Wall clock time and date at job start Tue Mar 31 2020 19:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.53782 * 2 1 4 4 C 1.51586 * 110.56618 * 123.01499 * 2 1 3 5 5 O 1.21231 * 127.16007 * 298.75749 * 4 2 1 6 6 N 1.34768 * 105.68119 * 118.82933 * 4 2 1 7 7 C 1.46506 * 124.17374 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46888 * 269.72686 * 7 6 4 9 9 O 1.21293 * 120.00471 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.37106 * 119.99958 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00328 * 0.02562 * 11 10 8 13 13 C 1.38947 * 119.99689 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00367 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99822 * 180.27886 * 13 11 10 16 16 H 1.48497 * 109.47322 * 179.73003 * 15 13 11 17 17 H 1.48506 * 109.47056 * 299.72747 * 15 13 11 18 18 H 1.48501 * 109.47099 * 59.72776 * 15 13 11 19 19 C 1.33784 * 111.64794 * 359.66200 * 6 4 2 20 20 O 1.21541 * 123.77331 * 180.22736 * 19 6 4 21 21 N 1.34529 * 112.45881 * 0.22891 * 19 6 4 22 22 C 1.40049 * 126.69072 * 179.97438 * 21 19 6 23 23 C 1.38848 * 120.04286 * 179.74398 * 22 21 19 24 24 C 1.38119 * 119.95246 * 179.77017 * 23 22 21 25 25 C 1.38473 * 120.04259 * 0.50989 * 24 23 22 26 26 F 1.35103 * 119.94798 * 179.72277 * 25 24 23 27 27 C 1.38465 * 120.09369 * 359.74618 * 25 24 23 28 28 C 1.38115 * 120.04194 * 359.97438 * 27 25 24 29 29 H 1.09003 * 109.47070 * 182.83432 * 1 2 3 30 30 H 1.08998 * 109.47087 * 302.83266 * 1 2 3 31 31 H 1.09001 * 109.47450 * 62.83024 * 1 2 3 32 32 H 1.08998 * 109.47293 * 149.72616 * 7 6 4 33 33 H 1.08997 * 109.47284 * 29.72541 * 7 6 4 34 34 H 0.97000 * 120.00327 * 0.02562 * 10 8 7 35 35 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.02193 * 0.02714 * 23 22 21 37 37 H 1.07999 * 119.97571 * 180.23379 * 24 23 22 38 38 H 1.07996 * 119.98136 * 179.97438 * 27 25 24 39 39 H 1.08002 * 120.02061 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0624 -0.7733 1.1901 5 8 1.8845 -0.5256 2.3634 6 7 2.7762 -1.7925 0.6724 7 6 3.4745 -2.7995 1.4754 8 6 4.8813 -2.3348 1.7511 9 8 5.2633 -1.2677 1.3190 10 7 5.7151 -3.1049 2.4779 11 6 6.9952 -2.6824 2.7283 12 1 7.3353 -1.7324 2.3435 13 6 7.8545 -3.4761 3.4780 14 7 7.4406 -4.6320 3.9466 15 14 9.5962 -2.8970 3.8257 16 1 10.3019 -3.9146 4.6452 17 1 10.3197 -2.7059 2.5430 18 1 9.5515 -1.6101 4.5654 19 6 2.7627 -1.7751 -0.6652 20 8 3.3324 -2.5959 -1.3574 21 7 2.0483 -0.7476 -1.1587 22 6 1.8386 -0.4469 -2.5104 23 6 1.0681 0.6519 -2.8667 24 6 0.8665 0.9494 -4.2003 25 6 1.4233 0.1467 -5.1816 26 9 1.2202 0.4363 -6.4855 27 6 2.1876 -0.9526 -4.8284 28 6 2.3964 -1.2502 -3.4959 29 1 -0.3633 -1.0264 0.0508 30 1 -0.3633 0.5572 0.8635 31 1 -0.3634 0.4693 -0.9143 32 1 3.5038 -3.7427 0.9301 33 1 2.9474 -2.9414 2.4188 34 1 5.4098 -3.9584 2.8232 35 1 8.0407 -5.1863 4.4697 36 1 0.6303 1.2758 -2.1016 37 1 0.2704 1.8062 -4.4778 38 1 2.6207 -1.5777 -5.5952 39 1 2.9929 -2.1075 -3.2208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076609756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:42 Heat of formation + Delta-G solvation = -78.474605 kcal Electronic energy + Delta-G solvation = -28489.035399 eV Core-core repulsion = 24119.885351 eV Total energy + Delta-G solvation = -4369.150048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.02704 -42.75082 -39.56522 -38.50120 -38.17320 -36.51163 -35.21091 -33.98252 -31.99205 -31.45470 -31.23301 -29.96152 -27.99973 -25.19597 -24.60313 -23.55992 -23.37998 -21.63340 -20.74436 -19.44149 -18.32094 -18.05687 -17.81015 -17.51183 -16.64299 -16.47781 -15.98090 -15.80964 -15.71237 -15.34502 -14.90740 -14.61841 -14.44568 -14.25668 -14.04031 -13.93806 -13.76719 -13.63878 -13.43862 -13.25014 -12.82300 -12.59045 -12.45666 -12.22806 -11.79945 -11.64618 -11.52363 -11.08398 -10.63161 -10.52293 -10.49530 -10.30787 -10.11265 -10.07317 -9.61349 -9.41716 -8.53019 -8.14656 -8.09347 -6.50869 -3.92388 0.80744 0.94204 1.64349 1.79291 2.66379 2.93072 3.14646 3.22187 3.26725 3.43533 3.68279 3.76692 4.06252 4.10913 4.22954 4.44164 4.52867 4.59554 4.75351 4.81148 4.95887 5.06027 5.08836 5.16473 5.30283 5.33237 5.41950 5.54855 5.58539 5.61985 5.72011 5.83917 6.03270 6.11133 6.17030 6.25266 6.69174 7.03019 7.32173 7.46852 7.89061 7.96890 8.46031 9.05758 9.37920 9.87065 10.66048 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.002845 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.166904 B = 9838.049061 C =10811.691061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.088 3.912 3 H 0.134 0.866 4 C 0.535 3.465 5 O -0.456 6.456 6 N -0.547 5.547 7 C 0.106 3.894 8 C 0.423 3.577 9 O -0.588 6.588 10 N -0.549 5.549 11 C -0.302 4.302 12 H 0.104 0.896 13 C 0.026 3.974 14 N -0.896 5.896 15 Si 0.933 3.067 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.712 3.288 20 O -0.518 6.518 21 N -0.564 5.564 22 C 0.191 3.809 23 C -0.136 4.136 24 C -0.122 4.122 25 C 0.067 3.933 26 F -0.143 7.143 27 C -0.118 4.118 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 7.104 -12.087 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 H 0.152 0.848 4 C 0.321 3.679 5 O -0.324 6.324 6 N -0.291 5.291 7 C -0.019 4.019 8 C 0.208 3.792 9 O -0.474 6.474 10 N -0.184 5.184 11 C -0.432 4.432 12 H 0.121 0.879 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.760 3.240 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.198 1.198 19 C 0.415 3.585 20 O -0.390 6.390 21 N -0.291 5.291 22 C 0.097 3.903 23 C -0.156 4.156 24 C -0.141 4.141 25 C 0.046 3.954 26 F -0.121 7.121 27 C -0.137 4.137 28 C -0.145 4.145 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.717 7.282 -11.967 21.810 hybrid contribution 0.844 -0.221 0.289 0.919 sum -15.873 7.061 -11.679 20.933 Atomic orbital electron populations 1.22102 0.90164 1.04421 1.04688 1.22295 0.97976 0.98737 0.82836 0.84817 1.20532 0.77344 0.80255 0.89734 1.90813 1.57277 1.68121 1.16233 1.45767 1.47498 1.28838 1.06953 1.21511 0.93604 0.90431 0.96354 1.19823 0.86800 0.87298 0.85309 1.90542 1.77010 1.23810 1.56016 1.41748 1.11722 1.19545 1.45394 1.19661 0.86946 1.05508 1.31051 0.87853 1.25300 1.00546 0.95339 0.96440 1.69599 1.37473 1.11051 1.35547 0.85878 0.81183 0.78314 0.78642 1.20809 1.19761 1.19772 1.15646 0.79163 0.81728 0.81950 1.90886 1.46899 1.41029 1.60195 1.44961 1.51644 1.28161 1.04355 1.17415 0.97412 0.95552 0.79909 1.20654 1.01286 0.97386 0.96310 1.20868 1.01394 1.00317 0.91518 1.17675 1.01991 0.97536 0.78161 1.91490 1.93723 1.93238 1.33675 1.21059 0.98985 0.96802 0.96887 1.21447 1.00888 1.01546 0.90583 0.91100 0.89131 0.89824 0.86784 0.86871 0.77158 0.91559 0.84204 0.84194 0.84112 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.28 37.15 0.34 -0.76 16 2 C 0.09 0.95 3.36 -68.21 -0.23 0.72 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.54 8.12 7.65 -10.55 -0.08 8.04 16 5 O -0.46 -7.91 17.75 5.60 0.10 -7.81 16 6 N -0.55 -9.22 2.09 -122.02 -0.26 -9.47 16 7 C 0.11 1.88 6.18 -5.19 -0.03 1.84 16 8 C 0.42 10.06 7.85 -10.99 -0.09 9.97 16 9 O -0.59 -16.15 16.01 5.55 0.09 -16.06 16 10 N -0.55 -13.81 5.29 -10.96 -0.06 -13.87 16 11 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 14 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 15 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.71 11.79 8.23 -88.02 -0.72 11.07 16 20 O -0.52 -9.75 14.45 5.33 0.08 -9.67 16 21 N -0.56 -7.27 2.95 -112.24 -0.33 -7.60 16 22 C 0.19 2.20 6.55 -83.65 -0.55 1.65 16 23 C -0.14 -1.15 8.73 -39.40 -0.34 -1.50 16 24 C -0.12 -1.01 10.02 -39.54 -0.40 -1.40 16 25 C 0.07 0.66 7.30 -39.41 -0.29 0.37 16 26 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 27 C -0.12 -1.22 10.02 -39.54 -0.40 -1.62 16 28 C -0.12 -1.51 9.36 -39.40 -0.37 -1.88 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.43 5.51 -51.93 -0.29 0.15 16 32 H 0.11 1.81 7.86 -51.93 -0.41 1.40 16 33 H 0.11 1.74 8.00 -51.93 -0.42 1.32 16 34 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.14 0.83 5.69 -52.49 -0.30 0.53 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.17 2.33 5.41 -52.49 -0.28 2.05 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -34.28 345.81 -6.46 -40.74 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.64 Total: 8.80 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: -3.39 Total: 18.58 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.08 Total: -54.22 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: 0.27 Total: -33.55 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.28 -6.46 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.739 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds