Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 N 1.46500 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99537 * 264.75230 * 4 3 2 6 6 H 1.08001 * 119.99294 * 146.16625 * 5 4 3 7 7 C 1.38943 * 120.00393 * 326.16062 * 5 4 3 8 8 N 1.31416 * 119.99422 * 337.69239 * 7 5 4 9 9 Si 1.86792 * 120.00223 * 157.68866 * 7 5 4 10 10 H 1.48493 * 109.47296 * 60.00097 * 9 7 5 11 11 H 1.48501 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47088 * 300.00017 * 9 7 5 13 13 C 1.34771 * 120.00185 * 84.74620 * 4 3 2 14 14 O 1.21289 * 119.99988 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00046 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47232 * 179.97438 * 15 13 4 17 17 C 1.50700 * 109.47232 * 179.97438 * 16 15 13 18 18 N 1.30931 * 126.40281 * 90.29703 * 17 16 15 19 19 C 1.35398 * 105.57768 * 180.08505 * 18 17 16 20 20 C 1.47728 * 126.44853 * 179.90253 * 19 18 17 21 21 C 1.34857 * 125.27262 * 179.72880 * 20 19 18 22 22 C 1.37820 * 114.72367 * 179.97438 * 21 20 19 23 23 C 1.33722 * 115.07453 * 0.02562 * 22 21 20 24 24 S 1.75863 * 109.74480 * 359.97438 * 23 22 21 25 25 N 1.31040 * 107.10150 * 359.64308 * 19 18 17 26 26 O 1.21291 * 110.04143 * 0.22470 * 25 19 18 27 27 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46924 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.47085 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.46682 * 240.00326 * 2 1 3 31 31 H 1.09000 * 109.47085 * 120.00226 * 2 1 3 32 32 H 1.08992 * 109.46831 * 60.00279 * 3 2 1 33 33 H 1.09000 * 109.47307 * 300.00090 * 3 2 1 34 34 H 0.97009 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47075 * 59.99455 * 15 13 4 36 36 H 1.08998 * 109.47475 * 300.00156 * 15 13 4 37 37 H 1.09000 * 109.47169 * 59.99961 * 16 15 13 38 38 H 1.08999 * 109.47693 * 300.00209 * 16 15 13 39 39 H 1.07998 * 122.63827 * 359.97438 * 21 20 19 40 40 H 1.08001 * 122.45932 * 179.97438 * 22 21 20 41 41 H 1.08003 * 125.12658 * 180.26506 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5509 1.1815 6 1 5.1339 1.0395 1.3075 7 6 3.6732 2.3187 2.2174 8 7 2.8018 3.2680 1.9594 9 14 4.2157 2.0017 3.9764 10 1 5.6838 2.1968 4.0845 11 1 3.5217 2.9479 4.8866 12 1 3.8722 0.6079 4.3567 13 6 4.1785 1.3358 -1.1631 14 8 5.3914 1.3353 -1.1636 15 6 3.4245 1.2171 -2.4625 16 6 4.4182 1.1113 -3.6210 17 6 3.6642 0.9919 -4.9203 18 7 3.2798 1.9795 -5.6892 19 6 2.6430 1.4002 -6.7342 20 6 2.0220 2.0970 -7.8793 21 6 1.3972 1.4948 -8.9116 22 6 0.8954 2.3562 -9.8633 23 6 1.1043 3.6542 -9.6193 24 16 1.9828 3.8407 -8.1073 25 7 2.6860 0.1047 -6.5415 26 8 3.2680 -0.1424 -5.5064 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4406 3.8044 2.6825 35 1 2.7981 2.0983 -2.6009 36 1 2.7974 0.3258 -2.4387 37 1 5.0449 0.2302 -3.4828 38 1 5.0449 2.0027 -3.6448 39 1 1.2979 0.4221 -8.9866 40 1 0.3727 2.0082 -10.7420 41 1 0.7782 4.4659 -10.2527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = 63.471642 kcal Electronic energy + Delta-G solvation = -25575.492146 eV Core-core repulsion = 21778.710526 eV Total energy + Delta-G solvation = -3796.781621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.55501 -38.79202 -38.18918 -35.98432 -35.44214 -34.22534 -32.81855 -31.37518 -31.07233 -29.61376 -26.43814 -25.51395 -25.32318 -24.08158 -23.34974 -21.90921 -20.99109 -19.21077 -18.92729 -18.53700 -17.98468 -16.96960 -16.75034 -16.19590 -15.83742 -15.12856 -14.87258 -14.45121 -14.15241 -13.87893 -13.79724 -13.66063 -13.21409 -13.02230 -12.94971 -12.65686 -12.52677 -12.22309 -12.01939 -11.78902 -11.64073 -11.44629 -11.36847 -11.23109 -10.99568 -10.97983 -10.91019 -10.64429 -10.38709 -10.30251 -10.23135 -9.95117 -8.97347 -8.85864 -8.80784 -8.49810 -7.53823 -6.36891 -3.98200 0.21797 1.16135 1.20281 1.65764 2.04088 2.69870 2.76800 3.17021 3.24029 3.27281 3.34022 3.82196 4.00917 4.13093 4.67216 4.71712 4.86170 4.99072 5.08551 5.20451 5.22673 5.29788 5.41238 5.54006 5.64243 5.65966 5.73286 5.79751 5.83974 5.93829 6.03954 6.04098 6.13573 6.17640 6.26813 6.36506 6.44895 6.58316 6.89046 7.25496 7.56561 8.05537 8.18875 8.45029 9.13041 9.36581 9.94039 10.66564 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002391 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.279145 B =11710.170720 C =11746.061128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.099 3.901 4 N -0.436 5.436 5 C -0.309 4.309 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.867 5.867 9 Si 0.918 3.082 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.459 3.541 14 O -0.583 6.583 15 C -0.132 4.132 16 C -0.012 4.012 17 C 0.209 3.791 18 N -0.479 5.479 19 C 0.234 3.766 20 C -0.128 4.128 21 C -0.095 4.095 22 C -0.139 4.139 23 C -0.214 4.214 24 S 0.191 5.809 25 N -0.374 5.374 26 O 0.082 5.918 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -1.861 -18.028 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.025 4.025 4 N -0.153 5.153 5 C -0.437 4.437 6 H 0.111 0.889 7 C -0.168 4.168 8 N -0.505 5.505 9 Si 0.744 3.256 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.247 3.753 14 O -0.468 6.468 15 C -0.174 4.174 16 C -0.051 4.051 17 C -0.011 4.011 18 N -0.212 5.212 19 C -0.037 4.037 20 C -0.247 4.247 21 C -0.130 4.130 22 C -0.170 4.170 23 C -0.351 4.351 24 S 0.456 5.544 25 N -0.082 5.082 26 O 0.021 5.979 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.279 -0.595 -17.725 18.814 hybrid contribution -0.530 -1.297 0.116 1.406 sum -6.810 -1.892 -17.608 18.974 Atomic orbital electron populations 1.21678 0.96344 1.00719 1.01567 1.21977 0.94924 0.99252 1.01727 1.21711 0.81951 0.94567 1.04305 1.43484 1.04672 1.62336 1.04853 1.19424 1.06880 1.28662 0.88715 0.88891 1.25333 0.97254 0.93653 1.00548 1.69918 1.30807 1.16722 1.33070 0.86135 0.79161 0.78296 0.81984 1.19695 1.21000 1.19878 1.19951 0.87918 0.82986 0.84468 1.90535 1.13852 1.55645 1.86755 1.21641 0.98482 1.03967 0.93284 1.20123 0.95922 1.07243 0.81854 1.29085 0.94827 0.79340 0.97891 1.72133 1.15707 1.29832 1.03494 1.22712 0.99363 0.86748 0.94865 1.21313 1.08982 0.97430 0.96954 1.20344 0.98102 1.01880 0.92699 1.20019 1.03644 0.92063 1.01248 1.26076 1.06283 1.00990 1.01760 1.84596 1.52471 1.00549 1.16767 1.74994 1.15372 1.16433 1.01386 1.85295 1.51969 1.35176 1.25424 0.93411 0.92676 0.93254 0.93194 0.91603 0.86711 0.93427 0.92114 0.89275 0.89682 0.87136 0.86254 0.83570 0.83605 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.43 6.17 -26.73 -0.16 -2.60 16 3 C 0.10 2.05 4.72 -4.04 -0.02 2.04 16 4 N -0.44 -10.50 2.56 -114.81 -0.29 -10.79 16 5 C -0.31 -8.25 8.98 -14.93 -0.13 -8.38 16 6 H 0.09 2.60 7.70 -52.49 -0.40 2.19 16 7 C 0.04 0.93 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -22.68 11.33 55.50 0.63 -22.05 16 9 Si 0.92 20.06 29.61 -169.99 -5.03 15.02 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 13 C 0.46 10.40 7.59 -10.99 -0.08 10.32 16 14 O -0.58 -15.03 15.80 5.55 0.09 -14.94 16 15 C -0.13 -2.24 4.29 -27.89 -0.12 -2.36 16 16 C -0.01 -0.18 5.13 -27.89 -0.14 -0.32 16 17 C 0.21 3.07 7.74 -12.97 -0.10 2.97 16 18 N -0.48 -7.55 11.58 -9.88 -0.11 -7.66 16 19 C 0.23 3.52 8.02 -156.04 -1.25 2.26 16 20 C -0.13 -1.63 6.44 -36.91 -0.24 -1.86 16 21 C -0.10 -1.00 10.05 -40.93 -0.41 -1.41 16 22 C -0.14 -1.14 10.16 -41.32 -0.42 -1.56 16 23 C -0.21 -1.68 11.23 29.15 0.33 -1.35 16 24 S 0.19 2.02 23.32 -107.50 -2.51 -0.48 16 25 N -0.37 -5.66 12.16 30.99 0.38 -5.28 16 26 O 0.08 1.20 11.29 17.99 0.20 1.40 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.81 6.60 -51.93 -0.34 0.47 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.12 2.67 5.34 -51.93 -0.28 2.39 16 33 H 0.05 0.92 6.66 -51.93 -0.35 0.57 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 35 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 36 H 0.08 1.29 6.54 -51.93 -0.34 0.95 16 37 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 38 H 0.12 1.83 8.10 -51.93 -0.42 1.41 16 39 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -30.63 365.81 -8.64 -39.27 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.03 Total: 3.13 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.47 Total: -3.13 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.60 Total: -45.78 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.29 Total: -13.54 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.63 -8.64 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.744 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds