Wall clock time and date at job start Tue Mar 31 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 N 1.46503 * 109.47374 * 179.97438 * 3 2 1 5 5 C 1.37096 * 119.99854 * 270.00317 * 4 3 2 6 6 H 1.08004 * 119.99734 * 145.32851 * 5 4 3 7 7 C 1.38945 * 120.00320 * 325.32479 * 5 4 3 8 8 N 1.31414 * 120.00077 * 337.24639 * 7 5 4 9 9 Si 1.86800 * 120.00216 * 157.24414 * 7 5 4 10 10 H 1.48500 * 109.46846 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46968 * 119.99861 * 9 7 5 12 12 H 1.48491 * 109.47344 * 239.99809 * 9 7 5 13 13 C 1.34774 * 119.99601 * 90.00240 * 4 3 2 14 14 O 1.21292 * 120.00286 * 4.88702 * 13 4 3 15 15 C 1.50697 * 119.99681 * 184.88450 * 13 4 3 16 16 C 1.52997 * 109.47176 * 177.73732 * 15 13 4 17 17 C 1.50706 * 109.47335 * 179.97438 * 16 15 13 18 18 N 1.30972 * 126.42206 * 89.71089 * 17 16 15 19 19 C 1.35265 * 105.57800 * 179.89548 * 18 17 16 20 20 C 1.48227 * 126.42845 * 180.16749 * 19 18 17 21 21 C 1.39592 * 122.84954 * 179.97438 * 20 19 18 22 22 C 1.33160 * 113.73705 * 179.81413 * 21 20 19 23 23 S 1.75734 * 109.74744 * 0.43663 * 22 21 20 24 24 C 1.34458 * 122.84925 * 0.29173 * 20 19 18 25 25 N 1.30882 * 107.14734 * 0.37191 * 19 18 17 26 26 O 1.21290 * 110.07378 * 359.76697 * 25 19 18 27 27 H 1.09006 * 109.46748 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47589 * 299.99467 * 1 2 3 29 29 H 1.09002 * 109.46966 * 59.99846 * 1 2 3 30 30 H 1.09005 * 109.47348 * 240.00053 * 2 1 3 31 31 H 1.09001 * 109.47486 * 120.00217 * 2 1 3 32 32 H 1.09005 * 109.46903 * 59.99781 * 3 2 1 33 33 H 1.08995 * 109.47442 * 300.00622 * 3 2 1 34 34 H 0.97001 * 120.00330 * 184.96402 * 8 7 5 35 35 H 1.08996 * 109.47223 * 57.73828 * 15 13 4 36 36 H 1.09007 * 109.47505 * 297.73480 * 15 13 4 37 37 H 1.09006 * 109.47267 * 60.00375 * 16 15 13 38 38 H 1.09005 * 109.47129 * 299.99954 * 16 15 13 39 39 H 1.08000 * 123.12963 * 0.02988 * 21 20 19 40 40 H 1.08000 * 125.12749 * 180.18285 * 22 21 20 41 41 H 1.08001 * 124.73847 * 359.94516 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4426 1.1882 6 1 5.1262 0.9105 1.2717 7 6 3.6799 2.1273 2.2844 8 7 2.8276 3.1115 2.1059 9 14 4.2055 1.6486 4.0119 10 1 5.1662 0.5185 3.9416 11 1 4.8553 2.8099 4.6711 12 1 3.0134 1.2376 4.7960 13 6 4.1793 1.4424 -1.1663 14 8 3.5766 1.5317 -2.2151 15 6 5.6822 1.3313 -1.1681 16 6 6.1895 1.2981 -2.6111 17 6 7.6925 1.1877 -2.6129 18 7 8.3907 0.0796 -2.6115 19 6 9.6867 0.4670 -2.6165 20 6 10.8716 -0.4237 -2.6206 21 6 12.1815 0.0588 -2.6262 22 6 13.1057 -0.8998 -2.6253 23 16 12.3272 -2.4753 -2.6299 24 6 10.7759 -1.7648 -2.6257 25 7 9.6983 1.7757 -2.6124 26 8 8.5628 2.2021 -2.6103 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 2.5269 3.6362 2.8643 35 1 5.9794 0.4154 -0.6574 36 1 6.1107 2.1905 -0.6520 37 1 5.8923 2.2141 -3.1219 38 1 5.7610 0.4389 -3.1272 39 1 12.4228 1.1115 -2.6273 40 1 14.1729 -0.7340 -2.6261 41 1 9.8468 -2.3155 -2.6263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:26 Heat of formation + Delta-G solvation = 57.719539 kcal Electronic energy + Delta-G solvation = -25494.534275 eV Core-core repulsion = 21697.503224 eV Total energy + Delta-G solvation = -3797.031051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.40913 -38.75739 -38.49440 -35.73833 -35.25081 -33.86074 -32.82202 -31.42171 -30.71222 -29.93830 -26.46402 -25.71806 -25.23452 -23.90208 -22.95832 -21.97043 -20.63785 -19.34686 -19.13213 -18.08133 -17.90542 -17.32165 -16.80134 -16.04850 -15.62693 -15.12220 -14.54090 -14.47707 -14.22653 -13.71815 -13.71413 -13.58302 -13.24460 -13.01751 -12.91630 -12.73889 -12.32421 -12.11847 -12.00486 -11.65806 -11.48781 -11.42308 -11.28362 -11.24896 -11.01618 -10.98407 -10.71279 -10.64464 -10.36363 -10.31028 -10.08925 -9.76431 -9.20639 -9.18818 -8.57696 -8.50158 -7.56231 -6.44738 -4.11029 0.50367 1.23923 1.28584 1.62589 1.86718 2.92168 2.96472 3.05086 3.17872 3.21165 3.57770 3.80575 4.04578 4.10253 4.63189 4.73450 4.89101 4.96331 5.15345 5.25157 5.38991 5.44888 5.58097 5.72434 5.76679 5.80774 5.87937 5.94368 6.02108 6.06865 6.08837 6.27125 6.34110 6.44771 6.49747 6.54256 6.66375 6.78955 7.09134 7.31350 7.47947 7.87767 8.22417 8.30131 8.99692 9.43232 9.86580 10.56508 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002527 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.327589 B =11076.505670 C =11701.144386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.434 5.434 5 C -0.346 4.346 6 H 0.091 0.909 7 C 0.047 3.953 8 N -0.855 5.855 9 Si 0.912 3.088 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.471 3.529 14 O -0.608 6.608 15 C -0.116 4.116 16 C -0.014 4.014 17 C 0.206 3.794 18 N -0.481 5.481 19 C 0.225 3.775 20 C -0.039 4.039 21 C -0.106 4.106 22 C -0.233 4.233 23 S 0.187 5.813 24 C -0.202 4.202 25 N -0.382 5.382 26 O 0.080 5.920 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.271 0.729 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.649 -7.799 -6.181 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.151 5.151 5 C -0.474 4.474 6 H 0.109 0.891 7 C -0.160 4.160 8 N -0.491 5.491 9 Si 0.738 3.262 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.260 3.740 14 O -0.495 6.495 15 C -0.158 4.158 16 C -0.053 4.053 17 C -0.014 4.014 18 N -0.214 5.214 19 C -0.047 4.047 20 C -0.055 4.055 21 C -0.136 4.136 22 C -0.368 4.368 23 S 0.451 5.549 24 C -0.341 4.341 25 N -0.090 5.090 26 O 0.021 5.979 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.188 0.812 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 14.501 -9.079 -6.538 18.316 hybrid contribution -0.454 1.436 1.141 1.889 sum 14.047 -7.643 -5.397 16.878 Atomic orbital electron populations 1.21657 0.96565 1.00454 1.01435 1.21818 0.94717 0.99369 1.01232 1.21516 0.81281 0.94731 1.03912 1.43440 1.04876 1.62300 1.04450 1.19459 1.07742 1.32848 0.87314 0.89130 1.25323 0.96428 0.93985 1.00222 1.69859 1.31703 1.15592 1.31988 0.86118 0.78749 0.78960 0.82380 1.19140 1.20653 1.20375 1.20038 0.88454 0.81226 0.84331 1.90537 1.70346 1.56756 1.31870 1.21346 0.95825 1.04670 0.93916 1.20145 0.78054 1.06920 1.00174 1.29075 0.98130 0.80656 0.93501 1.72022 1.00907 1.27216 1.21275 1.23371 0.91595 0.88203 1.01498 1.16364 0.89500 0.90596 1.09004 1.20145 0.90330 1.01370 1.01772 1.25605 1.03787 0.95546 1.11881 1.83132 0.94606 1.08040 1.69095 1.25210 1.04402 0.97768 1.06768 1.74905 0.99852 1.12561 1.21637 1.85288 1.10766 1.36346 1.65523 0.93628 0.92962 0.93117 0.93120 0.92278 0.87421 0.92565 0.91859 0.89503 0.88768 0.87326 0.86809 0.83297 0.81189 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.11 2.52 5.04 -4.04 -0.02 2.50 16 4 N -0.43 -10.43 2.54 -114.81 -0.29 -10.73 16 5 C -0.35 -8.40 8.73 -14.94 -0.13 -8.53 16 6 H 0.09 2.11 6.95 -52.48 -0.36 1.75 16 7 C 0.05 1.15 4.95 -17.47 -0.09 1.06 16 8 N -0.86 -21.84 11.34 55.50 0.63 -21.21 16 9 Si 0.91 18.94 29.61 -169.99 -5.03 13.91 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.47 10.67 7.62 -10.99 -0.08 10.59 16 14 O -0.61 -14.81 15.54 5.55 0.09 -14.72 16 15 C -0.12 -2.14 4.30 -27.89 -0.12 -2.26 16 16 C -0.01 -0.21 5.13 -27.88 -0.14 -0.35 16 17 C 0.21 3.23 7.75 -12.98 -0.10 3.13 16 18 N -0.48 -7.81 11.48 -9.85 -0.11 -7.92 16 19 C 0.23 3.54 7.88 -156.06 -1.23 2.31 16 20 C -0.04 -0.51 5.80 -106.62 -0.62 -1.13 16 21 C -0.11 -1.16 10.03 -40.85 -0.41 -1.57 16 22 C -0.23 -1.96 11.20 28.96 0.32 -1.64 16 23 S 0.19 1.51 23.09 -107.50 -2.48 -0.97 16 24 C -0.20 -2.25 10.67 29.40 0.31 -1.93 16 25 N -0.38 -6.18 12.11 30.99 0.38 -5.81 16 26 O 0.08 1.28 11.29 18.04 0.20 1.48 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.66 5.36 -51.93 -0.28 2.38 16 33 H 0.06 1.35 7.36 -51.93 -0.38 0.96 16 34 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 35 H 0.09 1.56 7.68 -51.93 -0.40 1.16 16 36 H 0.09 1.73 8.10 -51.92 -0.42 1.31 16 37 H 0.11 1.60 8.08 -51.93 -0.42 1.19 16 38 H 0.11 1.74 8.12 -51.93 -0.42 1.32 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -28.78 368.45 -8.38 -37.16 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.20 Total: 5.87 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.10 Total: -2.61 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.60 Total: -45.66 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.29 Total: -13.24 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.78 -8.38 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.884 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds