Wall clock time and date at job start Tue Mar 31 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30500 * 125.65192 * 2 1 4 4 C 1.34129 * 109.26045 * 180.02562 * 3 2 1 5 5 S 1.76196 * 125.98964 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.39975 * 203.56641 * 5 4 3 7 7 O 1.42096 * 106.40434 * 336.48400 * 5 4 3 8 8 N 1.65602 * 107.21809 * 90.02965 * 5 4 3 9 9 C 1.46497 * 120.00141 * 84.54648 * 8 5 4 10 10 C 1.50697 * 109.47211 * 95.00255 * 9 8 5 11 11 H 1.08003 * 119.99860 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00056 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99964 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99914 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46978 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47125 * 119.99699 * 14 12 10 17 17 H 1.48503 * 109.46945 * 239.99945 * 14 12 10 18 18 C 1.39677 * 119.99442 * 264.54418 * 8 5 4 19 19 C 1.38909 * 120.07588 * 58.37401 * 18 8 5 20 20 C 1.38104 * 119.92699 * 179.76366 * 19 18 8 21 21 C 1.38277 * 120.07131 * 0.51159 * 20 19 18 22 22 C 1.38284 * 120.15333 * 359.74268 * 21 20 19 23 23 C 1.38103 * 120.07255 * 359.97438 * 22 21 20 24 24 C 1.34674 * 108.01652 * 359.73702 * 4 3 2 25 25 N 1.35049 * 125.65352 * 180.02562 * 2 1 3 26 26 C 1.46502 * 126.39323 * 359.96302 * 25 2 1 27 27 H 1.08999 * 109.47479 * 269.95604 * 1 2 3 28 28 H 1.08999 * 109.47212 * 29.95599 * 1 2 3 29 29 H 1.09006 * 109.47460 * 149.95709 * 1 2 3 30 30 H 1.09005 * 109.46923 * 215.00113 * 9 8 5 31 31 H 1.08998 * 109.46964 * 335.00250 * 9 8 5 32 32 H 0.97001 * 119.99714 * 180.02562 * 13 12 10 33 33 H 1.08010 * 120.03514 * 359.97438 * 19 18 8 34 34 H 1.07997 * 119.96352 * 180.24943 * 20 19 18 35 35 H 1.08004 * 119.92663 * 179.71856 * 21 20 19 36 36 H 1.07995 * 119.96683 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.03577 * 179.97438 * 23 22 21 38 38 H 1.08005 * 126.59076 * 180.28384 * 24 4 3 39 39 H 1.09003 * 109.46959 * 90.00272 * 26 25 2 40 40 H 1.09001 * 109.47572 * 330.00260 * 26 25 2 41 41 H 1.09000 * 109.47255 * 210.00057 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 16 4.9500 1.7574 -0.0014 6 8 6.0302 1.0125 -0.5469 7 8 4.5046 2.9923 -0.5453 8 7 5.3395 2.0562 1.5801 9 6 6.1915 1.1178 2.3146 10 6 7.6235 1.5826 2.2494 11 1 7.8740 2.4866 1.7140 12 6 8.6141 0.8535 2.8723 13 7 8.3092 -0.2475 3.5239 14 14 10.3893 1.4294 2.7909 15 1 10.4664 2.6858 2.0031 16 1 10.8936 1.6749 4.1658 17 1 11.2191 0.3849 2.1384 18 6 4.8557 3.2032 2.2137 19 6 3.4873 3.4252 2.3016 20 6 3.0122 4.5578 2.9331 21 6 3.8972 5.4756 3.4681 22 6 5.2602 5.2604 3.3778 23 6 5.7420 4.1270 2.7528 24 6 3.5925 -0.6643 0.0049 25 7 2.2941 -1.0973 -0.0005 26 6 1.8425 -2.4910 -0.0004 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8904 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 5.8708 1.0740 3.3555 31 1 6.1104 0.1271 1.8674 32 1 9.0061 -0.7603 3.9624 33 1 2.7955 2.7110 1.8796 34 1 1.9483 4.7289 3.0053 35 1 3.5232 6.3628 3.9575 36 1 5.9488 5.9794 3.7964 37 1 6.8066 3.9597 2.6823 38 1 4.4776 -1.2832 0.0103 39 1 1.7300 -2.8366 -1.0280 40 1 0.8841 -2.5625 0.5139 41 1 2.5774 -3.1111 0.5131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050253629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:31 Heat of formation + Delta-G solvation = 22.648189 kcal Electronic energy + Delta-G solvation = -27294.736894 eV Core-core repulsion = 23496.185036 eV Total energy + Delta-G solvation = -3798.551858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21016 -38.83250 -36.50788 -35.29279 -35.11568 -34.25583 -32.55393 -32.00566 -30.35171 -29.17056 -27.67576 -26.98175 -26.66153 -22.83036 -22.37774 -21.87546 -21.36217 -20.21616 -18.57429 -17.77911 -17.06593 -16.57720 -16.18833 -15.82531 -15.55699 -15.42814 -14.66107 -14.36958 -14.20656 -14.01902 -13.79031 -13.64953 -13.26174 -12.91737 -12.84371 -12.76529 -12.61322 -12.54411 -12.22816 -11.81509 -11.52964 -11.37302 -11.22251 -11.10523 -11.00199 -10.94116 -10.75428 -10.47542 -10.19148 -10.06007 -9.89856 -9.65881 -8.81939 -8.65657 -8.47377 -8.34913 -7.64627 -6.10453 -4.13851 0.98546 1.69727 1.92564 2.00459 2.54054 2.64023 3.30531 3.38217 3.43858 3.73746 4.21510 4.30749 4.40168 4.42220 4.47384 4.61293 4.78078 5.02148 5.07389 5.10772 5.24754 5.27760 5.43832 5.47734 5.53395 5.58069 5.66518 5.91135 5.98461 6.01623 6.17487 6.29007 6.48299 6.62871 6.91202 6.96944 7.06728 7.09319 7.18233 7.35567 7.41787 7.79388 7.81969 7.91636 8.12808 8.87681 9.51035 10.98472 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010421 B = 0.005379 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.275041 B = 5203.790969 C = 6901.225481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.197 3.803 3 N -0.410 5.410 4 C -0.555 4.555 5 S 2.714 3.286 6 O -0.936 6.936 7 O -0.951 6.951 8 N -0.936 5.936 9 C 0.254 3.746 10 C -0.526 4.526 11 H 0.066 0.934 12 C 0.064 3.936 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.178 3.822 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.114 4.114 23 C -0.109 4.109 24 C 0.071 3.929 25 N -0.457 5.457 26 C 0.066 3.934 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.196 0.804 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.809 -2.240 -2.979 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.069 4.069 3 N -0.128 5.128 4 C -0.764 4.764 5 S 2.800 3.200 6 O -0.926 6.926 7 O -0.941 6.941 8 N -0.767 5.767 9 C 0.134 3.866 10 C -0.565 4.565 11 H 0.084 0.916 12 C -0.138 4.138 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.208 1.208 18 C 0.083 3.917 19 C -0.158 4.158 20 C -0.129 4.129 21 C -0.158 4.158 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.069 4.069 25 N -0.138 5.138 26 C -0.076 4.076 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.213 0.787 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.651 -1.514 -3.650 16.142 hybrid contribution 0.808 -1.417 0.392 1.678 sum -14.843 -2.932 -3.258 15.477 Atomic orbital electron populations 1.20192 0.84371 1.04156 1.03711 1.23666 0.96009 0.81405 1.05794 1.70253 0.99203 1.27444 1.15937 1.33859 1.12612 1.07466 1.22481 1.01676 0.72408 0.73236 0.72645 1.93626 1.49548 1.73699 1.75753 1.93529 1.82633 1.41678 1.76277 1.55472 1.61071 1.29303 1.30855 1.19255 0.88581 0.86196 0.92547 1.21490 0.91409 1.10071 1.33519 0.91587 1.24906 0.99275 0.94721 0.94890 1.69924 1.33526 1.15519 1.34509 0.86458 0.84365 0.79090 0.77708 1.19407 1.20954 1.20803 1.17339 0.91379 0.86747 0.96261 1.21337 0.94240 0.99274 1.00935 1.20792 0.99138 0.94213 0.98726 1.21011 0.93566 0.99488 1.01735 1.21010 0.95295 0.97350 0.99659 1.21592 1.01330 0.92216 0.97890 1.22796 0.87746 0.95259 1.01125 1.45565 1.06516 1.08151 1.53588 1.22177 1.02485 0.78960 1.04007 0.89928 0.88801 0.90842 0.94151 0.94169 0.92713 0.85763 0.86452 0.86714 0.86254 0.83981 0.78677 0.90056 0.89082 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 9.97 36.00 0.36 -0.19 16 2 C 0.20 2.68 7.90 -155.41 -1.23 1.46 16 3 N -0.41 -7.32 10.45 -10.02 -0.10 -7.43 16 4 C -0.56 -10.48 7.02 -17.81 -0.13 -10.61 16 5 S 2.71 59.94 5.50 -107.50 -0.59 59.35 16 6 O -0.94 -22.57 17.02 -57.17 -0.97 -23.54 16 7 O -0.95 -22.55 16.86 -57.17 -0.96 -23.51 16 8 N -0.94 -21.16 2.86 -59.81 -0.17 -21.33 16 9 C 0.25 6.38 4.96 -5.20 -0.03 6.35 16 10 C -0.53 -14.33 8.19 -34.44 -0.28 -14.61 16 11 H 0.07 1.80 6.98 -52.48 -0.37 1.43 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.18 3.79 4.94 -83.79 -0.41 3.38 16 19 C -0.14 -2.62 9.28 -39.38 -0.37 -2.99 16 20 C -0.11 -1.79 10.04 -39.62 -0.40 -2.19 16 21 C -0.14 -2.14 10.04 -39.55 -0.40 -2.54 16 22 C -0.11 -1.92 10.04 -39.61 -0.40 -2.32 16 23 C -0.11 -2.22 9.51 -39.38 -0.37 -2.59 16 24 C 0.07 1.12 11.31 -16.56 -0.19 0.93 16 25 N -0.46 -5.70 3.15 -121.27 -0.38 -6.08 16 26 C 0.07 0.45 10.79 59.85 0.65 1.09 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.41 7.71 -51.93 -0.40 0.01 16 30 H 0.04 1.05 8.09 -51.93 -0.42 0.63 16 31 H 0.04 1.02 7.76 -51.93 -0.40 0.62 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.12 2.35 7.13 -52.48 -0.37 1.97 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.14 3.03 6.19 -52.48 -0.32 2.71 16 38 H 0.20 2.72 8.06 -52.48 -0.42 2.30 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.41 7.66 -51.93 -0.40 0.01 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -36.15 364.06 -10.48 -46.62 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.20 Total: 1.89 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.29 Total: -23.16 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.08 Total: -59.47 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.94 Total: -47.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 59.94 SS G_CDS: -0.59 Total: 59.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.15 -10.48 -46.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050253629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.271 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds