Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46983 * 2 1 4 4 N 1.46497 * 109.47141 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00094 * 265.56091 * 4 3 2 6 6 H 1.08004 * 119.99901 * 145.67551 * 5 4 3 7 7 C 1.38943 * 120.00472 * 325.67467 * 5 4 3 8 8 N 1.31418 * 119.99686 * 338.40580 * 7 5 4 9 9 Si 1.86797 * 120.00298 * 158.40274 * 7 5 4 10 10 H 1.48495 * 109.47222 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47183 * 120.00174 * 9 7 5 12 12 H 1.48504 * 109.47444 * 239.99986 * 9 7 5 13 13 C 1.34778 * 119.99770 * 85.56329 * 4 3 2 14 14 O 1.21297 * 120.00281 * 0.02562 * 13 4 3 15 15 C 1.50701 * 120.00059 * 179.97438 * 13 4 3 16 16 C 1.52998 * 109.47468 * 179.97438 * 15 13 4 17 17 N 1.46497 * 109.47180 * 180.02562 * 16 15 13 18 18 C 1.35800 * 119.81347 * 270.02426 * 17 16 15 19 19 N 1.29991 * 121.86115 * 179.42820 * 18 17 16 20 20 C 1.35020 * 121.70180 * 0.86741 * 19 18 17 21 21 S 1.75871 * 130.81919 * 179.10519 * 20 19 18 22 22 C 1.75340 * 92.15888 * 179.97438 * 21 20 19 23 23 C 1.32025 * 111.25682 * 359.97438 * 22 21 20 24 24 C 1.39194 * 119.55844 * 359.39615 * 20 19 18 25 25 C 1.34742 * 119.81412 * 90.00592 * 17 16 15 26 26 O 1.21893 * 120.64631 * 0.04498 * 25 17 16 27 27 H 1.09005 * 109.47214 * 300.00008 * 1 2 3 28 28 H 1.08997 * 109.47413 * 60.00207 * 1 2 3 29 29 H 1.09006 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46726 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46709 * 119.99547 * 2 1 3 32 32 H 1.08997 * 109.47460 * 59.99794 * 3 2 1 33 33 H 1.09006 * 109.47412 * 299.99880 * 3 2 1 34 34 H 0.97005 * 119.99813 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46807 * 60.00306 * 15 13 4 36 36 H 1.08996 * 109.47187 * 300.00841 * 15 13 4 37 37 H 1.09007 * 109.46629 * 60.00475 * 16 15 13 38 38 H 1.08996 * 109.47222 * 300.01177 * 16 15 13 39 39 H 1.08003 * 119.06787 * 359.97438 * 18 17 16 40 40 H 1.08007 * 124.37435 * 179.97438 * 22 21 20 41 41 H 1.07995 * 122.60430 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5346 1.1846 6 1 5.1288 1.0151 1.3070 7 6 3.6763 2.2962 2.2270 8 7 2.8016 3.2450 1.9786 9 14 4.2291 1.9715 3.9815 10 1 5.2128 0.8593 3.9928 11 1 4.8605 3.1958 4.5361 12 1 3.0537 1.6019 4.8105 13 6 4.1793 1.3521 -1.1628 14 8 3.5732 1.2711 -2.2104 15 6 5.6863 1.3527 -1.1623 16 6 6.1969 1.2401 -2.6002 17 7 7.6619 1.2401 -2.5995 18 6 8.3371 2.4148 -2.6907 19 7 9.6361 2.4620 -2.6828 20 6 10.3863 1.3424 -2.6006 21 16 12.1316 1.1260 -2.5919 22 6 11.9816 -0.6157 -2.4575 23 6 10.7148 -0.9858 -2.4228 24 6 9.7611 0.1021 -2.5093 25 6 8.3317 0.0746 -2.5082 26 8 7.7307 -0.9827 -2.4266 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.4433 3.7770 2.7063 35 1 6.0497 0.5054 -0.5807 36 1 6.0491 2.2799 -0.7190 37 1 5.8334 2.0872 -3.1821 38 1 5.8340 0.3127 -3.0431 39 1 7.7789 3.3366 -2.7631 40 1 12.8176 -1.2979 -2.4093 41 1 10.4125 -2.0194 -2.3416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = -14.519557 kcal Electronic energy + Delta-G solvation = -26216.202515 eV Core-core repulsion = 22416.038942 eV Total energy + Delta-G solvation = -3800.163573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70601 -38.77866 -37.63043 -36.94489 -35.31015 -34.26595 -32.89459 -31.48039 -30.59523 -29.55996 -26.41588 -25.56401 -24.74415 -24.09090 -22.93000 -21.22746 -20.61704 -19.20303 -19.16406 -17.88035 -17.28668 -16.63326 -16.25781 -15.91751 -15.53281 -14.96263 -14.91296 -14.47168 -14.39874 -14.09497 -13.87070 -13.65167 -13.43105 -13.06953 -13.05989 -12.93912 -12.50168 -12.27536 -11.81188 -11.56666 -11.44923 -11.32920 -11.30502 -11.02607 -10.79609 -10.71277 -10.38960 -10.32938 -10.26395 -10.09373 -9.97932 -9.78392 -9.18804 -8.72824 -8.57781 -8.19023 -7.63036 -6.48730 -4.16524 0.14934 0.98022 1.59378 1.69118 2.00683 2.43120 3.03012 3.16023 3.19831 3.47345 3.77422 4.00107 4.01814 4.32583 4.55208 4.70188 4.84918 4.91820 4.96183 5.23655 5.33775 5.46869 5.72016 5.75581 5.77546 5.82810 5.95394 5.96825 6.09288 6.17987 6.28395 6.42801 6.48891 6.52872 6.54069 6.65599 6.79860 7.06980 7.28138 7.42895 7.52714 7.79361 7.81939 8.26582 8.95889 9.38895 9.82442 10.51805 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003054 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.245420 B = 9164.726305 C =10048.408325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.113 3.887 4 N -0.432 5.432 5 C -0.343 4.343 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.854 5.854 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.471 3.529 14 O -0.609 6.609 15 C -0.133 4.133 16 C 0.109 3.891 17 N -0.527 5.527 18 C 0.397 3.603 19 N -0.516 5.516 20 C 0.085 3.915 21 S 0.178 5.822 22 C -0.235 4.235 23 C -0.061 4.061 24 C -0.241 4.241 25 C 0.555 3.445 26 O -0.517 6.517 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.214 0.786 40 H 0.175 0.825 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -1.723 -6.121 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.010 4.010 4 N -0.149 5.149 5 C -0.471 4.471 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.491 5.491 9 Si 0.737 3.263 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.260 3.740 14 O -0.496 6.496 15 C -0.174 4.174 16 C -0.013 4.013 17 N -0.246 5.246 18 C 0.108 3.892 19 N -0.239 5.239 20 C -0.148 4.148 21 S 0.440 5.560 22 C -0.370 4.370 23 C -0.090 4.090 24 C -0.258 4.258 25 C 0.349 3.651 26 O -0.392 6.392 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.230 0.770 40 H 0.192 0.808 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.919 -0.759 -6.556 15.404 hybrid contribution -1.294 -1.709 1.314 2.514 sum 12.625 -2.468 -5.242 13.891 Atomic orbital electron populations 1.21653 0.96539 1.00472 1.01378 1.21832 0.94764 0.99406 1.01348 1.21492 0.81154 0.94639 1.03724 1.43465 1.04954 1.61733 1.04723 1.19474 1.07743 1.29755 0.90086 0.89264 1.25314 0.96829 0.93479 1.00403 1.69932 1.29746 1.16431 1.32956 0.86124 0.78927 0.78679 0.82532 1.19149 1.20601 1.20322 1.19971 0.88403 0.81659 0.84013 1.90541 1.70347 1.57160 1.31579 1.21644 0.96061 1.04506 0.95170 1.21924 0.73511 1.06568 0.99272 1.46849 1.11106 1.07494 1.59144 1.25101 0.88145 0.90337 0.85632 1.67960 1.03800 1.27343 1.24774 1.23993 0.99790 0.91548 0.99464 1.84018 0.96957 1.01490 1.73502 1.25119 1.00714 0.98397 1.12739 1.20494 0.90475 0.99406 0.98625 1.20848 0.93943 0.94106 1.16950 1.16667 0.86879 0.83548 0.78022 1.90935 1.70165 1.28711 1.49422 0.93010 0.93111 0.93616 0.92844 0.92415 0.87404 0.92873 0.91926 0.89631 0.88978 0.87788 0.87493 0.76979 0.80780 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.75 6.23 -26.73 -0.17 -2.92 16 3 C 0.11 2.64 4.92 -4.05 -0.02 2.62 16 4 N -0.43 -10.46 2.55 -114.82 -0.29 -10.75 16 5 C -0.34 -8.37 8.70 -14.94 -0.13 -8.50 16 6 H 0.09 2.13 6.98 -52.48 -0.37 1.76 16 7 C 0.05 1.12 4.94 -17.47 -0.09 1.03 16 8 N -0.85 -21.54 11.31 55.50 0.63 -20.92 16 9 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.47 10.78 7.61 -10.98 -0.08 10.69 16 14 O -0.61 -14.91 15.64 5.54 0.09 -14.82 16 15 C -0.13 -2.46 4.68 -27.88 -0.13 -2.60 16 16 C 0.11 1.69 4.65 -4.04 -0.02 1.67 16 17 N -0.53 -7.55 2.59 -120.42 -0.31 -7.86 16 18 C 0.40 4.63 11.48 -90.10 -1.03 3.60 16 19 N -0.52 -6.69 10.42 -12.59 -0.13 -6.83 16 20 C 0.08 1.14 7.70 -15.79 -0.12 1.01 16 21 S 0.18 1.80 23.24 -107.50 -2.50 -0.69 16 22 C -0.24 -2.23 11.04 28.81 0.32 -1.91 16 23 C -0.06 -0.74 10.31 -38.85 -0.40 -1.14 16 24 C -0.24 -3.53 6.08 -105.07 -0.64 -4.17 16 25 C 0.55 9.23 7.51 -14.45 -0.11 9.12 16 26 O -0.52 -10.20 16.68 5.02 0.08 -10.12 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.65 5.33 -51.93 -0.28 2.38 16 33 H 0.05 1.28 7.56 -51.93 -0.39 0.88 16 34 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.09 1.68 7.65 -51.93 -0.40 1.29 16 36 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 37 H 0.10 1.39 7.97 -51.93 -0.41 0.98 16 38 H 0.11 1.89 7.39 -51.93 -0.38 1.50 16 39 H 0.21 1.58 8.02 -52.48 -0.42 1.16 16 40 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -30.92 363.23 -9.41 -40.33 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.17 Total: 5.80 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.25 Total: 6.49 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.11 Total: -46.35 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.17 Total: -24.94 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.50 Total: -0.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.92 -9.41 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.812 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds