Wall clock time and date at job start Tue Mar 31 2020 18:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75341 * 124.37399 * 2 1 4 4 C 1.75877 * 92.15698 * 180.26590 * 3 2 1 5 5 N 1.35028 * 130.82427 * 180.02562 * 4 3 2 6 6 C 1.29983 * 121.70427 * 180.02562 * 5 4 3 7 7 N 1.35786 * 121.86926 * 359.97438 * 6 5 4 8 8 C 1.46507 * 119.81586 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47078 * 89.99489 * 8 7 6 10 10 O 1.21286 * 120.00351 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99611 * 0.02562 * 11 9 8 13 13 C 1.46496 * 120.00373 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.46987 * 90.00193 * 13 11 9 15 15 H 1.07996 * 119.99761 * 0.02562 * 14 13 11 16 16 C 1.37872 * 119.99970 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00111 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46918 * 90.00346 * 18 16 14 20 20 H 1.48495 * 109.47385 * 210.00312 * 18 16 14 21 21 H 1.48500 * 109.47036 * 330.00246 * 18 16 14 22 22 C 1.34748 * 120.36989 * 0.02562 * 7 6 5 23 23 O 1.21894 * 120.64443 * 180.02562 * 22 7 6 24 24 C 1.39189 * 109.62166 * 0.02562 * 4 3 2 25 25 C 1.32034 * 124.37099 * 180.30237 * 2 1 3 26 26 C 1.50699 * 122.59945 * 359.75317 * 25 2 1 27 27 H 1.08998 * 109.47060 * 269.69762 * 1 2 3 28 28 H 1.09000 * 109.46767 * 29.70359 * 1 2 3 29 29 H 1.09002 * 109.47165 * 149.69659 * 1 2 3 30 30 H 1.08000 * 119.06175 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47102 * 210.00105 * 8 7 6 32 32 H 1.09003 * 109.46481 * 329.99960 * 8 7 6 33 33 H 1.08994 * 109.46945 * 89.99585 * 12 11 9 34 34 H 1.08999 * 109.46749 * 209.99576 * 12 11 9 35 35 H 1.08998 * 109.46832 * 329.98975 * 12 11 9 36 36 H 1.09000 * 109.47339 * 210.00824 * 13 11 9 37 37 H 1.09006 * 109.46729 * 330.00999 * 13 11 9 38 38 H 0.97001 * 120.00146 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47185 * 89.97663 * 26 25 2 40 40 H 1.08997 * 109.47285 * 209.97608 * 26 25 2 41 41 H 1.09009 * 109.46991 * 329.97935 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4472 0.0000 4 6 3.9850 0.5096 -0.0082 5 7 5.2765 0.9034 -0.0116 6 6 6.2525 0.0449 -0.0182 7 7 6.0291 -1.2944 -0.0214 8 6 7.1631 -2.2221 -0.0283 9 6 7.5570 -2.5443 1.3901 10 8 6.9501 -2.0484 2.3157 11 7 8.5833 -3.3844 1.6302 12 6 9.3161 -3.9839 0.5121 13 6 8.9659 -3.6982 3.0091 14 6 8.1972 -4.9052 3.4815 15 1 7.4942 -5.3903 2.8205 16 6 8.3921 -5.3908 4.7570 17 7 9.2484 -4.8003 5.5617 18 14 7.4397 -6.8874 5.3423 19 1 8.2073 -8.1181 5.0241 20 1 7.2321 -6.7992 6.8101 21 1 6.1226 -6.9347 4.6581 22 6 4.7703 -1.7752 -0.0184 23 8 4.5640 -2.9765 -0.0208 24 6 3.6814 -0.8488 -0.0111 25 6 2.2524 -1.0898 -0.0058 26 6 1.6629 -2.4767 -0.0076 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3633 0.8926 -0.5092 29 1 -0.3633 -0.8873 -0.5185 30 1 7.2699 0.4072 -0.0203 31 1 6.8790 -3.1394 -0.5439 32 1 8.0059 -1.7616 -0.5438 33 1 10.1486 -3.3373 0.2351 34 1 9.6978 -4.9605 0.8099 35 1 8.6468 -4.1000 -0.3403 36 1 10.0346 -3.9088 3.0506 37 1 8.7379 -2.8478 3.6518 38 1 9.3853 -5.1418 6.4593 39 1 1.5167 -2.8080 -1.0357 40 1 2.3418 -3.1608 0.5015 41 1 0.7036 -2.4644 0.5100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:57 Heat of formation + Delta-G solvation = -34.327147 kcal Electronic energy + Delta-G solvation = -26487.914269 eV Core-core repulsion = 22686.891774 eV Total energy + Delta-G solvation = -3801.022494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92636 -40.61382 -38.82262 -38.58308 -36.71254 -35.66387 -34.77182 -32.32249 -30.88410 -30.29895 -29.06767 -27.42677 -27.25931 -25.77725 -24.56394 -24.21747 -20.86806 -20.35589 -19.63370 -18.96101 -18.74484 -18.43136 -18.07537 -17.41140 -16.89041 -16.73322 -16.43837 -15.91675 -15.71315 -15.19079 -15.17903 -14.56673 -14.49254 -14.42662 -14.30613 -13.86874 -13.82283 -13.67726 -13.50766 -13.33302 -13.28374 -13.16076 -12.90058 -12.85555 -12.70463 -12.57681 -12.27641 -11.93620 -11.76733 -11.38577 -11.29326 -11.14349 -10.68842 -10.57596 -9.59097 -9.50514 -9.00863 -8.28522 -6.42403 -0.84427 0.05390 0.47641 0.75749 1.00683 1.20556 1.30333 1.33635 1.43716 1.63059 2.18409 2.33087 2.50668 3.01293 3.06836 3.29700 3.52151 3.64460 3.75768 3.84574 4.01425 4.11875 4.27048 4.34201 4.43607 4.65174 4.68994 4.74975 4.75343 4.81690 4.94172 4.99721 5.04121 5.08085 5.13780 5.18234 5.33972 5.48708 5.49547 5.76326 6.00740 6.46756 6.55905 6.63287 6.69223 7.19856 7.34278 8.78215 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.003270 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.900264 B = 8560.695044 C = 9502.288006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 S 0.226 5.774 4 C 0.062 3.938 5 N -0.521 5.521 6 C 0.400 3.600 7 N -0.517 5.517 8 C 0.086 3.914 9 C 0.482 3.518 10 O -0.594 6.594 11 N -0.601 5.601 12 C 0.070 3.930 13 C 0.261 3.739 14 C -0.547 4.547 15 H 0.045 0.955 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.258 1.258 20 H -0.278 1.278 21 H -0.282 1.282 22 C 0.547 3.453 23 O -0.556 6.556 24 C -0.259 4.259 25 C -0.068 4.068 26 C -0.093 4.093 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.261 0.739 31 H 0.133 0.867 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.033 0.967 37 H -0.001 1.001 38 H 0.268 0.732 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 12.002 -19.170 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.314 4.314 3 S 0.491 5.509 4 C -0.171 4.171 5 N -0.243 5.243 6 C 0.112 3.888 7 N -0.235 5.235 8 C -0.039 4.039 9 C 0.269 3.731 10 O -0.475 6.475 11 N -0.332 5.332 12 C -0.072 4.072 13 C 0.140 3.860 14 C -0.585 4.585 15 H 0.063 0.937 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.785 3.215 19 H -0.183 1.183 20 H -0.203 1.203 21 H -0.207 1.207 22 C 0.344 3.656 23 O -0.435 6.435 24 C -0.277 4.277 25 C -0.078 4.078 26 C -0.151 4.151 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.276 0.724 31 H 0.151 0.849 32 H 0.209 0.791 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.493 13.876 -18.520 25.409 hybrid contribution 0.174 -3.273 1.121 3.464 sum -10.319 10.602 -17.399 22.839 Atomic orbital electron populations 1.20516 0.84198 1.04903 1.04150 1.24237 1.02060 0.94460 1.10641 1.83638 0.88851 1.05231 1.73153 1.24292 0.98097 0.94724 0.99960 1.67962 0.97083 1.34390 1.24834 1.25960 1.01629 0.77081 0.84103 1.46276 1.08110 1.09160 1.59955 1.22151 0.90104 0.97439 0.94210 1.21352 0.80126 0.79591 0.92035 1.90708 1.53911 1.55059 1.47836 1.48133 1.32079 1.43955 1.09080 1.22111 0.97552 0.99555 0.87935 1.18766 0.94956 0.94168 0.78124 1.21697 1.24140 1.13444 0.99253 0.93680 1.25767 0.96191 1.00358 0.96486 1.70019 1.36180 1.41957 1.08197 0.85519 0.78684 0.79763 0.77495 1.18263 1.20300 1.20745 1.17011 0.82946 0.88532 0.77151 1.90858 1.84284 1.16489 1.51897 1.20821 0.95525 0.93043 1.18317 1.19324 0.88995 0.97962 1.01531 1.20555 1.00789 0.90761 1.03027 0.89487 0.89062 0.88984 0.72376 0.84922 0.79129 0.89116 0.91643 0.88764 0.94858 0.98289 0.92283 0.90054 0.93473 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.66 71.24 0.69 -0.35 16 2 C -0.20 -4.34 6.39 24.76 0.16 -4.18 16 3 S 0.23 4.94 23.20 -56.49 -1.31 3.63 16 4 C 0.06 1.81 7.70 84.43 0.65 2.46 16 5 N -0.52 -14.05 10.42 -193.77 -2.02 -16.07 16 6 C 0.40 9.20 11.48 180.17 2.07 11.27 16 7 N -0.52 -14.98 2.08 -657.15 -1.37 -16.35 16 8 C 0.09 2.13 4.39 85.63 0.38 2.50 16 9 C 0.48 19.01 7.74 87.65 0.68 19.69 16 10 O -0.59 -30.89 16.01 -3.05 -0.05 -30.94 16 11 N -0.60 -23.99 2.86 -851.11 -2.43 -26.42 16 12 C 0.07 1.78 10.24 127.77 1.31 3.09 16 13 C 0.26 13.86 5.16 85.63 0.44 14.30 16 14 C -0.55 -32.26 9.39 25.60 0.24 -32.02 16 15 H 0.04 2.71 7.81 -2.91 -0.02 2.68 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.92 -56.20 13.29 21.45 0.28 -55.92 16 18 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 22 C 0.55 20.12 7.50 85.43 0.64 20.76 16 23 O -0.56 -23.86 14.78 -4.97 -0.07 -23.93 16 24 C -0.26 -8.69 6.06 -20.16 -0.12 -8.81 16 25 C -0.07 -1.94 5.96 -19.08 -0.11 -2.06 16 26 C -0.09 -2.46 9.16 71.24 0.65 -1.81 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.03 7.22 -2.39 -0.02 1.01 16 30 H 0.26 2.83 8.02 -2.91 -0.02 2.81 16 31 H 0.13 3.24 6.69 -2.39 -0.02 3.22 16 32 H 0.19 1.98 7.98 -2.39 -0.02 1.96 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 35 H 0.09 1.72 6.44 -2.39 -0.02 1.70 16 36 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 37 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.61 6.62 -2.39 -0.02 1.59 16 41 H 0.09 1.87 7.17 -2.38 -0.02 1.85 16 Total: -1.00 -92.04 362.18 4.26 -87.78 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.07 Total: 3.75 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 8.13 Total: 25.99 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -5.53 Total: -114.75 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.12 Total: -54.87 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.31 Total: 3.63 kcal Total: -92.04 4.26 -87.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.450 kcal (2) G-P(sol) polarization free energy of solvation -92.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds