Wall clock time and date at job start Tue Mar 31 2020 19:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00394 * 2 1 4 4 H 1.48498 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46791 * 300.00347 * 3 2 1 6 6 H 1.48492 * 109.47015 * 60.00148 * 3 2 1 7 7 C 1.38735 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99724 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00245 * 359.97438 * 7 2 1 10 10 C 1.76200 * 100.00007 * 175.69281 * 9 7 2 11 11 C 1.39226 * 120.01612 * 275.62840 * 10 9 7 12 12 C 1.38135 * 120.19746 * 180.02562 * 11 10 9 13 13 C 1.38081 * 120.24916 * 0.02562 * 12 11 10 14 14 C 1.39640 * 120.03418 * 359.97438 * 13 12 11 15 15 C 1.47860 * 120.09679 * 180.02562 * 14 13 12 16 16 O 1.21555 * 120.00322 * 39.62473 * 15 14 13 17 17 N 1.34775 * 119.99643 * 219.89451 * 15 14 13 18 18 C 1.46920 * 120.63259 * 5.76732 * 17 15 14 19 19 C 1.53628 * 108.54500 * 126.36773 * 18 17 15 20 20 C 1.53041 * 109.24010 * 54.85955 * 19 18 17 21 21 C 1.53039 * 109.53651 * 298.50997 * 20 19 18 22 22 H 1.08998 * 109.52875 * 301.39965 * 21 20 19 23 23 C 1.50702 * 109.49781 * 181.31521 * 21 20 19 24 24 O 1.20818 * 119.99880 * 0.16634 * 23 21 20 25 25 O 1.34234 * 119.99751 * 180.15871 * 23 21 20 26 26 C 1.46933 * 120.63102 * 186.04827 * 17 15 14 27 27 C 1.38831 * 120.02449 * 95.90665 * 10 9 7 28 28 H 0.96998 * 119.99636 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.90214 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.87441 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.98561 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.58995 * 246.20358 * 18 17 15 33 33 H 1.09003 * 109.58679 * 6.62830 * 18 17 15 34 34 H 1.08995 * 109.63172 * 294.86537 * 19 18 17 35 35 H 1.09001 * 109.42941 * 174.72131 * 19 18 17 36 36 H 1.08994 * 109.45893 * 178.49366 * 20 19 18 37 37 H 1.08999 * 109.44947 * 58.52265 * 20 19 18 38 38 H 0.96705 * 116.99404 * 179.97438 * 25 23 21 39 39 H 1.09002 * 109.58441 * 353.37357 * 26 17 15 40 40 H 1.08998 * 109.58295 * 113.65439 * 26 17 15 41 41 H 1.08004 * 120.12292 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0099 -1.2015 -0.0005 8 1 3.0899 -1.2016 -0.0010 9 16 1.1288 -2.7274 -0.0005 10 6 2.4743 -3.8576 -0.1316 11 6 3.0035 -4.1684 -1.3813 12 6 4.0579 -5.0543 -1.4885 13 6 4.5938 -5.6379 -0.3576 14 6 4.0707 -5.3334 0.9008 15 6 4.6438 -5.9571 2.1127 16 8 5.8463 -6.1069 2.2086 17 7 3.8324 -6.3646 3.1088 18 6 2.3724 -6.3121 2.9538 19 6 1.7983 -7.7040 3.2593 20 6 2.2671 -8.1496 4.6463 21 6 3.7945 -8.2444 4.6643 22 1 4.1247 -8.9515 3.9033 23 6 4.2533 -8.7143 6.0206 24 8 3.4421 -8.9524 6.8837 25 8 5.5633 -8.8685 6.2697 26 6 4.3912 -6.8639 4.3727 27 6 3.0035 -4.4431 1.0105 28 1 -0.4849 0.8401 -0.0004 29 1 2.5879 -3.7161 -2.2696 30 1 4.4647 -5.2913 -2.4604 31 1 5.4178 -6.3303 -0.4463 32 1 1.9571 -5.5821 3.6486 33 1 2.1234 -6.0291 1.9311 34 1 2.1468 -8.4161 2.5112 35 1 0.7094 -7.6592 3.2403 36 1 1.8401 -9.1254 4.8777 37 1 1.9395 -7.4239 5.3906 38 1 5.8092 -9.1717 7.1544 39 1 5.4748 -6.9450 4.2864 40 1 4.1394 -6.1766 5.1803 41 1 2.5923 -4.2070 1.9809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:48 Heat of formation + Delta-G solvation = -104.550792 kcal Electronic energy + Delta-G solvation = -26014.234221 eV Core-core repulsion = 22177.873850 eV Total energy + Delta-G solvation = -3836.360371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07321 -40.18324 -38.18748 -37.28535 -36.42808 -33.42918 -32.56837 -31.90273 -30.65463 -30.55227 -25.98886 -25.63012 -25.28892 -23.09168 -22.46582 -22.16667 -20.58059 -19.55309 -18.40624 -17.94310 -17.41676 -16.71974 -16.47279 -16.40627 -15.65406 -15.22478 -14.90912 -14.87127 -14.59530 -14.43341 -14.08384 -13.72012 -13.61004 -13.44047 -13.13860 -13.00522 -12.70918 -12.36059 -12.00595 -11.80339 -11.62794 -11.39638 -11.28830 -11.17916 -11.15177 -11.09668 -10.97342 -10.87247 -10.73577 -10.00533 -9.84155 -9.22582 -9.05206 -8.86906 -8.57032 -8.07722 -6.79312 -6.35249 -4.09608 1.22015 1.58928 1.79924 2.54738 2.82946 2.95167 3.14160 3.15772 3.24439 3.39704 3.98493 4.16705 4.18421 4.39646 4.53419 4.61788 4.70637 4.89288 5.01568 5.07009 5.15014 5.21547 5.28511 5.32889 5.39975 5.45520 5.55997 5.59406 5.66182 5.70457 5.77232 5.78694 5.97421 5.99690 6.12507 6.14999 6.33430 6.52310 6.65429 6.84355 7.13487 7.24996 7.52353 7.53119 8.10682 8.27279 9.11380 10.71361 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002908 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.620746 B = 9625.759000 C =10122.444351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.520 4.520 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.105 4.105 11 C -0.057 4.057 12 C -0.138 4.138 13 C -0.067 4.067 14 C -0.150 4.150 15 C 0.572 3.428 16 O -0.538 6.538 17 N -0.609 5.609 18 C 0.090 3.910 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.095 4.095 22 H 0.114 0.886 23 C 0.488 3.512 24 O -0.512 6.512 25 O -0.513 6.513 26 C 0.124 3.876 27 C -0.053 4.053 28 H 0.269 0.731 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -16.981 6.728 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.667 4.667 8 H 0.095 0.905 9 S 0.199 5.801 10 C -0.216 4.216 11 C -0.078 4.078 12 C -0.158 4.158 13 C -0.086 4.086 14 C -0.154 4.154 15 C 0.362 3.638 16 O -0.416 6.416 17 N -0.342 5.342 18 C -0.033 4.033 19 C -0.171 4.171 20 C -0.143 4.143 21 C -0.115 4.115 22 H 0.132 0.868 23 C 0.329 3.671 24 O -0.399 6.399 25 O -0.324 6.324 26 C 0.000 4.000 27 C -0.074 4.074 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.782 -17.017 6.700 18.904 hybrid contribution 1.987 1.003 0.545 2.292 sum 6.770 -16.015 7.245 18.836 Atomic orbital electron populations 1.69990 1.05881 1.27615 1.47061 1.24996 0.95118 0.99112 0.94298 0.86081 0.79804 0.81541 0.78001 1.19452 1.20444 1.20447 1.22883 0.94934 0.90124 1.58807 0.90543 1.83568 1.03974 0.97172 1.95393 1.22782 1.03120 1.01693 0.93975 1.21991 0.93903 0.94071 0.97803 1.21119 0.97813 0.98693 0.98157 1.21065 0.98001 0.98559 0.91013 1.19747 0.99804 1.02743 0.93131 1.18509 0.85914 0.76910 0.82444 1.90749 1.14639 1.56120 1.80076 1.47917 1.07186 1.64255 1.14852 1.22385 0.78705 0.97448 1.04721 1.22028 1.01695 0.96952 0.96446 1.21480 0.91244 1.03395 0.98195 1.21469 0.98309 0.99801 0.91882 0.86792 1.23310 0.79913 0.73550 0.90309 1.90730 1.54741 1.47077 1.47373 1.84580 1.27139 1.79926 1.40800 1.21415 1.00657 0.91711 0.86168 1.21955 0.92460 0.93890 0.99137 0.92084 0.85097 0.85751 0.85830 0.90327 0.87528 0.91080 0.89399 0.90527 0.90438 0.73067 0.87525 0.90751 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 13.22 55.49 0.73 -23.77 16 2 C 0.07 1.99 5.49 -17.45 -0.10 1.90 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.06 9.46 30.92 0.29 -13.77 16 8 H 0.08 2.08 7.79 -52.48 -0.41 1.67 16 9 S -0.04 -0.85 21.41 -107.50 -2.30 -3.15 16 10 C -0.11 -2.06 5.45 -38.99 -0.21 -2.28 16 11 C -0.06 -0.99 9.79 -39.25 -0.38 -1.38 16 12 C -0.14 -2.04 10.02 -39.68 -0.40 -2.43 16 13 C -0.07 -1.01 9.63 -39.12 -0.38 -1.39 16 14 C -0.15 -2.39 5.14 -105.00 -0.54 -2.93 16 15 C 0.57 8.86 7.33 -12.32 -0.09 8.77 16 16 O -0.54 -9.72 16.34 5.32 0.09 -9.63 16 17 N -0.61 -7.49 2.97 -173.60 -0.51 -8.01 16 18 C 0.09 0.95 4.90 -3.49 -0.02 0.94 16 19 C -0.13 -1.11 6.10 -26.38 -0.16 -1.27 16 20 C -0.11 -0.89 4.46 -26.69 -0.12 -1.01 16 21 C -0.09 -0.84 2.78 -91.65 -0.25 -1.10 16 22 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 23 C 0.49 4.55 7.63 36.01 0.27 4.82 16 24 O -0.51 -6.09 16.74 -18.74 -0.31 -6.40 16 25 O -0.51 -3.79 13.35 -39.27 -0.52 -4.32 16 26 C 0.12 1.31 5.65 -3.71 -0.02 1.29 16 27 C -0.05 -0.92 7.12 -38.92 -0.28 -1.20 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.67 8.05 -52.49 -0.42 1.25 16 32 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.11 1.27 4.71 -51.93 -0.24 1.03 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.41 1.28 9.10 45.56 0.41 1.69 16 39 H 0.11 1.26 7.00 -51.93 -0.36 0.89 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.13 2.23 6.51 -52.48 -0.34 1.89 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -33.17 360.31 -9.11 -42.28 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.30 Total: 2.79 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.38 Total: -11.04 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.22 Total: -31.77 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.75 Total: -20.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.30 Total: -3.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.17 -9.11 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.275 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds