Wall clock time and date at job start Tue Mar 31 2020 19:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.53278 * 2 1 4 4 C 1.51581 * 110.77096 * 237.09678 * 2 1 3 5 5 O 1.21236 * 127.15935 * 61.63609 * 4 2 1 6 6 N 1.34770 * 105.68548 * 241.71160 * 4 2 1 7 7 C 1.46500 * 124.17804 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.46949 * 269.72931 * 7 6 4 9 9 O 1.21288 * 120.00224 * 359.72213 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99970 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99992 * 0.02562 * 11 10 8 13 13 C 1.38956 * 120.00025 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99899 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99766 * 15 13 11 17 17 H 1.48494 * 109.47285 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46819 * 300.00061 * 15 13 11 19 19 C 1.33785 * 111.64338 * 359.66067 * 6 4 2 20 20 O 1.21540 * 123.77510 * 180.22836 * 19 6 4 21 21 N 1.34531 * 112.46245 * 0.22827 * 19 6 4 22 22 C 1.40039 * 126.69395 * 180.02562 * 21 19 6 23 23 C 1.38847 * 120.04567 * 179.69641 * 22 21 19 24 24 C 1.38124 * 119.95807 * 179.71945 * 23 22 21 25 25 C 1.38465 * 120.04002 * 0.57741 * 24 23 22 26 26 F 1.35100 * 119.95532 * 179.69989 * 25 24 23 27 27 C 1.38476 * 120.09350 * 359.67837 * 25 24 23 28 28 C 1.38114 * 120.04186 * 0.03906 * 27 25 24 29 29 H 1.08994 * 109.47785 * 297.17116 * 1 2 3 30 30 H 1.09004 * 109.47030 * 57.17946 * 1 2 3 31 31 H 1.09003 * 109.46896 * 177.16651 * 1 2 3 32 32 H 1.09000 * 109.47175 * 149.72957 * 7 6 4 33 33 H 1.09001 * 109.47297 * 29.72464 * 7 6 4 34 34 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 35 35 H 0.97005 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.02096 * 359.97438 * 23 22 21 37 37 H 1.08001 * 119.97654 * 180.27790 * 24 23 22 38 38 H 1.07999 * 119.97766 * 180.02562 * 27 25 24 39 39 H 1.07996 * 120.02256 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0675 -0.7699 -1.1899 5 8 1.8980 -0.5165 -2.3633 6 7 2.7717 -1.7958 -0.6722 7 6 3.4698 -2.8029 -1.4751 8 6 2.5413 -3.9574 -1.7509 9 8 1.4095 -3.9429 -1.3151 10 7 2.9702 -5.0083 -2.4776 11 6 2.1257 -6.0589 -2.7280 12 1 1.1166 -6.0441 -2.3434 13 6 2.5680 -7.1426 -3.4768 14 7 3.7960 -7.1608 -3.9444 15 14 1.4172 -8.5737 -3.8187 16 1 0.2277 -8.0857 -4.5619 17 1 2.1250 -9.5948 -4.6320 18 1 0.9840 -9.1785 -2.5335 19 6 2.7599 -1.7770 0.6654 20 8 3.3287 -2.5982 1.3577 21 7 2.0482 -0.7475 1.1588 22 6 1.8409 -0.4451 2.5104 23 6 1.0828 0.6623 2.8666 24 6 0.8746 0.9556 4.2002 25 6 1.4313 0.1529 5.1816 26 9 1.2316 0.4449 6.4854 27 6 2.1921 -0.9489 4.8285 28 6 2.3978 -1.2489 3.4961 29 1 -0.3634 0.4692 0.9142 30 1 -0.3633 0.5570 -0.8637 31 1 -0.3633 -1.0265 -0.0508 32 1 4.3429 -3.1611 -0.9295 33 1 3.7878 -2.3590 -2.4185 34 1 3.8766 -5.0218 -2.8227 35 1 4.1047 -7.9172 -4.4674 36 1 0.6527 1.2915 2.1014 37 1 0.2812 1.8143 4.4776 38 1 2.6252 -1.5739 5.5954 39 1 2.9915 -2.1080 3.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076609753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:39 Heat of formation + Delta-G solvation = -78.680989 kcal Electronic energy + Delta-G solvation = -28554.187336 eV Core-core repulsion = 24185.028338 eV Total energy + Delta-G solvation = -4369.158997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02633 -42.74310 -39.56213 -38.49490 -38.17084 -36.50337 -35.20578 -33.98292 -31.95082 -31.45379 -31.21923 -29.93052 -27.99763 -25.17095 -24.59492 -23.55542 -23.37130 -21.62619 -20.75479 -19.45456 -18.31988 -18.00488 -17.83941 -17.37821 -16.78138 -16.49425 -15.87625 -15.85409 -15.70722 -15.31910 -14.90697 -14.60833 -14.41002 -14.26600 -14.03797 -13.90243 -13.75000 -13.61601 -13.44096 -13.23767 -12.77668 -12.59518 -12.38039 -12.11439 -11.79775 -11.64611 -11.52090 -11.08530 -10.61751 -10.52813 -10.49735 -10.30734 -10.10561 -10.06926 -9.61362 -9.41435 -8.52821 -8.14290 -8.09370 -6.50939 -3.92390 0.80969 0.94436 1.63880 1.79419 2.66907 2.94660 3.14481 3.22053 3.26500 3.43580 3.68572 3.77415 4.06594 4.10822 4.24778 4.50591 4.53601 4.58522 4.75600 4.80883 4.96340 5.08973 5.09930 5.26145 5.32777 5.40774 5.42512 5.55686 5.59439 5.69980 5.81552 5.88320 6.03480 6.11177 6.17339 6.25549 6.69438 7.03330 7.32340 7.46705 7.89065 7.96988 8.46036 9.05690 9.37951 9.87083 10.65998 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002845 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.527166 B = 9840.169496 C =10583.603107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 H 0.132 0.868 4 C 0.534 3.466 5 O -0.456 6.456 6 N -0.547 5.547 7 C 0.105 3.895 8 C 0.424 3.576 9 O -0.588 6.588 10 N -0.549 5.549 11 C -0.302 4.302 12 H 0.104 0.896 13 C 0.026 3.974 14 N -0.896 5.896 15 Si 0.933 3.067 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.712 3.288 20 O -0.518 6.518 21 N -0.564 5.564 22 C 0.191 3.809 23 C -0.135 4.135 24 C -0.122 4.122 25 C 0.067 3.933 26 F -0.143 7.143 27 C -0.118 4.118 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 18.111 12.070 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.016 4.016 3 H 0.150 0.850 4 C 0.320 3.680 5 O -0.325 6.325 6 N -0.291 5.291 7 C -0.019 4.019 8 C 0.208 3.792 9 O -0.473 6.473 10 N -0.184 5.184 11 C -0.432 4.432 12 H 0.121 0.879 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.415 3.585 20 O -0.390 6.390 21 N -0.292 5.292 22 C 0.097 3.903 23 C -0.156 4.156 24 C -0.141 4.141 25 C 0.046 3.954 26 F -0.121 7.121 27 C -0.137 4.137 28 C -0.145 4.145 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.850 17.586 11.957 21.346 hybrid contribution 0.008 -0.806 -0.294 0.858 sum -1.842 16.780 11.662 20.518 Atomic orbital electron populations 1.22097 0.89975 1.05231 1.04305 1.22282 0.98557 0.98005 0.82776 0.85050 1.20568 0.77086 0.80543 0.89766 1.90814 1.55868 1.69539 1.16243 1.45769 1.49060 1.27272 1.06950 1.21516 0.95481 0.88581 0.96355 1.19820 0.89008 0.85075 0.85305 1.90536 1.20263 1.80667 1.55864 1.41745 1.15035 1.16186 1.45457 1.19659 0.96914 0.95514 1.31075 0.87859 1.25300 0.96705 0.99164 0.96461 1.69598 1.16052 1.32452 1.35564 0.85879 0.79593 0.79908 0.78644 1.19778 1.20811 1.19764 1.15650 0.79599 0.81301 0.81950 1.90886 1.47666 1.40273 1.60188 1.44981 1.51398 1.28412 1.04372 1.17412 0.97597 0.95362 0.79919 1.20651 1.01281 0.97365 0.96307 1.20868 1.01260 1.00461 0.91520 1.17675 1.01981 0.97551 0.78160 1.91489 1.93774 1.93189 1.33678 1.21061 0.99139 0.96655 0.96888 1.21447 1.01228 1.01210 0.90585 0.89964 0.89255 0.90380 0.86784 0.86879 0.77166 0.91561 0.84206 0.84198 0.84119 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.29 37.16 0.35 -1.15 16 2 C 0.09 0.97 3.33 -68.20 -0.23 0.74 16 3 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.53 8.09 7.66 -10.55 -0.08 8.01 16 5 O -0.46 -7.91 17.75 5.60 0.10 -7.81 16 6 N -0.55 -9.20 2.09 -122.02 -0.26 -9.46 16 7 C 0.11 1.87 6.18 -5.19 -0.03 1.84 16 8 C 0.42 10.02 7.85 -10.98 -0.09 9.94 16 9 O -0.59 -16.01 16.01 5.55 0.09 -15.92 16 10 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 11 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 13 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 14 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.71 11.77 8.23 -88.02 -0.72 11.05 16 20 O -0.52 -9.75 14.45 5.33 0.08 -9.67 16 21 N -0.56 -7.26 2.95 -112.24 -0.33 -7.59 16 22 C 0.19 2.20 6.55 -83.66 -0.55 1.65 16 23 C -0.14 -1.15 8.72 -39.40 -0.34 -1.50 16 24 C -0.12 -1.01 10.02 -39.54 -0.40 -1.40 16 25 C 0.07 0.66 7.30 -39.41 -0.29 0.37 16 26 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 27 C -0.12 -1.22 10.02 -39.54 -0.40 -1.62 16 28 C -0.12 -1.51 9.36 -39.40 -0.37 -1.88 16 29 H 0.08 0.57 5.57 -51.93 -0.29 0.28 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.11 1.81 7.86 -51.93 -0.41 1.40 16 33 H 0.11 1.73 8.00 -51.93 -0.42 1.32 16 34 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.14 0.83 5.75 -52.48 -0.30 0.53 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.17 2.33 5.41 -52.49 -0.28 2.04 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -34.07 345.91 -6.46 -40.53 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.65 Total: 9.26 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: -3.39 Total: 18.13 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.08 Total: -54.15 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: 0.27 Total: -33.40 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.07 -6.46 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.149 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds