Wall clock time and date at job start Tue Mar 31 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30500 * 125.65192 * 2 1 4 4 C 1.34129 * 109.26045 * 180.02562 * 3 2 1 5 5 S 1.76196 * 125.98964 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.39975 * 203.56641 * 5 4 3 7 7 O 1.42096 * 106.40434 * 336.48400 * 5 4 3 8 8 N 1.65602 * 107.21809 * 90.02965 * 5 4 3 9 9 C 1.46497 * 120.00141 * 84.54648 * 8 5 4 10 10 C 1.50697 * 109.47211 * 95.00255 * 9 8 5 11 11 H 1.08003 * 119.99860 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00056 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99964 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99914 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46978 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47125 * 119.99699 * 14 12 10 17 17 H 1.48503 * 109.46945 * 239.99945 * 14 12 10 18 18 C 1.39677 * 119.99442 * 264.54418 * 8 5 4 19 19 C 1.38909 * 120.07588 * 58.37401 * 18 8 5 20 20 C 1.38104 * 119.92699 * 179.76366 * 19 18 8 21 21 C 1.38277 * 120.07131 * 0.51159 * 20 19 18 22 22 C 1.38284 * 120.15333 * 359.74268 * 21 20 19 23 23 C 1.38103 * 120.07255 * 359.97438 * 22 21 20 24 24 C 1.34674 * 108.01652 * 359.73702 * 4 3 2 25 25 N 1.35049 * 125.65352 * 180.02562 * 2 1 3 26 26 C 1.46502 * 126.39323 * 359.96302 * 25 2 1 27 27 H 1.08999 * 109.47479 * 269.95604 * 1 2 3 28 28 H 1.08999 * 109.47212 * 29.95599 * 1 2 3 29 29 H 1.09006 * 109.47460 * 149.95709 * 1 2 3 30 30 H 1.09005 * 109.46923 * 215.00113 * 9 8 5 31 31 H 1.08998 * 109.46964 * 335.00250 * 9 8 5 32 32 H 0.97001 * 119.99714 * 180.02562 * 13 12 10 33 33 H 1.08010 * 120.03514 * 359.97438 * 19 18 8 34 34 H 1.07997 * 119.96352 * 180.24943 * 20 19 18 35 35 H 1.08004 * 119.92663 * 179.71856 * 21 20 19 36 36 H 1.07995 * 119.96683 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.03577 * 179.97438 * 23 22 21 38 38 H 1.08005 * 126.59076 * 180.28384 * 24 4 3 39 39 H 1.09003 * 109.46959 * 90.00272 * 26 25 2 40 40 H 1.09001 * 109.47572 * 330.00260 * 26 25 2 41 41 H 1.09000 * 109.47255 * 210.00057 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 16 4.9500 1.7574 -0.0014 6 8 6.0302 1.0125 -0.5469 7 8 4.5046 2.9923 -0.5453 8 7 5.3395 2.0562 1.5801 9 6 6.1915 1.1178 2.3146 10 6 7.6235 1.5826 2.2494 11 1 7.8740 2.4866 1.7140 12 6 8.6141 0.8535 2.8723 13 7 8.3092 -0.2475 3.5239 14 14 10.3893 1.4294 2.7909 15 1 10.4664 2.6858 2.0031 16 1 10.8936 1.6749 4.1658 17 1 11.2191 0.3849 2.1384 18 6 4.8557 3.2032 2.2137 19 6 3.4873 3.4252 2.3016 20 6 3.0122 4.5578 2.9331 21 6 3.8972 5.4756 3.4681 22 6 5.2602 5.2604 3.3778 23 6 5.7420 4.1270 2.7528 24 6 3.5925 -0.6643 0.0049 25 7 2.2941 -1.0973 -0.0005 26 6 1.8425 -2.4910 -0.0004 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8904 -0.5131 29 1 -0.3634 -0.8896 -0.5145 30 1 5.8708 1.0740 3.3555 31 1 6.1104 0.1271 1.8674 32 1 9.0061 -0.7603 3.9624 33 1 2.7955 2.7110 1.8796 34 1 1.9483 4.7289 3.0053 35 1 3.5232 6.3628 3.9575 36 1 5.9488 5.9794 3.7964 37 1 6.8066 3.9597 2.6823 38 1 4.4776 -1.2832 0.0103 39 1 1.7300 -2.8366 -1.0280 40 1 0.8841 -2.5625 0.5139 41 1 2.5774 -3.1111 0.5131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050253629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:30 Heat of formation + Delta-G solvation = -1.993261 kcal Electronic energy + Delta-G solvation = -27295.805428 eV Core-core repulsion = 23496.185036 eV Total energy + Delta-G solvation = -3799.620392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.32559 -40.29952 -38.31140 -36.98660 -36.90929 -35.24344 -34.59452 -32.94303 -31.76421 -30.79025 -28.58937 -28.54367 -27.86871 -24.79510 -23.71664 -23.21462 -22.88165 -21.21607 -20.11820 -19.16929 -18.86297 -18.33209 -17.66392 -17.09185 -16.88193 -16.87347 -16.39811 -15.97534 -15.66737 -15.33578 -14.83085 -14.71602 -14.51968 -14.26203 -14.19391 -14.00438 -13.56679 -13.54493 -13.48774 -13.36019 -13.24352 -13.18143 -13.04367 -12.81187 -12.67479 -12.64110 -12.39460 -12.11679 -12.07101 -11.55458 -11.29387 -10.91969 -10.61613 -10.47252 -9.91004 -9.75542 -9.20068 -8.21908 -6.32409 -0.66977 0.47180 0.50910 0.59134 1.39428 1.41464 1.43469 1.54003 1.63671 2.11807 2.41261 2.72482 2.94641 3.07829 3.12586 3.58660 3.72751 3.86552 4.04936 4.13592 4.19228 4.27933 4.34605 4.43221 4.55249 4.62463 4.64991 4.70975 4.76820 4.87640 4.93419 4.97614 5.11150 5.16015 5.22788 5.27516 5.54004 5.66556 5.70801 5.81449 5.88055 6.02585 6.05108 6.32291 6.65498 6.73043 7.35309 8.86868 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010421 B = 0.005379 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.275041 B = 5203.790969 C = 6901.225481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.207 3.793 3 N -0.455 5.455 4 C -0.582 4.582 5 S 2.721 3.279 6 O -0.973 6.973 7 O -0.979 6.979 8 N -0.940 5.940 9 C 0.272 3.728 10 C -0.540 4.540 11 H 0.056 0.944 12 C 0.018 3.982 13 N -0.923 5.923 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.277 1.277 18 C 0.140 3.860 19 C -0.152 4.152 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.140 4.140 24 C 0.071 3.929 25 N -0.447 5.447 26 C 0.053 3.947 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.205 0.795 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 -2.211 -2.187 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.060 4.060 3 N -0.174 5.174 4 C -0.795 4.795 5 S 2.813 3.187 6 O -0.963 6.963 7 O -0.969 6.969 8 N -0.770 5.770 9 C 0.150 3.850 10 C -0.579 4.579 11 H 0.074 0.926 12 C -0.181 4.181 13 N -0.563 5.563 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.202 1.202 18 C 0.046 3.954 19 C -0.173 4.173 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.161 4.161 24 C -0.073 4.073 25 N -0.127 5.127 26 C -0.087 4.087 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.118 -1.459 -2.855 18.400 hybrid contribution 1.372 -1.461 0.160 2.011 sum -16.746 -2.920 -2.694 17.211 Atomic orbital electron populations 1.20490 0.80351 1.06042 1.05465 1.24657 0.97917 0.80693 1.02686 1.70168 0.98845 1.29901 1.18447 1.32915 1.12280 1.07980 1.26366 1.00869 0.72723 0.72919 0.72171 1.93563 1.51955 1.74161 1.76634 1.93467 1.83122 1.43480 1.76811 1.55250 1.61434 1.29790 1.30550 1.18820 0.88212 0.86304 0.91615 1.21710 0.92817 1.09871 1.33524 0.92618 1.25671 1.03144 0.94829 0.94499 1.70006 1.34873 1.16318 1.35056 0.85544 0.79608 0.78613 0.78231 1.19381 1.19578 1.20244 1.17698 0.92710 0.86888 0.98076 1.21482 0.93182 1.00731 1.01870 1.21285 1.01361 0.92823 0.96945 1.21523 0.92507 1.00300 1.00010 1.21379 0.96986 0.96291 0.98381 1.21621 1.00227 0.94142 1.00131 1.22956 0.89779 0.94401 1.00186 1.45882 1.04891 1.10275 1.51632 1.22691 1.04133 0.75678 1.06156 0.88062 0.88741 0.87145 0.95901 0.95332 0.92277 0.86128 0.82738 0.82064 0.83314 0.86391 0.77817 0.87817 0.85918 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.97 71.23 0.71 -0.15 16 2 C 0.21 5.31 7.90 138.12 1.09 6.40 16 3 N -0.45 -16.38 10.45 -185.63 -1.94 -18.32 16 4 C -0.58 -22.92 7.02 83.52 0.59 -22.33 16 5 S 2.72 128.68 5.50 -56.49 -0.31 128.37 16 6 O -0.97 -50.44 17.02 -128.00 -2.18 -52.61 16 7 O -0.98 -49.44 16.86 -128.00 -2.16 -51.59 16 8 N -0.94 -45.50 2.86 -343.14 -0.98 -46.49 16 9 C 0.27 14.58 4.96 85.63 0.42 15.01 16 10 C -0.54 -31.06 8.19 25.60 0.21 -30.85 16 11 H 0.06 3.24 6.98 -2.91 -0.02 3.22 16 12 C 0.02 1.04 5.46 84.65 0.46 1.50 16 13 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 14 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C 0.14 6.29 4.94 38.21 0.19 6.48 16 19 C -0.15 -5.91 9.28 22.40 0.21 -5.70 16 20 C -0.11 -3.22 10.04 22.25 0.22 -3.00 16 21 C -0.13 -3.46 10.04 22.29 0.22 -3.24 16 22 C -0.11 -3.64 10.04 22.25 0.22 -3.42 16 23 C -0.14 -5.93 9.51 22.40 0.21 -5.72 16 24 C 0.07 2.27 11.31 83.09 0.94 3.21 16 25 N -0.45 -10.37 3.15 -537.60 -1.69 -12.06 16 26 C 0.05 0.54 10.79 127.77 1.38 1.91 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 0.66 7.71 -2.38 -0.02 0.64 16 30 H 0.02 1.28 8.09 -2.38 -0.02 1.26 16 31 H 0.03 1.57 7.76 -2.39 -0.02 1.55 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.12 4.71 7.13 -2.91 -0.02 4.69 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.12 5.44 6.19 -2.91 -0.02 5.42 16 38 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.12 0.51 7.66 -2.39 -0.02 0.50 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -84.40 364.06 1.18 -83.23 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.05 Total: 16.02 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 7.08 Total: -39.90 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -4.33 Total: -130.29 kcal Atomic # 8 Polarization: -99.87 SS G_CDS: -4.34 Total: -104.21 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 128.68 SS G_CDS: -0.31 Total: 128.37 kcal Total: -84.40 1.18 -83.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050253629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.232 kcal (2) G-P(sol) polarization free energy of solvation -84.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds