Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 N 1.46500 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99537 * 264.75230 * 4 3 2 6 6 H 1.08001 * 119.99294 * 146.16625 * 5 4 3 7 7 C 1.38943 * 120.00393 * 326.16062 * 5 4 3 8 8 N 1.31416 * 119.99422 * 337.69239 * 7 5 4 9 9 Si 1.86792 * 120.00223 * 157.68866 * 7 5 4 10 10 H 1.48493 * 109.47296 * 60.00097 * 9 7 5 11 11 H 1.48501 * 109.47057 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47088 * 300.00017 * 9 7 5 13 13 C 1.34771 * 120.00185 * 84.74620 * 4 3 2 14 14 O 1.21289 * 119.99988 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00046 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47232 * 179.97438 * 15 13 4 17 17 C 1.50700 * 109.47232 * 179.97438 * 16 15 13 18 18 N 1.30931 * 126.40281 * 90.29703 * 17 16 15 19 19 C 1.35398 * 105.57768 * 180.08505 * 18 17 16 20 20 C 1.47728 * 126.44853 * 179.90253 * 19 18 17 21 21 C 1.34857 * 125.27262 * 179.72880 * 20 19 18 22 22 C 1.37820 * 114.72367 * 179.97438 * 21 20 19 23 23 C 1.33722 * 115.07453 * 0.02562 * 22 21 20 24 24 S 1.75863 * 109.74480 * 359.97438 * 23 22 21 25 25 N 1.31040 * 107.10150 * 359.64308 * 19 18 17 26 26 O 1.21291 * 110.04143 * 0.22470 * 25 19 18 27 27 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46924 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.47085 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.46682 * 240.00326 * 2 1 3 31 31 H 1.09000 * 109.47085 * 120.00226 * 2 1 3 32 32 H 1.08992 * 109.46831 * 60.00279 * 3 2 1 33 33 H 1.09000 * 109.47307 * 300.00090 * 3 2 1 34 34 H 0.97009 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47075 * 59.99455 * 15 13 4 36 36 H 1.08998 * 109.47475 * 300.00156 * 15 13 4 37 37 H 1.09000 * 109.47169 * 59.99961 * 16 15 13 38 38 H 1.08999 * 109.47693 * 300.00209 * 16 15 13 39 39 H 1.07998 * 122.63827 * 359.97438 * 21 20 19 40 40 H 1.08001 * 122.45932 * 179.97438 * 22 21 20 41 41 H 1.08003 * 125.12658 * 180.26506 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5509 1.1815 6 1 5.1339 1.0395 1.3075 7 6 3.6732 2.3187 2.2174 8 7 2.8018 3.2680 1.9594 9 14 4.2157 2.0017 3.9764 10 1 5.6838 2.1968 4.0845 11 1 3.5217 2.9479 4.8866 12 1 3.8722 0.6079 4.3567 13 6 4.1785 1.3358 -1.1631 14 8 5.3914 1.3353 -1.1636 15 6 3.4245 1.2171 -2.4625 16 6 4.4182 1.1113 -3.6210 17 6 3.6642 0.9919 -4.9203 18 7 3.2798 1.9795 -5.6892 19 6 2.6430 1.4002 -6.7342 20 6 2.0220 2.0970 -7.8793 21 6 1.3972 1.4948 -8.9116 22 6 0.8954 2.3562 -9.8633 23 6 1.1043 3.6542 -9.6193 24 16 1.9828 3.8407 -8.1073 25 7 2.6860 0.1047 -6.5415 26 8 3.2680 -0.1424 -5.5064 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 2.4406 3.8044 2.6825 35 1 2.7981 2.0983 -2.6009 36 1 2.7974 0.3258 -2.4387 37 1 5.0449 0.2302 -3.4828 38 1 5.0449 2.0027 -3.6448 39 1 1.2979 0.4221 -8.9866 40 1 0.3727 2.0082 -10.7420 41 1 0.7782 4.4659 -10.2527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = 45.423089 kcal Electronic energy + Delta-G solvation = -25576.274790 eV Core-core repulsion = 21778.710526 eV Total energy + Delta-G solvation = -3797.564265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.68674 -40.56181 -38.94532 -37.31293 -36.98170 -35.52032 -34.48116 -33.01138 -32.41866 -30.50490 -28.09523 -26.95762 -26.21143 -25.64993 -24.48036 -22.96319 -22.43018 -20.63562 -19.98251 -19.53130 -19.17750 -18.78512 -17.97590 -17.64186 -16.88696 -16.62409 -16.43801 -16.08396 -15.40251 -15.34268 -14.96971 -14.61976 -14.48374 -14.33046 -14.02406 -13.70973 -13.64292 -13.49948 -13.35448 -13.21091 -13.10591 -12.93743 -12.86118 -12.57183 -12.37322 -12.29321 -12.15288 -12.04964 -11.96424 -11.77830 -11.47887 -11.40586 -10.85082 -10.36398 -9.68097 -9.57635 -9.43841 -8.32024 -6.00985 -0.63813 0.10466 0.37829 0.94709 1.12550 1.40581 1.44126 1.53196 1.59696 1.83805 2.04361 2.28636 2.34770 2.90659 3.02860 3.13397 3.69513 3.86958 3.98699 4.08417 4.13823 4.17158 4.32604 4.37343 4.40769 4.52439 4.57751 4.61027 4.68271 4.79073 4.88104 4.93329 5.00915 5.02096 5.15546 5.19750 5.30594 5.36473 5.42462 5.50964 5.63142 6.22787 6.53763 6.93129 7.19547 7.50142 8.07302 8.69698 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002391 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.279145 B =11710.170720 C =11746.061128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.451 5.451 5 C -0.340 4.340 6 H 0.068 0.932 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.978 3.022 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.265 1.265 13 C 0.450 3.550 14 O -0.623 6.623 15 C -0.116 4.116 16 C -0.002 4.002 17 C 0.215 3.785 18 N -0.497 5.497 19 C 0.233 3.767 20 C -0.173 4.173 21 C -0.082 4.082 22 C -0.145 4.145 23 C -0.185 4.185 24 S 0.160 5.840 25 N -0.386 5.386 26 O 0.082 5.918 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.273 0.727 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.180 0.820 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -2.103 -19.795 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.023 4.023 4 N -0.169 5.169 5 C -0.468 4.468 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.525 5.525 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.190 1.190 13 C 0.240 3.760 14 O -0.510 6.510 15 C -0.158 4.158 16 C -0.041 4.041 17 C -0.005 4.005 18 N -0.231 5.231 19 C -0.037 4.037 20 C -0.292 4.292 21 C -0.118 4.118 22 C -0.175 4.175 23 C -0.322 4.322 24 S 0.425 5.575 25 N -0.095 5.095 26 O 0.023 5.977 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.168 0.832 40 H 0.197 0.803 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.223 -0.848 -19.490 21.170 hybrid contribution 0.037 -1.162 0.526 1.276 sum -8.186 -2.010 -18.963 20.752 Atomic orbital electron populations 1.21635 0.93688 1.02333 1.01989 1.21881 0.97116 0.96615 1.01464 1.21769 0.80119 0.96783 1.03650 1.43756 1.06009 1.62433 1.04709 1.19376 1.06979 1.29696 0.90751 0.91393 1.26030 0.97195 0.93032 1.03674 1.69990 1.31322 1.16961 1.34181 0.85233 0.78359 0.78642 0.77601 1.20200 1.19910 1.18989 1.20797 0.87820 0.81543 0.85888 1.90499 1.15767 1.57076 1.87627 1.21479 0.98391 1.05199 0.90682 1.19948 0.95364 1.07514 0.81257 1.28854 0.94632 0.79424 0.97634 1.72135 1.16335 1.30410 1.04176 1.23126 0.98710 0.86731 0.95138 1.21480 1.11675 0.98387 0.97628 1.20648 0.96412 1.02533 0.92200 1.20336 1.03660 0.91718 1.01737 1.26509 1.03768 1.01994 0.99938 1.84669 1.53789 0.99857 1.19188 1.74964 1.16224 1.16662 1.01692 1.85274 1.52045 1.34926 1.25441 0.91193 0.93173 0.91950 0.91903 0.93420 0.89177 0.92083 0.91732 0.88815 0.87355 0.86044 0.87010 0.83197 0.80285 0.77692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.13 -4.47 6.17 30.60 0.19 -4.28 16 3 C 0.10 4.17 4.72 86.38 0.41 4.57 16 4 N -0.45 -22.22 2.56 -635.55 -1.63 -23.85 16 5 C -0.34 -18.73 8.98 84.04 0.75 -17.98 16 6 H 0.07 3.99 7.70 -2.91 -0.02 3.97 16 7 C 0.00 0.17 4.92 84.92 0.42 0.59 16 8 N -0.89 -46.93 11.33 21.66 0.25 -46.69 16 9 Si 0.98 41.58 29.61 68.60 2.03 43.61 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 13 C 0.45 20.77 7.59 87.66 0.67 21.44 16 14 O -0.62 -33.11 15.80 -3.06 -0.05 -33.16 16 15 C -0.12 -3.89 4.29 29.85 0.13 -3.76 16 16 C 0.00 -0.05 5.13 29.85 0.15 0.11 16 17 C 0.21 6.23 7.74 88.35 0.68 6.92 16 18 N -0.50 -15.64 11.58 -302.26 -3.50 -19.14 16 19 C 0.23 6.95 8.02 136.95 1.10 8.04 16 20 C -0.17 -4.27 6.44 24.00 0.15 -4.11 16 21 C -0.08 -1.57 10.05 21.39 0.22 -1.36 16 22 C -0.15 -1.88 10.16 21.14 0.21 -1.67 16 23 C -0.19 -2.30 11.23 66.79 0.75 -1.55 16 24 S 0.16 3.22 23.32 -56.49 -1.32 1.91 16 25 N -0.39 -11.50 12.16 -58.77 -0.71 -12.22 16 26 O 0.08 2.35 11.29 74.44 0.84 3.19 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.94 6.60 -2.38 -0.02 1.92 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 4.24 5.34 -2.39 -0.01 4.23 16 33 H 0.06 2.32 6.66 -2.39 -0.02 2.30 16 34 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 35 H 0.09 3.07 7.41 -2.39 -0.02 3.06 16 36 H 0.11 3.11 6.54 -2.39 -0.02 3.10 16 37 H 0.12 3.31 8.10 -2.39 -0.02 3.29 16 38 H 0.11 3.50 8.10 -2.39 -0.02 3.48 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -68.54 365.81 3.52 -65.02 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.06 Total: 17.32 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.55 Total: 4.00 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.60 Total: -101.89 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: 0.79 Total: -29.97 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.91 kcal Total: -68.54 3.52 -65.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.447 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds