Wall clock time and date at job start Tue Mar 31 2020 18:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00424 * 2 1 4 4 N 1.46502 * 109.47197 * 125.00050 * 3 2 1 5 5 C 1.34784 * 120.00295 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99681 * 359.97438 * 5 4 3 7 7 N 1.34766 * 120.00243 * 179.97438 * 5 4 3 8 8 C 1.40115 * 120.00264 * 184.61680 * 7 5 4 9 9 C 1.38858 * 119.99647 * 324.90875 * 8 7 5 10 10 C 1.38056 * 119.99755 * 180.27411 * 9 8 7 11 11 C 1.38859 * 119.99633 * 359.45096 * 10 9 8 12 12 N 1.40095 * 119.99822 * 180.28032 * 11 10 9 13 13 C 1.34778 * 120.00347 * 35.35165 * 12 11 10 14 14 O 1.21298 * 119.99880 * 355.37293 * 13 12 11 15 15 C 1.50695 * 120.00112 * 175.36937 * 13 12 11 16 16 S 1.81000 * 109.47035 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00178 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99810 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99794 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47346 * 89.99605 * 21 19 17 23 23 H 1.48500 * 109.47254 * 209.99752 * 21 19 17 24 24 H 1.48506 * 109.47301 * 329.99525 * 21 19 17 25 25 C 1.38860 * 120.00143 * 0.56791 * 11 10 9 26 26 C 1.38045 * 120.00025 * 359.70890 * 25 11 10 27 27 H 1.07994 * 120.00444 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99399 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99888 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47129 * 5.00373 * 3 2 1 31 31 H 1.09001 * 109.47583 * 244.99997 * 3 2 1 32 32 H 0.97004 * 120.00203 * 359.97438 * 4 3 2 33 33 H 0.97004 * 120.00127 * 4.61723 * 7 5 4 34 34 H 1.08001 * 119.99954 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.99451 * 179.72342 * 10 9 8 36 36 H 0.96996 * 119.99898 * 215.35964 * 12 11 10 37 37 H 1.08997 * 109.47513 * 300.00112 * 15 13 12 38 38 H 1.08998 * 109.47387 * 60.00625 * 15 13 12 39 39 H 0.97005 * 120.00052 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.00271 * 179.68342 * 25 11 10 41 41 H 1.08000 * 120.00316 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7785 2.4089 1.3335 6 8 3.7145 3.3582 0.5765 7 7 4.6338 2.4337 2.3746 8 6 5.3790 3.5898 2.6418 9 6 5.8352 4.3791 1.5944 10 6 6.5743 5.5152 1.8574 11 6 6.8516 5.8746 3.1697 12 7 7.5966 7.0306 3.4368 13 6 7.4580 8.1179 2.6524 14 8 6.7526 8.0688 1.6669 15 6 8.1794 9.3945 2.9999 16 16 7.7934 10.6607 1.7655 17 6 8.7405 12.0046 2.3992 18 1 9.3223 11.8777 3.3002 19 6 8.7389 13.2263 1.7404 20 7 8.0303 13.3808 0.6421 21 14 9.7436 14.6508 2.4119 22 1 11.1065 14.6162 1.8231 23 1 9.0835 15.9328 2.0570 24 1 9.8396 14.5358 3.8893 25 6 6.3957 5.0850 4.2170 26 6 5.6616 3.9459 3.9538 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4026 -0.9314 32 1 3.0446 0.5746 1.7356 33 1 4.7337 1.6511 2.9391 34 1 5.6160 4.1017 0.5739 35 1 6.9329 6.1266 1.0426 36 1 8.2122 7.0485 4.1861 37 1 7.8585 9.7369 3.9837 38 1 9.2541 9.2132 3.0110 39 1 8.0288 14.2348 0.1819 40 1 6.6158 5.3618 5.2375 41 1 5.3073 3.3315 4.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032938717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:57 Heat of formation + Delta-G solvation = -6.301713 kcal Electronic energy + Delta-G solvation = -24292.278049 eV Core-core repulsion = 20492.470829 eV Total energy + Delta-G solvation = -3799.807220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88651 -39.97358 -38.25214 -36.33745 -35.21430 -33.86618 -32.95012 -32.43174 -30.92196 -29.96274 -27.95117 -26.20796 -25.46910 -23.16496 -22.69307 -21.19593 -20.57382 -20.33563 -18.73025 -17.97822 -17.81199 -17.35124 -16.40817 -16.31020 -15.76451 -15.24244 -15.20149 -14.80544 -14.67890 -14.39441 -14.12278 -13.90057 -13.71134 -13.35173 -13.29871 -13.11562 -12.77129 -12.67137 -12.50352 -12.07182 -11.66907 -11.58865 -11.06386 -11.02639 -10.79157 -10.72286 -10.31302 -10.10532 -9.83404 -9.67886 -9.42916 -9.37643 -9.06655 -8.84393 -8.25277 -7.66514 -6.51025 -6.21681 -3.92840 1.25096 1.44156 1.50857 2.44285 2.82491 2.94745 3.05641 3.22859 3.28001 3.31827 3.65678 3.83883 3.91538 4.19745 4.26509 4.56218 4.85190 4.95717 5.05556 5.09456 5.13591 5.26985 5.30537 5.38304 5.49690 5.50862 5.63818 5.83160 5.83943 5.93671 5.98856 6.07370 6.09546 6.15702 6.20178 6.43353 6.55237 6.64814 6.69573 7.14479 7.57446 7.59272 7.59954 8.23985 8.34904 8.48097 9.23526 10.85710 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.001789 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.817897 B =15649.261155 C =16583.249029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.164 3.836 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.566 6.566 7 N -0.684 5.684 8 C 0.135 3.865 9 C -0.097 4.097 10 C -0.103 4.103 11 C 0.142 3.858 12 N -0.681 5.681 13 C 0.530 3.470 14 O -0.495 6.495 15 C -0.153 4.153 16 S -0.056 6.056 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.132 4.132 26 C -0.128 4.128 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.397 0.603 33 H 0.404 0.596 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.409 0.591 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.269 0.731 40 H 0.128 0.872 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -30.283 7.095 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.040 3.960 4 N -0.398 5.398 5 C 0.400 3.600 6 O -0.442 6.442 7 N -0.332 5.332 8 C 0.041 3.959 9 C -0.118 4.118 10 C -0.124 4.124 11 C 0.047 3.953 12 N -0.328 5.328 13 C 0.317 3.683 14 O -0.367 6.367 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.153 4.153 26 C -0.149 4.149 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.231 0.769 33 H 0.239 0.761 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.631 -29.295 4.557 31.172 hybrid contribution 1.723 0.177 2.578 3.106 sum -7.908 -29.118 7.135 31.005 Atomic orbital electron populations 1.24020 0.95801 1.02572 0.97681 1.22986 0.96220 0.98026 1.02429 1.20300 0.91208 0.95533 0.88926 1.45075 1.42802 1.19327 1.32551 1.15945 0.79057 0.83266 0.81695 1.91000 1.70980 1.35359 1.46837 1.42484 1.42892 1.15634 1.32147 1.17440 0.96291 0.88832 0.93364 1.21215 0.96172 0.94738 0.99688 1.21328 0.98814 0.96001 0.96225 1.17837 0.96174 0.87680 0.93591 1.43666 1.43786 1.11618 1.33698 1.20532 0.81181 0.84004 0.82556 1.90724 1.37285 1.83306 1.25382 1.23538 1.02852 0.97007 1.06993 1.85457 1.63845 1.02830 1.30859 1.22862 1.33483 0.97842 1.14336 0.90857 1.24991 0.95631 0.98213 0.94709 1.70014 1.38354 1.25328 1.16497 0.86160 0.79692 0.80464 0.79129 1.20255 1.20744 1.19692 1.20635 1.00506 0.96099 0.98079 1.20535 1.02038 0.97954 0.94364 0.87825 0.88000 0.86699 0.90889 0.90465 0.76927 0.76132 0.84047 0.83732 0.75603 0.88847 0.88849 0.92137 0.85415 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 14.32 29.02 0.42 -0.26 16 2 C -0.18 -0.80 9.63 -36.03 -0.35 -1.15 16 3 C 0.16 1.14 6.11 -5.19 -0.03 1.11 16 4 N -0.74 -5.15 5.55 -66.41 -0.37 -5.52 16 5 C 0.70 7.65 8.41 -86.92 -0.73 6.92 16 6 O -0.57 -8.96 13.78 5.28 0.07 -8.89 16 7 N -0.68 -6.06 5.35 -14.19 -0.08 -6.14 16 8 C 0.14 1.60 6.30 -83.61 -0.53 1.07 16 9 C -0.10 -1.44 8.69 -39.42 -0.34 -1.78 16 10 C -0.10 -1.65 8.69 -39.42 -0.34 -2.00 16 11 C 0.14 2.03 6.30 -83.62 -0.53 1.51 16 12 N -0.68 -9.63 5.34 -9.83 -0.05 -9.68 16 13 C 0.53 10.01 7.69 -10.99 -0.08 9.92 16 14 O -0.49 -11.33 13.31 5.54 0.07 -11.25 16 15 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.13 -1.47 9.96 -39.42 -0.39 -1.87 16 26 C -0.13 -1.29 9.96 -39.42 -0.39 -1.68 16 27 H 0.10 0.30 8.06 -52.49 -0.42 -0.13 16 28 H 0.10 0.44 7.84 -52.48 -0.41 0.02 16 29 H 0.12 0.37 8.06 -52.49 -0.42 -0.06 16 30 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 1.44 8.48 -40.82 -0.35 1.10 16 33 H 0.40 1.92 8.84 -40.82 -0.36 1.56 16 34 H 0.14 2.25 6.22 -52.49 -0.33 1.92 16 35 H 0.15 2.65 6.24 -52.49 -0.33 2.32 16 36 H 0.41 4.21 8.82 -40.82 -0.36 3.85 16 37 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -37.90 372.22 -9.17 -47.06 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.04 Total: 5.65 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.88 Total: -3.99 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.24 Total: -46.85 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.15 Total: -20.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.90 -9.17 -47.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032938717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -37.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds