Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00424 * 2 1 4 4 N 1.46502 * 109.47197 * 125.00050 * 3 2 1 5 5 C 1.34784 * 120.00295 * 180.02562 * 4 3 2 6 6 O 1.21592 * 119.99681 * 359.97438 * 5 4 3 7 7 N 1.34766 * 120.00243 * 179.97438 * 5 4 3 8 8 C 1.40115 * 120.00264 * 184.61680 * 7 5 4 9 9 C 1.38858 * 119.99647 * 324.90875 * 8 7 5 10 10 C 1.38056 * 119.99755 * 180.27411 * 9 8 7 11 11 C 1.38859 * 119.99633 * 359.45096 * 10 9 8 12 12 N 1.40095 * 119.99822 * 180.28032 * 11 10 9 13 13 C 1.34778 * 120.00347 * 35.35165 * 12 11 10 14 14 O 1.21298 * 119.99880 * 355.37293 * 13 12 11 15 15 C 1.50695 * 120.00112 * 175.36937 * 13 12 11 16 16 S 1.81000 * 109.47035 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00178 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99810 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99794 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47346 * 89.99605 * 21 19 17 23 23 H 1.48500 * 109.47254 * 209.99752 * 21 19 17 24 24 H 1.48506 * 109.47301 * 329.99525 * 21 19 17 25 25 C 1.38860 * 120.00143 * 0.56791 * 11 10 9 26 26 C 1.38045 * 120.00025 * 359.70890 * 25 11 10 27 27 H 1.07994 * 120.00444 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99399 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99888 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47129 * 5.00373 * 3 2 1 31 31 H 1.09001 * 109.47583 * 244.99997 * 3 2 1 32 32 H 0.97004 * 120.00203 * 359.97438 * 4 3 2 33 33 H 0.97004 * 120.00127 * 4.61723 * 7 5 4 34 34 H 1.08001 * 119.99954 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.99451 * 179.72342 * 10 9 8 36 36 H 0.96996 * 119.99898 * 215.35964 * 12 11 10 37 37 H 1.08997 * 109.47513 * 300.00112 * 15 13 12 38 38 H 1.08998 * 109.47387 * 60.00625 * 15 13 12 39 39 H 0.97005 * 120.00052 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.00271 * 179.68342 * 25 11 10 41 41 H 1.08000 * 120.00316 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7785 2.4089 1.3335 6 8 3.7145 3.3582 0.5765 7 7 4.6338 2.4337 2.3746 8 6 5.3790 3.5898 2.6418 9 6 5.8352 4.3791 1.5944 10 6 6.5743 5.5152 1.8574 11 6 6.8516 5.8746 3.1697 12 7 7.5966 7.0306 3.4368 13 6 7.4580 8.1179 2.6524 14 8 6.7526 8.0688 1.6669 15 6 8.1794 9.3945 2.9999 16 16 7.7934 10.6607 1.7655 17 6 8.7405 12.0046 2.3992 18 1 9.3223 11.8777 3.3002 19 6 8.7389 13.2263 1.7404 20 7 8.0303 13.3808 0.6421 21 14 9.7436 14.6508 2.4119 22 1 11.1065 14.6162 1.8231 23 1 9.0835 15.9328 2.0570 24 1 9.8396 14.5358 3.8893 25 6 6.3957 5.0850 4.2170 26 6 5.6616 3.9459 3.9538 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5399 0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6214 1.4026 -0.9314 32 1 3.0446 0.5746 1.7356 33 1 4.7337 1.6511 2.9391 34 1 5.6160 4.1017 0.5739 35 1 6.9329 6.1266 1.0426 36 1 8.2122 7.0485 4.1861 37 1 7.8585 9.7369 3.9837 38 1 9.2541 9.2132 3.0110 39 1 8.0288 14.2348 0.1819 40 1 6.6158 5.3618 5.2375 41 1 5.3073 3.3315 4.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032938717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = -35.080053 kcal Electronic energy + Delta-G solvation = -24293.525971 eV Core-core repulsion = 20492.470829 eV Total energy + Delta-G solvation = -3801.055143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85230 -41.18424 -39.37071 -37.05767 -36.29054 -34.95318 -34.58776 -33.59954 -31.93325 -31.37035 -29.05758 -27.67036 -26.86444 -24.21328 -23.72863 -22.01999 -21.66776 -21.09568 -19.95493 -19.41712 -18.71026 -18.60076 -17.87919 -16.99741 -16.88197 -16.74587 -16.41280 -16.12022 -15.95191 -15.66343 -15.24999 -14.98764 -14.80334 -14.52750 -14.37944 -14.19895 -13.94631 -13.67946 -13.61346 -13.34018 -13.17014 -12.89157 -12.67752 -12.61479 -12.05082 -11.82167 -11.74062 -11.28624 -11.14436 -10.93394 -10.76221 -10.58097 -10.28435 -10.08178 -9.88171 -8.73174 -8.64449 -8.34746 -6.13604 0.19633 0.44642 1.06430 1.24217 1.43075 1.45504 1.51787 1.56867 1.77455 2.00425 2.19513 2.26966 2.86480 2.99723 3.23577 3.29343 3.81673 3.84434 4.00846 4.06183 4.16122 4.27532 4.40187 4.47050 4.49153 4.54158 4.58507 4.73208 4.82524 4.99200 5.13178 5.28206 5.32409 5.37276 5.41907 5.53463 5.55348 5.64208 5.77731 5.94181 6.08501 6.19710 6.40922 6.97307 7.06416 7.14105 7.44915 8.74536 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.001789 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.817897 B =15649.261155 C =16583.249029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.178 4.178 3 C 0.162 3.838 4 N -0.720 5.720 5 C 0.693 3.307 6 O -0.622 6.622 7 N -0.666 5.666 8 C 0.140 3.860 9 C -0.120 4.120 10 C -0.128 4.128 11 C 0.118 3.882 12 N -0.654 5.654 13 C 0.531 3.469 14 O -0.546 6.546 15 C -0.126 4.126 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.086 0.914 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.256 1.256 25 C -0.113 4.113 26 C -0.111 4.111 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.417 0.583 33 H 0.428 0.572 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.430 0.570 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.271 0.729 40 H 0.168 0.832 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -32.661 11.301 35.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.038 3.962 4 N -0.377 5.377 5 C 0.393 3.607 6 O -0.502 6.502 7 N -0.316 5.316 8 C 0.044 3.956 9 C -0.141 4.141 10 C -0.149 4.149 11 C 0.023 3.977 12 N -0.302 5.302 13 C 0.318 3.682 14 O -0.422 6.422 15 C -0.277 4.277 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.104 0.896 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.180 1.180 25 C -0.134 4.134 26 C -0.131 4.131 27 H 0.141 0.859 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.267 0.733 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.270 0.730 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.186 0.814 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.202 -31.794 8.848 34.261 hybrid contribution 1.504 0.692 1.289 2.098 sum -7.698 -31.101 10.137 33.605 Atomic orbital electron populations 1.24191 0.95759 1.03224 0.96555 1.22905 0.96201 0.97171 1.03325 1.20300 0.90861 0.96713 0.88321 1.44899 1.41443 1.18746 1.32584 1.16234 0.79530 0.83381 0.81521 1.90984 1.72608 1.37725 1.48842 1.42256 1.41690 1.15747 1.31869 1.17562 0.95490 0.89024 0.93503 1.21052 0.97622 0.95667 0.99772 1.21090 1.00618 0.96652 0.96568 1.17994 0.97711 0.88258 0.93699 1.43253 1.43607 1.10240 1.33130 1.20359 0.80601 0.84802 0.82444 1.90731 1.39644 1.84129 1.27690 1.23347 1.04396 0.94967 1.05007 1.85702 1.65028 1.06439 1.35516 1.23215 1.33371 0.98073 1.14666 0.89570 1.26156 0.96754 1.01494 0.94828 1.70193 1.40288 1.26203 1.18239 0.84926 0.77766 0.76034 0.79072 1.19308 1.20437 1.17975 1.21057 0.98522 0.95022 0.98766 1.21019 1.00124 0.97585 0.94414 0.85928 0.88643 0.84711 0.92604 0.91919 0.74550 0.73250 0.86573 0.87631 0.73023 0.86445 0.86451 0.92025 0.81419 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 14.32 67.79 0.97 -0.10 16 2 C -0.18 -1.33 9.63 25.65 0.25 -1.08 16 3 C 0.16 2.27 6.11 85.63 0.52 2.80 16 4 N -0.72 -9.27 5.55 -482.29 -2.68 -11.95 16 5 C 0.69 15.02 8.41 179.06 1.51 16.53 16 6 O -0.62 -20.95 13.78 -4.01 -0.06 -21.01 16 7 N -0.67 -10.52 5.35 -317.06 -1.70 -12.22 16 8 C 0.14 3.10 6.30 38.11 0.24 3.34 16 9 C -0.12 -3.76 8.69 22.38 0.19 -3.57 16 10 C -0.13 -4.41 8.69 22.38 0.19 -4.21 16 11 C 0.12 3.27 6.30 38.12 0.24 3.51 16 12 N -0.65 -17.70 5.34 -303.38 -1.62 -19.32 16 13 C 0.53 20.34 7.69 87.66 0.67 21.01 16 14 O -0.55 -26.63 13.31 -3.09 -0.04 -26.67 16 15 C -0.13 -4.97 6.16 71.23 0.44 -4.54 16 16 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 17 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 18 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 19 C 0.01 0.71 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 21 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C -0.11 -2.08 9.96 22.37 0.22 -1.86 16 26 C -0.11 -1.76 9.96 22.37 0.22 -1.54 16 27 H 0.12 0.39 8.06 -2.91 -0.02 0.37 16 28 H 0.10 0.76 7.84 -2.91 -0.02 0.74 16 29 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.42 1.97 8.48 -92.71 -0.79 1.18 16 33 H 0.43 2.49 8.84 -92.70 -0.82 1.67 16 34 H 0.12 4.16 6.22 -2.91 -0.02 4.14 16 35 H 0.11 4.39 6.24 -2.91 -0.02 4.37 16 36 H 0.43 7.56 8.82 -92.71 -0.82 6.75 16 37 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 38 H 0.12 4.06 8.14 -2.40 -0.02 4.04 16 39 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -90.84 372.22 0.52 -90.32 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -1.33 Total: 20.57 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.79 Total: 0.85 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.71 Total: -100.11 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.10 Total: -47.68 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -90.84 0.52 -90.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032938717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.237 kcal (2) G-P(sol) polarization free energy of solvation -90.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds