Wall clock time and date at job start Tue Mar 31 2020 19:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.53782 * 2 1 4 4 C 1.51586 * 110.56618 * 123.01499 * 2 1 3 5 5 O 1.21231 * 127.16007 * 298.75749 * 4 2 1 6 6 N 1.34768 * 105.68119 * 118.82933 * 4 2 1 7 7 C 1.46506 * 124.17374 * 179.97438 * 6 4 2 8 8 C 1.50699 * 109.46888 * 269.72686 * 7 6 4 9 9 O 1.21293 * 120.00471 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99768 * 179.97438 * 8 7 6 11 11 C 1.37106 * 119.99958 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00328 * 0.02562 * 11 10 8 13 13 C 1.38947 * 119.99689 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00367 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99822 * 180.27886 * 13 11 10 16 16 H 1.48497 * 109.47322 * 179.73003 * 15 13 11 17 17 H 1.48506 * 109.47056 * 299.72747 * 15 13 11 18 18 H 1.48501 * 109.47099 * 59.72776 * 15 13 11 19 19 C 1.33784 * 111.64794 * 359.66200 * 6 4 2 20 20 O 1.21541 * 123.77331 * 180.22736 * 19 6 4 21 21 N 1.34529 * 112.45881 * 0.22891 * 19 6 4 22 22 C 1.40049 * 126.69072 * 179.97438 * 21 19 6 23 23 C 1.38848 * 120.04286 * 179.74398 * 22 21 19 24 24 C 1.38119 * 119.95246 * 179.77017 * 23 22 21 25 25 C 1.38473 * 120.04259 * 0.50989 * 24 23 22 26 26 F 1.35103 * 119.94798 * 179.72277 * 25 24 23 27 27 C 1.38465 * 120.09369 * 359.74618 * 25 24 23 28 28 C 1.38115 * 120.04194 * 359.97438 * 27 25 24 29 29 H 1.09003 * 109.47070 * 182.83432 * 1 2 3 30 30 H 1.08998 * 109.47087 * 302.83266 * 1 2 3 31 31 H 1.09001 * 109.47450 * 62.83024 * 1 2 3 32 32 H 1.08998 * 109.47293 * 149.72616 * 7 6 4 33 33 H 1.08997 * 109.47284 * 29.72541 * 7 6 4 34 34 H 0.97000 * 120.00327 * 0.02562 * 10 8 7 35 35 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 36 36 H 1.08001 * 120.02193 * 0.02714 * 23 22 21 37 37 H 1.07999 * 119.97571 * 180.23379 * 24 23 22 38 38 H 1.07996 * 119.98136 * 179.97438 * 27 25 24 39 39 H 1.08002 * 120.02061 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0624 -0.7733 1.1901 5 8 1.8845 -0.5256 2.3634 6 7 2.7762 -1.7925 0.6724 7 6 3.4745 -2.7995 1.4754 8 6 4.8813 -2.3348 1.7511 9 8 5.2633 -1.2677 1.3190 10 7 5.7151 -3.1049 2.4779 11 6 6.9952 -2.6824 2.7283 12 1 7.3353 -1.7324 2.3435 13 6 7.8545 -3.4761 3.4780 14 7 7.4406 -4.6320 3.9466 15 14 9.5962 -2.8970 3.8257 16 1 10.3019 -3.9146 4.6452 17 1 10.3197 -2.7059 2.5430 18 1 9.5515 -1.6101 4.5654 19 6 2.7627 -1.7751 -0.6652 20 8 3.3324 -2.5959 -1.3574 21 7 2.0483 -0.7476 -1.1587 22 6 1.8386 -0.4469 -2.5104 23 6 1.0681 0.6519 -2.8667 24 6 0.8665 0.9494 -4.2003 25 6 1.4233 0.1467 -5.1816 26 9 1.2202 0.4363 -6.4855 27 6 2.1876 -0.9526 -4.8284 28 6 2.3964 -1.2502 -3.4959 29 1 -0.3633 -1.0264 0.0508 30 1 -0.3633 0.5572 0.8635 31 1 -0.3634 0.4693 -0.9143 32 1 3.5038 -3.7427 0.9301 33 1 2.9474 -2.9414 2.4188 34 1 5.4098 -3.9584 2.8232 35 1 8.0407 -5.1863 4.4697 36 1 0.6303 1.2758 -2.1016 37 1 0.2704 1.8062 -4.4778 38 1 2.6207 -1.5777 -5.5952 39 1 2.9929 -2.1075 -3.2208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076609756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:41 Heat of formation + Delta-G solvation = -101.168520 kcal Electronic energy + Delta-G solvation = -28490.019481 eV Core-core repulsion = 24119.885351 eV Total energy + Delta-G solvation = -4370.134130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.82199 -43.89726 -40.63401 -40.04114 -39.55624 -37.67135 -36.54777 -35.91762 -33.44946 -32.78927 -32.09897 -31.02496 -29.26198 -26.85789 -25.81326 -24.49384 -24.33387 -22.59330 -22.06109 -21.05137 -20.08632 -19.27183 -18.81012 -18.60883 -17.96468 -17.47453 -17.46121 -17.08301 -16.58690 -16.50545 -16.36470 -15.91397 -15.83426 -15.62741 -15.48724 -15.29253 -14.78230 -14.63394 -14.33807 -14.21373 -14.03250 -13.61108 -13.59331 -13.40765 -13.10818 -12.91899 -12.89563 -12.53742 -12.47474 -12.16016 -11.65590 -11.61243 -11.53606 -11.42419 -11.28101 -10.41455 -10.16443 -10.13929 -9.03251 -8.54860 -6.05149 -0.06821 0.19000 0.52643 0.67378 1.33988 1.38555 1.49237 1.59840 1.77457 1.85456 2.25340 2.59521 2.70624 3.04932 3.10293 3.30064 3.35241 3.70389 3.81682 3.85348 3.94935 4.01346 4.06225 4.16339 4.19907 4.30921 4.36064 4.58126 4.69778 4.73874 4.94685 5.07110 5.17093 5.19137 5.28535 5.32350 5.32953 5.81811 5.85718 5.94359 6.15730 6.44225 6.73611 7.00074 7.37761 7.91288 8.61680 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.002845 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.166904 B = 9838.049061 C =10811.691061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.095 3.905 3 H 0.160 0.840 4 C 0.526 3.474 5 O -0.484 6.484 6 N -0.558 5.558 7 C 0.114 3.886 8 C 0.420 3.580 9 O -0.630 6.630 10 N -0.557 5.557 11 C -0.339 4.339 12 H 0.078 0.922 13 C -0.007 4.007 14 N -0.913 5.913 15 Si 0.995 3.005 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.270 1.270 19 C 0.701 3.299 20 O -0.554 6.554 21 N -0.555 5.555 22 C 0.169 3.831 23 C -0.117 4.117 24 C -0.109 4.109 25 C 0.061 3.939 26 F -0.146 7.146 27 C -0.123 4.123 28 C -0.145 4.145 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.163 8.888 -12.536 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 H 0.177 0.823 4 C 0.315 3.685 5 O -0.354 6.354 6 N -0.301 5.301 7 C -0.011 4.011 8 C 0.206 3.794 9 O -0.518 6.518 10 N -0.193 5.193 11 C -0.469 4.469 12 H 0.096 0.904 13 C -0.208 4.208 14 N -0.553 5.553 15 Si 0.818 3.182 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.196 1.196 19 C 0.405 3.595 20 O -0.429 6.429 21 N -0.282 5.282 22 C 0.076 3.924 23 C -0.137 4.137 24 C -0.128 4.128 25 C 0.041 3.959 26 F -0.124 7.124 27 C -0.142 4.142 28 C -0.166 4.166 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.166 0.834 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.589 9.074 -12.434 24.134 hybrid contribution 1.365 -0.752 0.343 1.596 sum -17.223 8.322 -12.091 22.630 Atomic orbital electron populations 1.22174 0.86624 1.04847 1.06880 1.22591 1.00382 0.98366 0.79618 0.82296 1.21337 0.76610 0.79911 0.90639 1.90791 1.58294 1.68680 1.17641 1.45943 1.47586 1.29310 1.07306 1.21396 0.90083 0.91351 0.98232 1.20824 0.88699 0.86348 0.83502 1.90497 1.78491 1.25588 1.57176 1.41795 1.11455 1.19999 1.46014 1.19618 0.88746 1.05488 1.33027 0.90360 1.26084 1.03971 0.95241 0.95499 1.69653 1.38796 1.11468 1.35337 0.84971 0.76533 0.78220 0.78516 1.19045 1.19744 1.19559 1.15906 0.79501 0.82423 0.81712 1.90865 1.48602 1.42646 1.60777 1.45009 1.50736 1.27025 1.05425 1.17686 0.98907 0.96923 0.78873 1.20985 0.99457 0.95948 0.97307 1.21254 1.00335 1.00429 0.90740 1.17859 1.02009 0.97606 0.78462 1.91488 1.93718 1.93204 1.34023 1.21104 0.99315 0.97469 0.96334 1.21275 1.01892 1.01611 0.91801 0.91623 0.87442 0.86983 0.85040 0.84294 0.76497 0.90904 0.80670 0.80750 0.83431 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.28 71.98 0.67 -0.86 16 2 C 0.10 1.84 3.36 44.37 0.15 1.99 16 3 H 0.16 2.33 8.14 -2.39 -0.02 2.32 16 4 C 0.53 15.63 7.65 87.94 0.67 16.30 16 5 O -0.48 -16.56 17.75 -2.88 -0.05 -16.61 16 6 N -0.56 -18.99 2.09 -777.22 -1.63 -20.61 16 7 C 0.11 4.14 6.18 85.63 0.53 4.67 16 8 C 0.42 20.66 7.85 87.66 0.69 21.35 16 9 O -0.63 -35.96 16.01 -3.07 -0.05 -36.01 16 10 N -0.56 -29.00 5.29 -306.99 -1.62 -30.63 16 11 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 12 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 13 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 14 N -0.91 -48.98 13.05 21.66 0.28 -48.70 16 15 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 16 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 C 0.70 23.69 8.23 179.44 1.48 25.17 16 20 O -0.55 -21.96 14.45 -3.84 -0.06 -22.01 16 21 N -0.55 -13.72 2.95 -627.43 -1.85 -15.57 16 22 C 0.17 3.64 6.55 38.12 0.25 3.89 16 23 C -0.12 -1.53 8.73 22.39 0.20 -1.33 16 24 C -0.11 -1.36 10.02 22.30 0.22 -1.13 16 25 C 0.06 1.07 7.30 22.38 0.16 1.24 16 26 F -0.15 -2.75 17.27 44.97 0.78 -1.98 16 27 C -0.12 -2.50 10.02 22.29 0.22 -2.28 16 28 C -0.15 -3.60 9.36 22.39 0.21 -3.39 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.54 5.51 -2.39 -0.01 0.53 16 32 H 0.13 4.26 7.86 -2.39 -0.02 4.24 16 33 H 0.14 4.26 8.00 -2.39 -0.02 4.24 16 34 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 35 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 36 H 0.18 1.01 5.69 -2.91 -0.02 1.00 16 37 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.14 4.19 5.41 -2.91 -0.02 4.17 16 Total: -1.00 -78.36 345.81 4.97 -73.39 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.41 Total: 26.70 kcal Atomic # 6 Polarization: 40.27 SS G_CDS: 6.73 Total: 47.00 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.82 Total: -115.50 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: -0.16 Total: -74.64 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -78.36 4.97 -73.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.776 kcal (2) G-P(sol) polarization free energy of solvation -78.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds