 120.00542 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08451 * 0.05236 * 10 9 7 30 30 H 1.08003 * 119.91386 * 180.02562 * 11 10 9 31 31 H 0.96995 * 119.99841 * 215.54839 * 13 12 11 32 32 H 1.08997 * 109.47354 * 300.00395 * 16 14 13 33 33 H 1.08999 * 109.47198 * 60.00719 * 16 14 13 34 34 H 1.09005 * 109.97313 * 279.65499 * 22 20 18 35 35 H 1.08997 * 109.97750 * 40.93445 * 22 20 18 36 36 H 1.09001 * 109.60981 * 192.82509 * 23 22 20 37 37 H 1.09001 * 109.61473 * 72.65883 * 23 22 20 38 38 H 1.09003 * 110.40176 * 269.16300 * 24 23 22 39 39 H 1.09000 * 110.40196 * 146.74404 * 24 23 22 40 40 H 1.08004 * 119.91295 * 179.71869 * 26 12 11 41 41 H 1.08000 * 120.08700 * 180.27050 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2131 -0.0719 9 6 1.3057 -2.4322 0.0957 10 6 1.8650 -3.5180 0.7976 11 6 1.1804 -4.6942 0.8848 12 6 -0.0706 -4.8236 0.2817 13 7 -0.7631 -6.0280 0.3747 14 6 -0.6802 -6.7680 1.4981 15 8 0.0543 -6.4223 2.3992 16 6 -1.5001 -8.0250 1.6345 17 8 -1.2357 -8.6378 2.9241 18 6 -1.8924 -9.7743 3.2048 19 8 -2.6622 -10.2420 2.3995 20 6 -1.6694 -10.4671 4.5245 21 1 -1.4533 -9.7425 5.3096 22 6 -2.8906 -11.3471 4.8996 23 6 -2.4028 -12.3682 5.9419 24 6 -1.0831 -12.9961 5.4477 25 16 -0.3239 -11.7072 4.3919 26 6 -0.6285 -3.7546 -0.4193 27 6 0.0419 -2.5706 -0.5109 28 1 -0.4851 0.8400 -0.0004 29 1 2.8332 -3.4190 1.2658 30 1 1.6077 -5.5274 1.4229 31 1 -1.3020 -6.3363 -0.3705 32 1 -2.5591 -7.7780 1.5594 33 1 -1.2323 -8.7215 0.8400 34 1 -3.6792 -10.7273 5.3263 35 1 -3.2615 -11.8658 4.0155 36 1 -3.1537 -13.1480 6.0694 37 1 -2.2348 -11.8665 6.8949 38 1 -1.2847 -13.8947 4.8646 39 1 -0.4330 -13.2276 6.2915 40 1 -1.5956 -3.8637 -0.8875 41 1 -0.3933 -1.7424 -1.0504 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748478564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:16 Heat of formation + Delta-G solvation = -96.807270 kcal Electronic energy + Delta-G solvation = -24867.779263 eV Core-core repulsion = 21031.754676 eV Total energy + Delta-G solvation = -3836.024587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.89454 -39.60744 -37.49682 -36.84683 -36.05240 -34.48900 -33.00134 -31.05280 -29.78327 -29.47498 -28.15526 -26.01298 -24.74221 -22.43881 -21.66967 -20.93896 -20.77657 -19.81875 -18.38077 -17.75255 -17.40872 -17.31491 -16.58890 -16.30055 -16.09903 -15.25472 -15.16818 -14.82208 -14.71704 -14.10108 -13.95999 -13.56098 -13.33895 -12.91007 -12.84306 -12.69888 -12.61709 -12.21908 -12.14783 -12.02977 -11.74234 -11.42504 -11.39940 -11.17533 -11.08333 -10.96282 -10.92885 -10.75108 -10.46053 -10.07114 -9.52696 -9.49585 -9.18179 -8.92991 -8.17314 -7.57906 -6.91436 -6.64188 -4.36982 0.78056 1.72926 2.03908 2.27233 2.46697 2.96616 3.06732 3.08600 3.11120 3.26990 3.56596 3.83571 3.96560 4.18087 4.24598 4.48772 4.55390 4.62080 4.66878 4.81030 4.95336 4.97075 5.05447 5.09585 5.22499 5.29490 5.54707 5.62367 6.02578 6.16129 6.40969 6.68275 6.86543 7.03444 7.15791 7.25682 7.36196 7.60798 7.68360 7.81876 8.03102 8.17999 8.28480 8.56091 8.64958 8.90170 8.96216 10.26799 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.032038 B = 0.001857 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.752317 B =15074.924681 C =15387.789284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.645 5.645 14 C 0.499 3.501 15 O -0.507 6.507 16 C 0.052 3.948 17 O -0.321 6.321 18 C 0.485 3.515 19 O -0.494 6.494 20 C -0.051 4.051 21 H 0.134 0.866 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.082 4.082 25 S -0.228 6.228 26 C -0.117 4.117 27 C -0.142 4.142 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.398 0.602 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 -21.119 7.682 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.092 4.092 13 N -0.289 5.289 14 C 0.283 3.717 15 O -0.382 6.382 16 C -0.026 4.026 17 O -0.236 6.236 18 C 0.325 3.675 19 O -0.382 6.382 20 C -0.180 4.180 21 H 0.152 0.848 22 C -0.157 4.157 23 C -0.166 4.166 24 C -0.230 4.230 25 S -0.002 6.002 26 C -0.138 4.138 27 C -0.162 4.162 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.721 -20.815 7.523 23.131 hybrid contribution -1.138 0.622 0.196 1.311 sum -7.859 -20.193 7.719 23.003 Atomic orbital electron populations 1.69746 1.07299 1.28887 1.37866 1.25893 0.94964 1.01222 0.92521 0.86229 0.79788 0.80018 0.79800 1.19032 1.20427 1.19065 1.19483 0.94762 0.90205 1.44585 0.90563 1.17745 0.92279 0.92013 0.88115 1.20812 1.01303 0.94893 1.05528 1.20410 0.92710 0.97923 0.99338 1.17218 0.94231 0.85528 1.12206 1.42771 1.49246 1.21341 1.15586 1.19893 0.83925 0.84714 0.83155 1.90746 1.37953 1.69980 1.39495 1.22794 1.01286 0.94469 0.84029 1.86561 1.62951 1.37003 1.37078 1.22664 0.77618 0.78932 0.88318 1.90668 1.34595 1.64625 1.48328 1.23726 0.98587 0.99378 0.96349 0.84834 1.22651 0.95687 0.96433 1.00912 1.22300 0.96116 0.98720 0.99419 1.24157 0.98675 0.98956 1.01218 1.88069 1.27854 1.15923 1.68338 1.20305 0.98366 0.93027 1.02069 1.21195 0.97308 0.95537 1.02161 0.91036 0.88473 0.87428 0.76842 0.88046 0.88171 0.88760 0.88411 0.89021 0.90023 0.88415 0.87872 0.88961 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.97 10.59 55.55 0.59 -20.38 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.94 29.56 -169.99 -5.03 13.91 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.20 9.74 -39.26 -0.38 -5.58 16 11 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 12 C 0.00 0.00 6.30 -83.57 -0.53 -0.53 16 13 N -0.64 -11.03 5.30 -9.74 -0.05 -11.08 16 14 C 0.50 8.71 7.74 -10.99 -0.09 8.62 16 15 O -0.51 -11.19 13.93 -14.10 -0.20 -11.38 16 16 C 0.05 0.68 5.95 36.00 0.21 0.89 16 17 O -0.32 -4.67 9.76 -45.90 -0.45 -5.12 16 18 C 0.49 6.05 7.23 36.01 0.26 6.31 16 19 O -0.49 -6.71 15.62 -18.75 -0.29 -7.00 16 20 C -0.05 -0.48 3.74 -26.75 -0.10 -0.58 16 21 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 22 C -0.12 -0.78 5.72 -25.16 -0.14 -0.93 16 23 C -0.13 -0.57 6.39 -25.62 -0.16 -0.73 16 24 C -0.08 -0.47 7.34 37.83 0.28 -0.19 16 25 S -0.23 -2.30 22.71 -107.50 -2.44 -4.74 16 26 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 27 C -0.14 -3.62 8.62 -39.26 -0.34 -3.95 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 30 H 0.11 2.56 6.23 -52.48 -0.33 2.23 16 31 H 0.40 5.11 8.82 -40.82 -0.36 4.75 16 32 H 0.10 1.11 8.13 -51.93 -0.42 0.68 16 33 H 0.10 1.11 8.13 -51.93 -0.42 0.68 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.76 7.33 -51.93 -0.38 0.38 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 41 H 0.13 3.48 6.13 -52.49 -0.32 3.15 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -32.59 361.94 -10.33 -42.92 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.16 Total: 8.27 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.75 Total: -10.86 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.54 Total: -31.45 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.94 Total: -23.50 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.44 Total: -4.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.59 -10.33 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748478564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.888 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds