Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47031 * 2 1 4 4 C 1.39871 * 125.90190 * 125.02115 * 3 2 1 5 5 C 1.35311 * 107.92480 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.12945 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47448 * 94.99395 * 6 5 4 8 8 S 1.65595 * 119.99946 * 165.00237 * 7 6 5 9 9 O 1.42098 * 106.40157 * 178.54330 * 8 7 6 10 10 O 1.42103 * 106.40289 * 311.45810 * 8 7 6 11 11 C 1.76195 * 107.21979 * 64.99881 * 8 7 6 12 12 C 1.38636 * 119.75072 * 269.72660 * 11 8 7 13 13 C 1.37623 * 120.24564 * 179.72365 * 12 11 8 14 14 C 1.40710 * 119.74426 * 0.56851 * 13 12 11 15 15 C 1.41397 * 120.24357 * 179.68565 * 14 13 12 16 16 H 1.07994 * 120.00234 * 204.40938 * 15 14 13 17 17 C 1.39954 * 119.99811 * 24.40239 * 15 14 13 18 18 N 1.30824 * 119.99614 * 17.85678 * 17 15 14 19 19 Si 1.86800 * 119.99975 * 197.84523 * 17 15 14 20 20 H 1.48505 * 109.46827 * 60.00591 * 19 17 15 21 21 H 1.48498 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47420 * 300.00818 * 19 17 15 23 23 C 1.40712 * 119.51376 * 359.70902 * 14 13 12 24 24 C 1.37616 * 119.74577 * 359.97438 * 23 14 13 25 25 N 1.34944 * 107.74479 * 359.97438 * 5 4 3 26 26 H 0.97003 * 126.04402 * 180.02562 * 25 5 4 27 27 N 1.30841 * 125.89774 * 304.97934 * 3 2 1 28 28 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46767 * 299.99513 * 1 2 3 30 30 H 1.08998 * 109.47148 * 60.00187 * 1 2 3 31 31 H 1.09005 * 109.47058 * 240.00523 * 2 1 3 32 32 H 1.08998 * 109.47606 * 120.00084 * 2 1 3 33 33 H 1.08007 * 126.03284 * 359.94128 * 4 3 2 34 34 H 1.08998 * 109.47122 * 214.99765 * 6 5 4 35 35 H 1.09001 * 109.46866 * 334.99443 * 6 5 4 36 36 H 0.97001 * 119.99731 * 345.00189 * 7 6 5 37 37 H 1.07999 * 119.87445 * 359.97438 * 12 11 8 38 38 H 1.08006 * 120.12426 * 180.28039 * 13 12 11 39 39 H 0.97001 * 119.99590 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.12943 * 179.97438 * 23 14 13 41 41 H 1.07996 * 119.87579 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9187 1.9774 0.9279 5 6 3.1222 3.2706 0.5855 6 6 4.0077 4.2524 1.3086 7 7 5.3276 4.2794 0.6734 8 16 6.3809 5.5134 1.0051 9 8 7.5664 5.2370 0.2720 10 8 5.6432 6.7197 0.8636 11 6 6.8095 5.3894 2.7096 12 6 6.0541 6.0595 3.6594 13 6 6.3764 5.9652 4.9941 14 6 7.4845 5.1945 5.3919 15 6 7.8290 5.0956 6.7597 16 1 8.8441 4.8626 7.0454 17 6 6.8546 5.2999 7.7433 18 7 5.5860 5.2344 7.4307 19 14 7.3655 5.6657 9.5024 20 1 8.1739 6.9111 9.5342 21 1 6.1542 5.8397 10.3437 22 1 8.1747 4.5368 10.0279 23 6 8.2474 4.5233 4.4185 24 6 7.9029 4.6266 3.0902 25 7 2.3910 3.5233 -0.5201 26 1 2.3418 4.3701 -0.9907 27 7 1.7152 2.3466 -0.8684 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.3620 1.4654 1.7693 34 1 3.5619 5.2459 1.2627 35 1 4.1120 3.9487 2.3503 36 1 5.5844 3.5745 0.0585 37 1 5.2072 6.6546 3.3512 38 1 5.7839 6.4844 5.7328 39 1 4.9106 5.3756 8.1125 40 1 9.1002 3.9294 4.7127 41 1 8.4867 4.1120 2.3414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080759375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = -23.414301 kcal Electronic energy + Delta-G solvation = -25663.853618 eV Core-core repulsion = 21863.304340 eV Total energy + Delta-G solvation = -3800.549278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29736 -39.35654 -38.18537 -36.82271 -36.62449 -35.78152 -34.90523 -32.04499 -31.27952 -31.24764 -31.03598 -27.60195 -26.80722 -24.97774 -23.28998 -22.92542 -21.63801 -20.60947 -20.39244 -19.39854 -19.05556 -18.53678 -17.92397 -17.20167 -16.99021 -16.10247 -15.83346 -15.54748 -15.38980 -15.12089 -15.06149 -14.91301 -14.83496 -14.28331 -14.07358 -13.94684 -13.74898 -13.56525 -13.30590 -13.12925 -13.03545 -12.89211 -12.87794 -12.72901 -12.57080 -12.27103 -12.14147 -12.00432 -11.55646 -11.49755 -11.33282 -11.20258 -10.52456 -10.32590 -9.77950 -9.68805 -9.52107 -8.85652 -6.62780 -0.38704 0.50420 0.78492 1.09087 1.37533 1.45560 1.50857 1.71683 1.87355 2.12708 2.30421 2.55535 2.92163 3.37205 3.54992 3.63902 3.73958 3.96534 4.24969 4.34257 4.35846 4.44059 4.45338 4.55894 4.71179 4.74750 4.86869 4.90388 4.96983 5.07128 5.12668 5.13415 5.26579 5.27125 5.39061 5.54861 5.62385 5.69107 5.78477 5.95206 6.04014 6.18402 6.31790 6.51440 6.67860 6.70685 6.83446 8.08848 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.003118 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.294805 B = 8977.069620 C =10653.743466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.069 3.931 4 C -0.259 4.259 5 C 0.084 3.916 6 C 0.181 3.819 7 N -1.108 6.108 8 S 2.731 3.269 9 O -1.000 7.000 10 O -0.998 6.998 11 C -0.796 4.796 12 C -0.018 4.018 13 C -0.207 4.207 14 C 0.112 3.888 15 C -0.466 4.466 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.791 5.791 19 Si 0.988 3.012 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.256 1.256 23 C -0.258 4.258 24 C -0.001 4.001 25 N -0.467 5.467 26 H 0.447 0.553 27 N -0.310 5.310 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.424 0.576 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.299 0.701 40 H 0.109 0.891 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -7.294 -6.982 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.097 4.097 4 C -0.289 4.289 5 C -0.047 4.047 6 C 0.054 3.946 7 N -0.869 5.869 8 S 2.827 3.173 9 O -0.991 6.991 10 O -0.989 6.989 11 C -0.889 4.889 12 C -0.038 4.038 13 C -0.227 4.227 14 C 0.108 3.892 15 C -0.493 4.493 16 H 0.108 0.892 17 C -0.183 4.183 18 N -0.414 5.414 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.279 4.279 24 C -0.020 4.020 25 N -0.177 5.177 26 H 0.292 0.708 27 N -0.134 5.134 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.179 0.821 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.259 0.741 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.746 -6.242 -8.437 13.662 hybrid contribution 0.774 -0.001 1.703 1.871 sum -7.973 -6.244 -6.733 12.161 Atomic orbital electron populations 1.21679 0.94056 1.02745 1.01539 1.20131 0.96569 0.87122 1.04514 1.22820 0.96452 0.97448 0.92944 1.21553 1.07548 0.93968 1.05848 1.20941 0.96587 0.96430 0.90758 1.19832 0.79981 0.98459 0.96335 1.55417 1.26452 1.45084 1.59907 1.00165 0.71651 0.72258 0.73265 1.93476 1.47808 1.85458 1.72312 1.93466 1.73191 1.45207 1.86990 1.29565 1.13244 1.23807 1.22327 1.20472 0.96205 0.94340 0.92832 1.21363 1.02118 1.04333 0.94901 1.18193 0.90491 0.86766 0.93730 1.20203 0.97683 1.40214 0.91166 0.89237 1.26934 0.94006 0.91049 1.06316 1.69823 1.02337 1.30485 1.38731 0.85146 0.79259 0.80144 0.74724 1.18467 1.18747 1.17968 1.21270 1.05336 1.07856 0.93391 1.20444 0.92856 0.92855 0.95877 1.46375 1.36256 1.12406 1.22654 0.70753 1.77217 1.19940 0.92183 1.24088 0.90230 0.93310 0.93356 0.89393 0.88254 0.82090 0.88324 0.88235 0.74056 0.86220 0.87048 0.89002 0.87281 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.87 71.98 0.71 -1.40 16 2 C -0.04 -0.70 6.51 29.85 0.19 -0.50 16 3 C 0.07 1.55 6.49 43.10 0.28 1.83 16 4 C -0.26 -5.88 10.64 21.99 0.23 -5.65 16 5 C 0.08 1.91 6.60 41.40 0.27 2.19 16 6 C 0.18 4.33 6.76 85.63 0.58 4.91 16 7 N -1.11 -28.65 5.99 -190.80 -1.14 -29.80 16 8 S 2.73 93.89 5.73 -56.49 -0.32 93.57 16 9 O -1.00 -38.70 17.26 -128.00 -2.21 -40.91 16 10 O -1.00 -38.06 16.72 -128.00 -2.14 -40.20 16 11 C -0.80 -32.50 5.97 22.46 0.13 -32.37 16 12 C -0.02 -0.81 9.49 22.22 0.21 -0.60 16 13 C -0.21 -10.11 8.70 22.73 0.20 -9.92 16 14 C 0.11 5.60 5.57 -21.29 -0.12 5.48 16 15 C -0.47 -22.64 9.06 23.46 0.21 -22.43 16 16 H 0.09 4.13 7.91 -2.91 -0.02 4.11 16 17 C 0.04 1.65 5.14 85.26 0.44 2.09 16 18 N -0.79 -36.52 10.95 21.83 0.24 -36.28 16 19 Si 0.99 33.60 29.60 68.60 2.03 35.63 16 20 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 21 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 22 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 23 C -0.26 -11.94 9.80 22.73 0.22 -11.72 16 24 C 0.00 -0.02 9.49 22.22 0.21 0.19 16 25 N -0.47 -10.39 7.36 -48.01 -0.35 -10.75 16 26 H 0.45 7.93 8.96 -213.32 -1.91 6.02 16 27 N -0.31 -7.67 12.67 -47.38 -0.60 -8.27 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 33 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.10 2.22 7.75 -2.39 -0.02 2.20 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.42 9.47 8.64 -96.74 -0.84 8.64 16 37 H 0.12 4.69 7.59 -2.91 -0.02 4.67 16 38 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 39 H 0.30 12.27 8.30 -92.71 -0.77 11.50 16 40 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.12 4.67 7.60 -2.91 -0.02 4.65 16 Total: -1.00 -63.60 365.55 -2.38 -65.98 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -1.66 Total: 38.91 kcal Atomic # 6 Polarization: -71.67 SS G_CDS: 3.78 Total: -67.89 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.86 Total: -85.09 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: -4.35 Total: -81.11 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Atomic # 16 Polarization: 93.89 SS G_CDS: -0.32 Total: 93.57 kcal Total: -63.60 -2.38 -65.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080759375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.568 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds