Wall clock time and date at job start Tue Mar 31 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30495 * 125.65062 * 2 1 4 4 C 1.34129 * 109.26047 * 180.02562 * 3 2 1 5 5 S 1.76206 * 125.99193 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.39922 * 336.47531 * 5 4 3 7 7 O 1.42100 * 106.39572 * 203.56122 * 5 4 3 8 8 N 1.65595 * 107.22018 * 90.01877 * 5 4 3 9 9 C 1.36933 * 119.99919 * 262.45402 * 8 5 4 10 10 H 1.08003 * 119.99865 * 129.32964 * 9 8 5 11 11 C 1.38811 * 120.00302 * 309.32530 * 9 8 5 12 12 N 1.31614 * 120.00362 * 154.21505 * 11 9 8 13 13 Si 1.86802 * 119.99797 * 334.22068 * 11 9 8 14 14 H 1.48501 * 109.47449 * 91.92559 * 13 11 9 15 15 H 1.48501 * 109.47288 * 211.92931 * 13 11 9 16 16 H 1.48506 * 109.47087 * 331.92879 * 13 11 9 17 17 C 1.46501 * 119.99866 * 82.45186 * 8 5 4 18 18 C 1.50701 * 109.47305 * 256.05107 * 17 8 5 19 19 C 1.38233 * 120.00165 * 94.15428 * 18 17 8 20 20 C 1.38233 * 120.00183 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00173 * 0.07200 * 20 19 18 22 22 C 1.38232 * 119.99906 * 359.90683 * 21 20 19 23 23 C 1.38237 * 120.00069 * 274.13779 * 18 17 8 24 24 C 1.34661 * 108.01691 * 0.25780 * 4 3 2 25 25 N 1.35040 * 125.65226 * 180.02562 * 2 1 3 26 26 C 1.46505 * 126.39714 * 359.94441 * 25 2 1 27 27 H 1.08999 * 109.46477 * 89.97946 * 1 2 3 28 28 H 1.08998 * 109.46854 * 209.97956 * 1 2 3 29 29 H 1.09003 * 109.47302 * 329.98138 * 1 2 3 30 30 H 0.97002 * 120.00564 * 180.02562 * 12 11 9 31 31 H 1.09009 * 109.46907 * 136.05226 * 17 8 5 32 32 H 1.08992 * 109.47017 * 16.05277 * 17 8 5 33 33 H 1.07999 * 119.99663 * 359.69993 * 19 18 17 34 34 H 1.08000 * 119.99938 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00456 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00332 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.00169 * 359.97438 * 23 18 17 38 38 H 1.08006 * 126.59089 * 179.70580 * 24 4 3 39 39 H 1.09002 * 109.46904 * 90.00051 * 26 25 2 40 40 H 1.09000 * 109.47288 * 209.99921 * 26 25 2 41 41 H 1.08997 * 109.46911 * 330.00175 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6819 -0.0006 5 16 4.9501 1.7575 -0.0002 6 8 4.5048 2.9928 -0.5433 7 8 6.0304 1.0129 -0.5458 8 7 5.3391 2.0552 1.5817 9 6 4.9002 3.2003 2.1908 10 1 4.3970 3.1457 3.1449 11 6 5.1019 4.4314 1.5821 12 7 4.2958 5.4372 1.8482 13 14 6.5176 4.6607 0.3852 14 1 6.0489 4.3798 -0.9956 15 1 7.0122 6.0586 0.4653 16 1 7.6174 3.7258 0.7343 17 6 6.1528 1.0934 2.3294 18 6 5.2703 0.3106 3.2672 19 6 4.7530 -0.9091 2.8730 20 6 3.9439 -1.6274 3.7334 21 6 3.6510 -1.1253 4.9876 22 6 4.1687 0.0942 5.3820 23 6 4.9785 0.8121 4.5219 24 6 3.5926 -0.6642 -0.0067 25 7 2.2941 -1.0973 -0.0005 26 6 1.8426 -2.4910 0.0000 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 4.4365 6.2974 1.4226 31 1 6.9102 1.6272 2.9037 32 1 6.6393 0.4103 1.6332 33 1 4.9773 -1.2988 1.8910 34 1 3.5394 -2.5802 3.4252 35 1 3.0186 -1.6862 5.6597 36 1 3.9402 0.4864 6.3620 37 1 5.3832 1.7648 4.8302 38 1 4.4777 -1.2831 -0.0132 39 1 1.7298 -2.8368 -1.0275 40 1 2.5777 -3.1109 0.5133 41 1 0.8844 -2.5623 0.5146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066101319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:23 Heat of formation + Delta-G solvation = 35.546448 kcal Electronic energy + Delta-G solvation = -28223.226910 eV Core-core repulsion = 24425.234362 eV Total energy + Delta-G solvation = -3797.992548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70474 -38.90051 -35.80982 -35.56901 -34.37115 -33.82189 -32.40745 -31.60841 -30.56602 -30.48881 -27.29245 -26.52036 -26.11833 -23.36539 -22.20308 -21.65001 -20.70262 -19.74654 -18.87390 -17.79432 -16.65193 -16.56188 -15.76084 -15.55830 -15.44156 -15.03319 -14.67682 -14.51713 -14.29784 -13.74452 -13.49739 -13.37598 -13.23785 -13.06462 -12.88516 -12.60897 -12.49531 -12.38521 -12.23954 -12.06697 -11.56418 -11.41151 -11.37900 -10.82774 -10.66677 -10.62386 -10.59457 -10.18203 -9.97503 -9.67890 -9.38659 -9.19652 -8.75800 -8.55514 -8.36119 -8.14798 -7.87141 -6.52297 -4.13388 1.61005 1.78522 1.88409 2.17332 2.92279 3.25282 3.35138 3.46829 3.61536 4.10749 4.37455 4.53929 4.61206 4.74690 4.89119 4.94559 4.97955 5.09945 5.15821 5.17229 5.24524 5.31818 5.36299 5.51273 5.57425 5.64152 5.78606 5.89147 5.90027 6.02078 6.19828 6.30843 6.42134 6.45033 6.45960 6.78260 6.81400 6.85114 6.92756 7.18951 7.39346 7.42350 7.73469 8.24390 8.40941 8.99802 9.12699 10.49819 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.007058 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.795516 B = 3966.091718 C = 5279.613782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.183 3.817 3 N -0.400 5.400 4 C -0.511 4.511 5 S 2.533 3.467 6 O -0.941 6.941 7 O -1.010 7.010 8 N -0.817 5.817 9 C -0.258 4.258 10 H 0.094 0.906 11 C 0.104 3.896 12 N -0.801 5.801 13 Si 0.837 3.163 14 H -0.233 1.233 15 H -0.280 1.280 16 H -0.257 1.257 17 C 0.158 3.842 18 C -0.084 4.084 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.088 4.088 24 C 0.027 3.973 25 N -0.459 5.459 26 C 0.070 3.930 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.283 0.717 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.179 0.821 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 -15.564 3.400 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 N -0.118 5.118 4 C -0.717 4.717 5 S 2.635 3.365 6 O -0.930 6.930 7 O -0.999 6.999 8 N -0.640 5.640 9 C -0.408 4.408 10 H 0.112 0.888 11 C -0.116 4.116 12 N -0.435 5.435 13 Si 0.660 3.340 14 H -0.157 1.157 15 H -0.206 1.206 16 H -0.181 1.181 17 C 0.032 3.968 18 C -0.086 4.086 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.106 4.106 24 C -0.110 4.110 25 N -0.143 5.143 26 C -0.073 4.073 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.196 0.804 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.746 -14.653 2.368 15.309 hybrid contribution -0.024 -1.269 -0.421 1.337 sum -3.770 -15.922 1.947 16.478 Atomic orbital electron populations 1.20115 0.85125 1.03749 1.03060 1.23647 0.95817 0.81706 1.06968 1.70378 0.99984 1.26790 1.14644 1.34799 1.12991 1.06999 1.16903 1.11336 0.73075 0.73592 0.78535 1.93462 1.81846 1.40643 1.77024 1.93339 1.52411 1.74025 1.80100 1.53145 1.55778 1.24135 1.30904 1.18795 1.35610 0.80674 1.05759 0.88829 1.25716 0.95997 0.94899 0.94954 1.69837 1.31613 1.03508 1.38578 0.87465 0.82022 0.79248 0.85218 1.15712 1.20630 1.18078 1.20328 0.91639 0.90996 0.93881 1.20546 0.98556 0.94191 0.95355 1.21084 0.98029 0.95221 0.98915 1.20898 0.99513 0.99599 0.94624 1.20980 1.00668 0.96654 0.96449 1.21113 0.98399 0.95153 0.99691 1.21174 0.97139 0.99101 0.93226 1.22454 0.86908 0.95532 1.06062 1.45438 1.06643 1.07330 1.54845 1.22029 1.01968 0.79932 1.03328 0.90553 0.91353 0.89007 0.90656 0.89135 0.90053 0.86956 0.87341 0.87036 0.86553 0.85252 0.80402 0.90693 0.89706 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.19 36.01 0.37 -0.41 16 2 C 0.18 3.27 7.90 -155.42 -1.23 2.04 16 3 N -0.40 -9.33 11.25 -10.02 -0.11 -9.45 16 4 C -0.51 -11.71 7.13 -17.81 -0.13 -11.84 16 5 S 2.53 65.40 4.59 -107.50 -0.49 64.90 16 6 O -0.94 -27.86 12.40 -57.17 -0.71 -28.57 16 7 O -1.01 -25.83 16.55 -57.17 -0.95 -26.78 16 8 N -0.82 -19.64 2.19 -61.08 -0.13 -19.77 16 9 C -0.26 -6.78 9.34 -15.06 -0.14 -6.92 16 10 H 0.09 2.50 7.49 -52.48 -0.39 2.11 16 11 C 0.10 2.88 4.45 -17.43 -0.08 2.80 16 12 N -0.80 -22.79 13.97 55.49 0.78 -22.02 16 13 Si 0.84 21.85 25.45 -169.99 -4.33 17.52 16 14 H -0.23 -6.52 5.98 56.52 0.34 -6.18 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.16 3.09 5.82 -5.19 -0.03 3.06 16 18 C -0.08 -1.50 5.31 -104.62 -0.56 -2.05 16 19 C -0.11 -1.82 8.93 -39.59 -0.35 -2.17 16 20 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 21 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 23 C -0.09 -1.47 9.04 -39.58 -0.36 -1.83 16 24 C 0.03 0.50 9.36 -16.56 -0.15 0.35 16 25 N -0.46 -7.04 3.15 -121.27 -0.38 -7.43 16 26 C 0.07 0.63 10.97 59.85 0.66 1.29 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.63 7.07 -51.93 -0.37 0.26 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.61 8.11 -51.92 -0.42 1.19 16 32 H 0.08 1.49 6.89 -51.93 -0.36 1.13 16 33 H 0.11 1.68 5.74 -52.49 -0.30 1.38 16 34 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 2.12 8.03 -52.48 -0.42 1.70 16 38 H 0.18 2.75 7.09 -52.48 -0.37 2.38 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.60 7.05 -51.93 -0.37 0.23 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -36.06 350.85 -9.39 -45.46 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.16 Total: 3.14 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -3.19 Total: -22.30 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.15 Total: -58.66 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.65 Total: -55.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.33 Total: 17.52 kcal Atomic # 16 Polarization: 65.40 SS G_CDS: -0.49 Total: 64.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.06 -9.39 -45.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066101319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.003 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds