Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30495 * 125.65062 * 2 1 4 4 C 1.34129 * 109.26047 * 180.02562 * 3 2 1 5 5 S 1.76206 * 125.99193 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.39922 * 336.47531 * 5 4 3 7 7 O 1.42100 * 106.39572 * 203.56122 * 5 4 3 8 8 N 1.65595 * 107.22018 * 90.01877 * 5 4 3 9 9 C 1.36933 * 119.99919 * 262.45402 * 8 5 4 10 10 H 1.08003 * 119.99865 * 129.32964 * 9 8 5 11 11 C 1.38811 * 120.00302 * 309.32530 * 9 8 5 12 12 N 1.31614 * 120.00362 * 154.21505 * 11 9 8 13 13 Si 1.86802 * 119.99797 * 334.22068 * 11 9 8 14 14 H 1.48501 * 109.47449 * 91.92559 * 13 11 9 15 15 H 1.48501 * 109.47288 * 211.92931 * 13 11 9 16 16 H 1.48506 * 109.47087 * 331.92879 * 13 11 9 17 17 C 1.46501 * 119.99866 * 82.45186 * 8 5 4 18 18 C 1.50701 * 109.47305 * 256.05107 * 17 8 5 19 19 C 1.38233 * 120.00165 * 94.15428 * 18 17 8 20 20 C 1.38233 * 120.00183 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00173 * 0.07200 * 20 19 18 22 22 C 1.38232 * 119.99906 * 359.90683 * 21 20 19 23 23 C 1.38237 * 120.00069 * 274.13779 * 18 17 8 24 24 C 1.34661 * 108.01691 * 0.25780 * 4 3 2 25 25 N 1.35040 * 125.65226 * 180.02562 * 2 1 3 26 26 C 1.46505 * 126.39714 * 359.94441 * 25 2 1 27 27 H 1.08999 * 109.46477 * 89.97946 * 1 2 3 28 28 H 1.08998 * 109.46854 * 209.97956 * 1 2 3 29 29 H 1.09003 * 109.47302 * 329.98138 * 1 2 3 30 30 H 0.97002 * 120.00564 * 180.02562 * 12 11 9 31 31 H 1.09009 * 109.46907 * 136.05226 * 17 8 5 32 32 H 1.08992 * 109.47017 * 16.05277 * 17 8 5 33 33 H 1.07999 * 119.99663 * 359.69993 * 19 18 17 34 34 H 1.08000 * 119.99938 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00456 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00332 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.00169 * 359.97438 * 23 18 17 38 38 H 1.08006 * 126.59089 * 179.70580 * 24 4 3 39 39 H 1.09002 * 109.46904 * 90.00051 * 26 25 2 40 40 H 1.09000 * 109.47288 * 209.99921 * 26 25 2 41 41 H 1.08997 * 109.46911 * 330.00175 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6819 -0.0006 5 16 4.9501 1.7575 -0.0002 6 8 4.5048 2.9928 -0.5433 7 8 6.0304 1.0129 -0.5458 8 7 5.3391 2.0552 1.5817 9 6 4.9002 3.2003 2.1908 10 1 4.3970 3.1457 3.1449 11 6 5.1019 4.4314 1.5821 12 7 4.2958 5.4372 1.8482 13 14 6.5176 4.6607 0.3852 14 1 6.0489 4.3798 -0.9956 15 1 7.0122 6.0586 0.4653 16 1 7.6174 3.7258 0.7343 17 6 6.1528 1.0934 2.3294 18 6 5.2703 0.3106 3.2672 19 6 4.7530 -0.9091 2.8730 20 6 3.9439 -1.6274 3.7334 21 6 3.6510 -1.1253 4.9876 22 6 4.1687 0.0942 5.3820 23 6 4.9785 0.8121 4.5219 24 6 3.5926 -0.6642 -0.0067 25 7 2.2941 -1.0973 -0.0005 26 6 1.8426 -2.4910 0.0000 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 4.4365 6.2974 1.4226 31 1 6.9102 1.6272 2.9037 32 1 6.6393 0.4103 1.6332 33 1 4.9773 -1.2988 1.8910 34 1 3.5394 -2.5802 3.4252 35 1 3.0186 -1.6862 5.6597 36 1 3.9402 0.4864 6.3620 37 1 5.3832 1.7648 4.8302 38 1 4.4777 -1.2831 -0.0132 39 1 1.7298 -2.8368 -1.0275 40 1 2.5777 -3.1109 0.5133 41 1 0.8844 -2.5623 0.5146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066101319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = 10.041290 kcal Electronic energy + Delta-G solvation = -28224.332897 eV Core-core repulsion = 24425.234362 eV Total energy + Delta-G solvation = -3799.098535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.08487 -40.12452 -37.92501 -37.31375 -36.50701 -35.04538 -34.30043 -32.83480 -32.00706 -31.66655 -28.42182 -27.77953 -27.64773 -25.14950 -23.41103 -23.13331 -22.01203 -21.03512 -20.84775 -19.47736 -18.38264 -17.94857 -17.34316 -17.10563 -16.87973 -16.68165 -16.21732 -15.95460 -15.77776 -15.28826 -15.08243 -14.69096 -14.57807 -14.20346 -14.19533 -14.12207 -13.58636 -13.56285 -13.44122 -13.33445 -13.19695 -13.14188 -13.09214 -12.78271 -12.56930 -12.24439 -12.09393 -12.00416 -11.73884 -11.51416 -10.93011 -10.77944 -10.67597 -9.89166 -9.70429 -9.60791 -9.50882 -8.60560 -6.21031 -0.19379 0.54711 0.62730 0.76568 1.24770 1.33984 1.47583 1.73499 1.80421 2.30663 2.56082 2.86455 3.07248 3.18124 3.41406 3.71702 3.86937 3.99592 4.03763 4.03911 4.25082 4.27941 4.34856 4.38103 4.41078 4.60952 4.67347 4.71019 4.73112 4.81356 4.89725 4.98975 5.11385 5.15333 5.23078 5.31307 5.39422 5.64102 5.70624 5.79563 5.90185 6.15562 6.21843 6.24398 6.95599 6.98261 7.15040 8.46993 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.007058 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.795516 B = 3966.091718 C = 5279.613782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.190 3.810 3 N -0.471 5.471 4 C -0.561 4.561 5 S 2.564 3.436 6 O -0.988 6.988 7 O -1.014 7.014 8 N -0.827 5.827 9 C -0.266 4.266 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.848 5.848 13 Si 0.850 3.150 14 H -0.265 1.265 15 H -0.259 1.259 16 H -0.238 1.238 17 C 0.149 3.851 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.132 4.132 23 C -0.109 4.109 24 C 0.054 3.946 25 N -0.445 5.445 26 C 0.055 3.945 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.208 0.792 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -20.676 3.829 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 N -0.190 5.190 4 C -0.771 4.771 5 S 2.668 3.332 6 O -0.978 6.978 7 O -1.003 7.003 8 N -0.652 5.652 9 C -0.412 4.412 10 H 0.097 0.903 11 C -0.141 4.141 12 N -0.484 5.484 13 Si 0.673 3.327 14 H -0.191 1.191 15 H -0.184 1.184 16 H -0.161 1.161 17 C 0.024 3.976 18 C -0.108 4.108 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.128 4.128 24 C -0.087 4.087 25 N -0.125 5.125 26 C -0.085 4.085 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.224 0.776 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.307 -19.709 2.877 20.613 hybrid contribution 0.323 -0.109 -0.637 0.723 sum -4.984 -19.818 2.240 20.557 Atomic orbital electron populations 1.20368 0.81538 1.05322 1.04793 1.24448 0.97620 0.81266 1.04319 1.70237 1.00619 1.30357 1.17764 1.33710 1.12315 1.08499 1.22576 1.08666 0.73525 0.73125 0.77886 1.93421 1.82889 1.43332 1.78113 1.93338 1.52972 1.73956 1.80045 1.52977 1.57249 1.24917 1.30024 1.18520 1.35756 0.81292 1.05676 0.90337 1.26090 0.96950 0.95307 0.95756 1.69874 1.33332 1.04098 1.41110 0.87211 0.81903 0.80889 0.82726 1.19069 1.18447 1.16127 1.20562 0.91964 0.90712 0.94371 1.20385 0.99770 0.95289 0.95370 1.21261 0.98451 0.94745 0.99830 1.21305 0.98194 1.00543 0.94136 1.21421 0.99924 0.96003 0.96915 1.21404 0.97706 0.95680 1.00209 1.21229 0.98463 0.99274 0.93849 1.22738 0.89148 0.94020 1.02812 1.45723 1.05007 1.09500 1.52306 1.22624 1.04073 0.76090 1.05678 0.88650 0.86973 0.90230 0.90639 0.88551 0.89096 0.86110 0.83629 0.83615 0.84642 0.86547 0.77584 0.88556 0.87180 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.32 10.19 71.24 0.73 -0.59 16 2 C 0.19 6.24 7.90 138.13 1.09 7.33 16 3 N -0.47 -21.86 11.25 -185.63 -2.09 -23.95 16 4 C -0.56 -25.41 7.13 83.52 0.60 -24.82 16 5 S 2.56 135.29 4.59 -56.49 -0.26 135.03 16 6 O -0.99 -61.34 12.40 -128.00 -1.59 -62.92 16 7 O -1.01 -51.97 16.55 -128.00 -2.12 -54.09 16 8 N -0.83 -41.00 2.19 -347.17 -0.76 -41.76 16 9 C -0.27 -14.80 9.34 84.03 0.79 -14.01 16 10 H 0.08 4.51 7.49 -2.91 -0.02 4.48 16 11 C 0.07 4.31 4.45 84.86 0.38 4.69 16 12 N -0.85 -51.33 13.97 21.65 0.30 -51.03 16 13 Si 0.85 45.99 25.45 68.60 1.75 47.74 16 14 H -0.26 -15.66 5.98 99.48 0.60 -15.07 16 15 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.24 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.15 5.93 5.82 85.63 0.50 6.43 16 18 C -0.11 -3.72 5.31 -19.87 -0.11 -3.83 16 19 C -0.12 -3.65 8.93 22.27 0.20 -3.45 16 20 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 21 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 23 C -0.11 -3.69 9.04 22.27 0.20 -3.49 16 24 C 0.05 1.81 9.36 83.08 0.78 2.59 16 25 N -0.44 -11.63 3.15 -537.60 -1.69 -13.32 16 26 C 0.06 0.62 10.97 127.77 1.40 2.02 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.38 7.07 -2.39 -0.02 1.36 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.28 16.13 8.31 -92.71 -0.77 15.36 16 31 H 0.10 3.58 8.11 -2.38 -0.02 3.56 16 32 H 0.09 3.32 6.89 -2.39 -0.02 3.31 16 33 H 0.12 3.21 5.74 -2.91 -0.02 3.20 16 34 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.12 4.07 8.03 -2.91 -0.02 4.05 16 38 H 0.21 5.53 7.09 -2.91 -0.02 5.51 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.72 7.05 -2.39 -0.02 0.70 16 Total: -1.00 -86.03 350.85 1.70 -84.33 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.94 Total: 15.91 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 7.22 Total: -35.95 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -4.24 Total: -130.05 kcal Atomic # 8 Polarization: -113.31 SS G_CDS: -3.70 Total: -117.01 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.75 Total: 47.74 kcal Atomic # 16 Polarization: 135.29 SS G_CDS: -0.26 Total: 135.03 kcal Total: -86.03 1.70 -84.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066101319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.372 kcal (2) G-P(sol) polarization free energy of solvation -86.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds