Wall clock time and date at job start Tue Mar 31 2020 18:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46983 * 2 1 4 4 N 1.46497 * 109.47141 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00094 * 265.56091 * 4 3 2 6 6 H 1.08004 * 119.99901 * 145.67551 * 5 4 3 7 7 C 1.38943 * 120.00472 * 325.67467 * 5 4 3 8 8 N 1.31418 * 119.99686 * 338.40580 * 7 5 4 9 9 Si 1.86797 * 120.00298 * 158.40274 * 7 5 4 10 10 H 1.48495 * 109.47222 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47183 * 120.00174 * 9 7 5 12 12 H 1.48504 * 109.47444 * 239.99986 * 9 7 5 13 13 C 1.34778 * 119.99770 * 85.56329 * 4 3 2 14 14 O 1.21297 * 120.00281 * 0.02562 * 13 4 3 15 15 C 1.50701 * 120.00059 * 179.97438 * 13 4 3 16 16 C 1.52998 * 109.47468 * 179.97438 * 15 13 4 17 17 N 1.46497 * 109.47180 * 180.02562 * 16 15 13 18 18 C 1.35800 * 119.81347 * 270.02426 * 17 16 15 19 19 N 1.29991 * 121.86115 * 179.42820 * 18 17 16 20 20 C 1.35020 * 121.70180 * 0.86741 * 19 18 17 21 21 S 1.75871 * 130.81919 * 179.10519 * 20 19 18 22 22 C 1.75340 * 92.15888 * 179.97438 * 21 20 19 23 23 C 1.32025 * 111.25682 * 359.97438 * 22 21 20 24 24 C 1.39194 * 119.55844 * 359.39615 * 20 19 18 25 25 C 1.34742 * 119.81412 * 90.00592 * 17 16 15 26 26 O 1.21893 * 120.64631 * 0.04498 * 25 17 16 27 27 H 1.09005 * 109.47214 * 300.00008 * 1 2 3 28 28 H 1.08997 * 109.47413 * 60.00207 * 1 2 3 29 29 H 1.09006 * 109.47062 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46726 * 239.99841 * 2 1 3 31 31 H 1.08999 * 109.46709 * 119.99547 * 2 1 3 32 32 H 1.08997 * 109.47460 * 59.99794 * 3 2 1 33 33 H 1.09006 * 109.47412 * 299.99880 * 3 2 1 34 34 H 0.97005 * 119.99813 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46807 * 60.00306 * 15 13 4 36 36 H 1.08996 * 109.47187 * 300.00841 * 15 13 4 37 37 H 1.09007 * 109.46629 * 60.00475 * 16 15 13 38 38 H 1.08996 * 109.47222 * 300.01177 * 16 15 13 39 39 H 1.08003 * 119.06787 * 359.97438 * 18 17 16 40 40 H 1.08007 * 124.37435 * 179.97438 * 22 21 20 41 41 H 1.07995 * 122.60430 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1899 1.5346 1.1846 6 1 5.1288 1.0151 1.3070 7 6 3.6763 2.2962 2.2270 8 7 2.8016 3.2450 1.9786 9 14 4.2291 1.9715 3.9815 10 1 5.2128 0.8593 3.9928 11 1 4.8605 3.1958 4.5361 12 1 3.0537 1.6019 4.8105 13 6 4.1793 1.3521 -1.1628 14 8 3.5732 1.2711 -2.2104 15 6 5.6863 1.3527 -1.1623 16 6 6.1969 1.2401 -2.6002 17 7 7.6619 1.2401 -2.5995 18 6 8.3371 2.4148 -2.6907 19 7 9.6361 2.4620 -2.6828 20 6 10.3863 1.3424 -2.6006 21 16 12.1316 1.1260 -2.5919 22 6 11.9816 -0.6157 -2.4575 23 6 10.7148 -0.9858 -2.4228 24 6 9.7611 0.1021 -2.5093 25 6 8.3317 0.0746 -2.5082 26 8 7.7307 -0.9827 -2.4266 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.4433 3.7770 2.7063 35 1 6.0497 0.5054 -0.5807 36 1 6.0491 2.2799 -0.7190 37 1 5.8334 2.0872 -3.1821 38 1 5.8340 0.3127 -3.0431 39 1 7.7789 3.3366 -2.7631 40 1 12.8176 -1.2979 -2.4093 41 1 10.4125 -2.0194 -2.3416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:31 Heat of formation + Delta-G solvation = -31.139911 kcal Electronic energy + Delta-G solvation = -26216.923228 eV Core-core repulsion = 22416.038942 eV Total energy + Delta-G solvation = -3800.884285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81887 -40.56535 -38.82300 -38.02458 -37.06844 -35.43357 -34.57123 -33.29653 -32.01457 -30.55288 -27.92985 -27.12169 -26.13695 -25.29709 -24.19520 -22.45964 -22.01575 -21.00330 -20.21099 -19.01433 -18.85334 -18.17673 -17.33350 -17.19254 -16.97159 -16.58824 -16.20407 -16.11803 -15.95911 -15.40290 -15.02971 -14.83442 -14.64662 -14.54506 -14.43776 -14.02549 -13.81332 -13.77663 -13.34823 -13.21081 -13.04897 -12.83205 -12.62341 -12.42130 -12.27665 -12.19814 -12.05238 -11.98944 -11.54431 -11.44720 -11.23115 -11.09592 -11.00549 -10.40602 -9.65407 -9.51766 -9.16152 -8.34436 -6.08419 -0.81278 0.09957 0.49214 0.83798 1.09824 1.28931 1.37008 1.46717 1.57285 1.97107 2.27811 2.37323 2.91614 3.05027 3.09187 3.38152 3.69899 3.83467 3.89620 3.92287 4.10930 4.14573 4.25083 4.34186 4.50010 4.58563 4.60862 4.66842 4.82235 4.87901 4.93974 4.96554 5.07934 5.10021 5.18380 5.20924 5.35035 5.41429 5.42336 5.56636 5.97014 6.38802 6.49788 6.61200 7.07983 7.53517 7.97290 8.67104 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003054 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.245420 B = 9164.726305 C =10048.408325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.114 3.886 4 N -0.447 5.447 5 C -0.358 4.358 6 H 0.090 0.910 7 C 0.013 3.987 8 N -0.882 5.882 9 Si 0.974 3.026 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.461 3.539 14 O -0.630 6.630 15 C -0.118 4.118 16 C 0.124 3.876 17 N -0.526 5.526 18 C 0.397 3.603 19 N -0.519 5.519 20 C 0.062 3.938 21 S 0.232 5.768 22 C -0.210 4.210 23 C -0.091 4.091 24 C -0.266 4.266 25 C 0.542 3.458 26 O -0.565 6.565 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.274 0.726 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.213 0.787 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.881 -1.121 -5.627 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C -0.010 4.010 4 N -0.163 5.163 5 C -0.485 4.485 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.518 5.518 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.250 3.750 14 O -0.519 6.519 15 C -0.159 4.159 16 C 0.002 3.998 17 N -0.244 5.244 18 C 0.109 3.891 19 N -0.241 5.241 20 C -0.171 4.171 21 S 0.495 5.505 22 C -0.345 4.345 23 C -0.120 4.120 24 C -0.284 4.284 25 C 0.339 3.661 26 O -0.445 6.445 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.149 0.851 38 H 0.100 0.900 39 H 0.272 0.728 40 H 0.230 0.770 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.919 -0.123 -6.069 17.037 hybrid contribution -1.788 -1.853 1.116 2.806 sum 14.131 -1.976 -4.953 15.104 Atomic orbital electron populations 1.21605 0.93517 1.02286 1.01878 1.21738 0.97402 0.97164 1.00235 1.21458 0.81230 0.96101 1.02172 1.43722 1.05402 1.61990 1.05235 1.19659 1.08143 1.30178 0.90543 0.89234 1.26023 0.96768 0.92908 1.03466 1.70005 1.30645 1.17063 1.34123 0.85168 0.78454 0.78487 0.78056 1.19025 1.20107 1.20089 1.20643 0.90154 0.80812 0.83395 1.90512 1.71299 1.57901 1.32151 1.21499 0.92968 1.04340 0.97100 1.21662 0.74433 1.06394 0.97334 1.46754 1.10403 1.07969 1.59274 1.25978 0.88163 0.90476 0.84480 1.68043 1.04206 1.27151 1.24716 1.24472 1.01892 0.91179 0.99598 1.83880 0.93717 1.01226 1.71694 1.25605 1.00721 0.98989 1.09143 1.20583 0.91150 0.99121 1.01120 1.21003 0.93204 0.95763 1.18443 1.17139 0.87945 0.83507 0.77557 1.90891 1.71153 1.30394 1.52066 0.92462 0.92659 0.91140 0.94293 0.93020 0.88641 0.94445 0.91567 0.91180 0.87690 0.85136 0.90030 0.72833 0.77000 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.91 71.98 0.71 -3.70 16 2 C -0.13 -5.25 6.23 30.59 0.19 -5.06 16 3 C 0.11 5.43 4.92 86.38 0.42 5.86 16 4 N -0.45 -22.12 2.55 -635.55 -1.62 -23.74 16 5 C -0.36 -17.66 8.70 84.04 0.73 -16.93 16 6 H 0.09 4.33 6.98 -2.91 -0.02 4.30 16 7 C 0.01 0.60 4.94 84.92 0.42 1.02 16 8 N -0.88 -44.57 11.31 21.66 0.24 -44.33 16 9 Si 0.97 38.44 29.60 68.60 2.03 40.47 16 10 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 11 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 12 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.46 21.58 7.61 87.66 0.67 22.25 16 14 O -0.63 -31.63 15.64 -3.08 -0.05 -31.68 16 15 C -0.12 -4.47 4.68 29.85 0.14 -4.33 16 16 C 0.12 3.91 4.65 86.38 0.40 4.31 16 17 N -0.53 -15.08 2.59 -653.06 -1.69 -16.77 16 18 C 0.40 8.68 11.48 180.17 2.07 10.75 16 19 N -0.52 -12.63 10.42 -193.76 -2.02 -14.65 16 20 C 0.06 1.57 7.70 84.43 0.65 2.22 16 21 S 0.23 4.05 23.24 -56.49 -1.31 2.74 16 22 C -0.21 -3.41 11.04 66.90 0.74 -2.67 16 23 C -0.09 -2.15 10.31 23.06 0.24 -1.91 16 24 C -0.27 -7.81 6.08 -20.15 -0.12 -7.93 16 25 C 0.54 18.65 7.51 85.43 0.64 19.29 16 26 O -0.57 -23.68 16.68 -4.97 -0.08 -23.76 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 4.80 5.33 -2.39 -0.01 4.79 16 33 H 0.04 1.85 7.56 -2.38 -0.02 1.84 16 34 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 35 H 0.07 2.87 7.65 -2.38 -0.02 2.85 16 36 H 0.10 3.65 8.10 -2.39 -0.02 3.64 16 37 H 0.13 3.38 7.97 -2.38 -0.02 3.37 16 38 H 0.08 3.03 7.39 -2.39 -0.02 3.01 16 39 H 0.26 3.04 8.02 -2.91 -0.02 3.02 16 40 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.24 363.23 4.46 -64.78 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.06 Total: 23.78 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 7.90 Total: 23.17 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.09 Total: -99.49 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.13 Total: -55.44 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.31 Total: 2.74 kcal Total: -69.24 4.46 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.639 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds