Wall clock time and date at job start Tue Mar 31 2020 19:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.53278 * 2 1 4 4 C 1.51581 * 110.77096 * 237.09678 * 2 1 3 5 5 O 1.21236 * 127.15935 * 61.63609 * 4 2 1 6 6 N 1.34770 * 105.68548 * 241.71160 * 4 2 1 7 7 C 1.46500 * 124.17804 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.46949 * 269.72931 * 7 6 4 9 9 O 1.21288 * 120.00224 * 359.72213 * 8 7 6 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 6 11 11 C 1.37095 * 119.99970 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99992 * 0.02562 * 11 10 8 13 13 C 1.38956 * 120.00025 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99899 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99766 * 15 13 11 17 17 H 1.48494 * 109.47285 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46819 * 300.00061 * 15 13 11 19 19 C 1.33785 * 111.64338 * 359.66067 * 6 4 2 20 20 O 1.21540 * 123.77510 * 180.22836 * 19 6 4 21 21 N 1.34531 * 112.46245 * 0.22827 * 19 6 4 22 22 C 1.40039 * 126.69395 * 180.02562 * 21 19 6 23 23 C 1.38847 * 120.04567 * 179.69641 * 22 21 19 24 24 C 1.38124 * 119.95807 * 179.71945 * 23 22 21 25 25 C 1.38465 * 120.04002 * 0.57741 * 24 23 22 26 26 F 1.35100 * 119.95532 * 179.69989 * 25 24 23 27 27 C 1.38476 * 120.09350 * 359.67837 * 25 24 23 28 28 C 1.38114 * 120.04186 * 0.03906 * 27 25 24 29 29 H 1.08994 * 109.47785 * 297.17116 * 1 2 3 30 30 H 1.09004 * 109.47030 * 57.17946 * 1 2 3 31 31 H 1.09003 * 109.46896 * 177.16651 * 1 2 3 32 32 H 1.09000 * 109.47175 * 149.72957 * 7 6 4 33 33 H 1.09001 * 109.47297 * 29.72464 * 7 6 4 34 34 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 35 35 H 0.97005 * 120.00019 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.02096 * 359.97438 * 23 22 21 37 37 H 1.08001 * 119.97654 * 180.27790 * 24 23 22 38 38 H 1.07999 * 119.97766 * 180.02562 * 27 25 24 39 39 H 1.07996 * 120.02256 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0675 -0.7699 -1.1899 5 8 1.8980 -0.5165 -2.3633 6 7 2.7717 -1.7958 -0.6722 7 6 3.4698 -2.8029 -1.4751 8 6 2.5413 -3.9574 -1.7509 9 8 1.4095 -3.9429 -1.3151 10 7 2.9702 -5.0083 -2.4776 11 6 2.1257 -6.0589 -2.7280 12 1 1.1166 -6.0441 -2.3434 13 6 2.5680 -7.1426 -3.4768 14 7 3.7960 -7.1608 -3.9444 15 14 1.4172 -8.5737 -3.8187 16 1 0.2277 -8.0857 -4.5619 17 1 2.1250 -9.5948 -4.6320 18 1 0.9840 -9.1785 -2.5335 19 6 2.7599 -1.7770 0.6654 20 8 3.3287 -2.5982 1.3577 21 7 2.0482 -0.7475 1.1588 22 6 1.8409 -0.4451 2.5104 23 6 1.0828 0.6623 2.8666 24 6 0.8746 0.9556 4.2002 25 6 1.4313 0.1529 5.1816 26 9 1.2316 0.4449 6.4854 27 6 2.1921 -0.9489 4.8285 28 6 2.3978 -1.2489 3.4961 29 1 -0.3634 0.4692 0.9142 30 1 -0.3633 0.5570 -0.8637 31 1 -0.3633 -1.0265 -0.0508 32 1 4.3429 -3.1611 -0.9295 33 1 3.7878 -2.3590 -2.4185 34 1 3.8766 -5.0218 -2.8227 35 1 4.1047 -7.9172 -4.4674 36 1 0.6527 1.2915 2.1014 37 1 0.2812 1.8143 4.4776 38 1 2.6252 -1.5739 5.5954 39 1 2.9915 -2.1080 3.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076609753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:38 Heat of formation + Delta-G solvation = -101.329205 kcal Electronic energy + Delta-G solvation = -28555.169436 eV Core-core repulsion = 24185.028338 eV Total energy + Delta-G solvation = -4370.141098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81974 -43.89100 -40.62850 -40.03475 -39.55125 -37.66872 -36.54355 -35.91617 -33.44698 -32.79026 -32.09466 -31.03318 -29.25653 -26.85761 -25.83835 -24.48842 -24.33361 -22.59964 -22.07631 -21.04435 -20.09983 -19.20419 -18.80886 -18.58773 -18.01052 -17.46817 -17.40790 -17.11829 -16.58539 -16.51938 -16.37995 -15.92208 -15.81789 -15.62969 -15.43140 -15.28575 -14.77507 -14.64479 -14.33410 -14.21466 -14.05005 -13.61648 -13.59024 -13.40680 -13.14193 -12.94592 -12.91204 -12.53608 -12.47079 -12.16150 -11.67351 -11.61045 -11.51753 -11.43093 -11.27289 -10.40825 -10.15890 -10.13705 -9.02713 -8.54778 -6.04942 -0.06309 0.19515 0.52399 0.67218 1.33953 1.38434 1.49185 1.60564 1.79179 1.85804 2.25245 2.59764 2.70747 3.05275 3.10469 3.30545 3.35413 3.70699 3.82302 3.84185 3.94604 4.01662 4.06298 4.16723 4.20352 4.30308 4.36318 4.56459 4.66366 4.70178 4.94545 5.06959 5.15851 5.19522 5.28643 5.32647 5.33010 5.82263 5.85831 5.94942 6.16163 6.44514 6.73994 7.00264 7.38074 7.91648 8.61796 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.002845 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.527166 B = 9840.169496 C =10583.603107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.099 3.901 3 H 0.185 0.815 4 C 0.525 3.475 5 O -0.484 6.484 6 N -0.558 5.558 7 C 0.114 3.886 8 C 0.420 3.580 9 O -0.629 6.629 10 N -0.557 5.557 11 C -0.339 4.339 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.913 5.913 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.266 1.266 18 H -0.272 1.272 19 C 0.701 3.299 20 O -0.554 6.554 21 N -0.555 5.555 22 C 0.169 3.831 23 C -0.116 4.116 24 C -0.109 4.109 25 C 0.060 3.940 26 F -0.146 7.146 27 C -0.123 4.123 28 C -0.146 4.146 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.147 0.853 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 20.605 12.538 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.006 4.006 3 H 0.202 0.798 4 C 0.314 3.686 5 O -0.354 6.354 6 N -0.302 5.302 7 C -0.011 4.011 8 C 0.206 3.794 9 O -0.516 6.516 10 N -0.193 5.193 11 C -0.469 4.469 12 H 0.096 0.904 13 C -0.208 4.208 14 N -0.553 5.553 15 Si 0.817 3.183 16 H -0.195 1.195 17 H -0.190 1.190 18 H -0.198 1.198 19 C 0.404 3.596 20 O -0.429 6.429 21 N -0.282 5.282 22 C 0.076 3.924 23 C -0.136 4.136 24 C -0.128 4.128 25 C 0.040 3.960 26 F -0.125 7.125 27 C -0.143 4.143 28 C -0.166 4.166 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.195 0.805 37 H 0.193 0.807 38 H 0.165 0.835 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.860 20.126 12.442 23.833 hybrid contribution 0.312 -1.529 -0.351 1.599 sum -2.547 18.597 12.090 22.328 Atomic orbital electron populations 1.22158 0.88519 1.03543 1.06932 1.22615 0.99340 0.99074 0.79525 0.79806 1.21378 0.76257 0.80286 0.90682 1.90793 1.56706 1.70260 1.17660 1.45946 1.49516 1.27388 1.07304 1.21403 0.94410 0.87062 0.98242 1.20826 0.89249 0.85796 0.83494 1.90497 1.22436 1.81717 1.56983 1.41792 1.15045 1.16369 1.46100 1.19614 0.96710 0.97492 1.33036 0.90376 1.26082 0.98248 1.00948 0.95527 1.69652 1.16965 1.33279 1.35372 0.84973 0.77809 0.76962 0.78511 1.19541 1.19049 1.19773 1.15914 0.79981 0.81950 0.81713 1.90865 1.49386 1.41888 1.60780 1.45019 1.50358 1.27394 1.05442 1.17681 0.99081 0.96738 0.78865 1.20986 0.99378 0.95953 0.97311 1.21257 1.00169 1.00588 0.90754 1.17864 1.02007 0.97627 0.78466 1.91486 1.93771 1.93154 1.34043 1.21104 0.99495 0.97328 0.96337 1.21274 1.02289 1.01238 0.91814 0.86560 0.87396 0.94138 0.85043 0.84283 0.76516 0.90914 0.80548 0.80736 0.83478 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.29 71.98 0.67 -1.77 16 2 C 0.10 1.87 3.33 44.37 0.15 2.01 16 3 H 0.19 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.53 15.48 7.66 87.94 0.67 16.16 16 5 O -0.48 -16.49 17.75 -2.89 -0.05 -16.54 16 6 N -0.56 -18.93 2.09 -777.20 -1.63 -20.55 16 7 C 0.11 4.11 6.18 85.63 0.53 4.64 16 8 C 0.42 20.65 7.85 87.66 0.69 21.33 16 9 O -0.63 -35.82 16.01 -3.05 -0.05 -35.87 16 10 N -0.56 -29.02 5.29 -306.98 -1.62 -30.64 16 11 C -0.34 -19.49 9.68 84.04 0.81 -18.68 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 14 N -0.91 -49.01 13.05 21.66 0.28 -48.73 16 15 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C 0.70 23.61 8.23 179.44 1.48 25.09 16 20 O -0.55 -21.96 14.45 -3.84 -0.06 -22.02 16 21 N -0.56 -13.58 2.95 -627.43 -1.85 -15.44 16 22 C 0.17 3.61 6.55 38.12 0.25 3.86 16 23 C -0.12 -1.48 8.72 22.39 0.20 -1.29 16 24 C -0.11 -1.34 10.02 22.30 0.22 -1.11 16 25 C 0.06 1.06 7.30 22.38 0.16 1.23 16 26 F -0.15 -2.75 17.26 44.97 0.78 -1.98 16 27 C -0.12 -2.51 10.02 22.30 0.22 -2.28 16 28 C -0.15 -3.60 9.36 22.39 0.21 -3.39 16 29 H 0.12 1.03 5.57 -2.39 -0.01 1.01 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 4.26 7.86 -2.39 -0.02 4.24 16 33 H 0.14 4.25 8.00 -2.39 -0.02 4.23 16 34 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 35 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 36 H 0.18 0.93 5.75 -2.91 -0.02 0.91 16 37 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.14 4.18 5.41 -2.91 -0.02 4.16 16 Total: -1.00 -78.82 345.91 4.97 -73.85 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.41 Total: 26.99 kcal Atomic # 6 Polarization: 39.16 SS G_CDS: 6.73 Total: 45.89 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.82 Total: -115.36 kcal Atomic # 8 Polarization: -74.27 SS G_CDS: -0.16 Total: -74.43 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -78.82 4.97 -73.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.480 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds