Wall clock time and date at job start Tue Mar 31 2020 19:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 N 1.46506 * 109.47319 * 120.00084 * 2 1 3 5 5 S 1.65595 * 120.00108 * 264.99871 * 4 2 1 6 6 O 1.42106 * 106.40041 * 311.46064 * 5 4 2 7 7 O 1.42094 * 106.40303 * 178.53915 * 5 4 2 8 8 C 1.76208 * 107.21711 * 64.99631 * 5 4 2 9 9 C 1.38630 * 119.74372 * 90.00149 * 8 5 4 10 10 C 1.37623 * 120.24117 * 180.27329 * 9 8 5 11 11 C 1.40707 * 119.74849 * 359.52215 * 10 9 8 12 12 C 1.41400 * 120.24843 * 180.22492 * 11 10 9 13 13 H 1.07994 * 120.00480 * 204.52708 * 12 11 10 14 14 C 1.39950 * 119.99509 * 24.53120 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.72383 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.72017 * 14 12 11 17 17 H 1.48499 * 109.47128 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46931 * 119.99981 * 16 14 12 19 19 H 1.48490 * 109.47155 * 239.99623 * 16 14 12 20 20 C 1.40715 * 119.51064 * 0.47652 * 11 10 9 21 21 C 1.37618 * 119.74364 * 359.74989 * 20 11 10 22 22 C 1.50703 * 109.47294 * 239.99893 * 2 1 3 23 23 C 1.39871 * 126.04139 * 280.03240 * 22 2 1 24 24 N 1.30829 * 108.20527 * 179.97438 * 23 22 2 25 25 N 1.40089 * 108.20452 * 359.97438 * 24 23 22 26 26 C 1.46499 * 126.03508 * 180.02562 * 25 24 23 27 27 C 1.34946 * 107.92352 * 359.76131 * 25 24 23 28 28 H 1.09002 * 109.46625 * 300.00171 * 1 2 3 29 29 H 1.08997 * 109.47271 * 59.99937 * 1 2 3 30 30 H 1.08994 * 109.47272 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99721 * 84.99507 * 4 2 1 32 32 H 1.08001 * 119.88189 * 0.02562 * 9 8 5 33 33 H 1.08002 * 120.12205 * 179.72192 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.12804 * 179.73261 * 20 11 10 36 36 H 1.08002 * 119.87235 * 180.02562 * 21 20 11 37 37 H 1.08000 * 125.89404 * 359.97438 * 23 22 2 38 38 H 1.08992 * 109.47504 * 89.98046 * 26 25 24 39 39 H 1.09007 * 109.47155 * 209.97640 * 26 25 24 40 40 H 1.08997 * 109.47393 * 329.97213 * 26 25 24 41 41 H 1.07997 * 126.12630 * 180.23811 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4123 0.1771 2.5505 6 8 3.2437 1.2442 2.1155 7 8 2.8125 -0.7698 3.5314 8 6 0.9275 0.9147 3.1474 9 6 0.1403 0.2328 4.0623 10 6 -1.0242 0.7969 4.5310 11 6 -1.4095 2.0749 4.0858 12 6 -2.6014 2.6664 4.5641 13 1 -3.1056 3.4179 3.9747 14 6 -3.1276 2.2781 5.8014 15 7 -2.3728 1.6486 6.6648 16 14 -4.9078 2.6588 6.2201 17 1 -5.5422 3.3724 5.0827 18 1 -5.6377 1.3914 6.4776 19 1 -4.9591 3.5145 7.4326 20 6 -0.6025 2.7577 3.1570 21 6 0.5554 2.1724 2.6983 22 6 2.0324 -0.7104 -1.2305 23 6 2.1209 -2.0957 -1.4024 24 7 2.6014 -2.3295 -2.5966 25 7 2.8336 -1.0984 -3.2236 26 6 3.3694 -0.9063 -4.5735 27 6 2.4711 -0.1210 -2.3667 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.1109 -1.6562 1.1949 32 1 0.4399 -0.7465 4.4055 33 1 -1.6384 0.2620 5.2403 34 1 -2.7377 1.3791 7.5222 35 1 -0.8910 3.7373 2.8053 36 1 1.1765 2.6948 1.9857 37 1 1.8410 -2.8432 -0.6749 38 1 2.5480 -0.8729 -5.2891 39 1 3.9248 0.0308 -4.6140 40 1 4.0342 -1.7336 -4.8218 41 1 2.5244 0.9414 -2.5533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080761591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:48 Heat of formation + Delta-G solvation = 14.131819 kcal Electronic energy + Delta-G solvation = -26239.992913 eV Core-core repulsion = 22441.071757 eV Total energy + Delta-G solvation = -3798.921156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32163 -37.58653 -36.59355 -36.06141 -35.07213 -34.02576 -33.07651 -30.60742 -30.24688 -29.47396 -28.76225 -26.73203 -25.78451 -22.93949 -21.49194 -21.31384 -21.10811 -20.14568 -18.73447 -17.62476 -17.41305 -16.98430 -16.33293 -15.63755 -15.53132 -15.24779 -14.53535 -14.39971 -14.09776 -13.91474 -13.48073 -13.28890 -13.18572 -12.94941 -12.74875 -12.65101 -12.45197 -12.18267 -11.99359 -11.71283 -11.47509 -11.42869 -11.29315 -11.27784 -11.17812 -11.09802 -10.84916 -10.47071 -10.39460 -9.76253 -9.65582 -9.52843 -9.47484 -9.07807 -8.46154 -7.93218 -7.67700 -7.12502 -4.78347 1.28699 1.78481 2.27513 2.39352 2.71188 2.88379 2.90642 2.94395 2.95868 3.67093 3.80137 4.26074 4.33332 4.58773 4.73247 4.87074 4.91977 5.11750 5.16896 5.23180 5.30012 5.40425 5.54350 5.63381 5.79243 5.87589 6.08000 6.14385 6.15635 6.47251 6.49556 6.63728 6.70013 6.72996 6.86981 6.94372 7.06321 7.34361 7.38007 7.45136 7.58215 7.66264 7.78913 7.98748 8.34163 8.53270 8.66866 9.78968 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002936 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.369647 B = 9534.299791 C =10217.468463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.233 3.767 3 H 0.093 0.907 4 N -1.118 6.118 5 S 2.693 3.307 6 O -0.987 6.987 7 O -0.985 6.985 8 C -0.784 4.784 9 C -0.012 4.012 10 C -0.184 4.184 11 C 0.140 3.860 12 C -0.436 4.436 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.916 3.084 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.238 4.238 21 C 0.002 3.998 22 C -0.231 4.231 23 C 0.060 3.940 24 N -0.300 5.300 25 N -0.380 5.380 26 C 0.103 3.897 27 C 0.062 3.938 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.289 0.711 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.182 0.818 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -3.281 -15.270 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.125 3.875 3 H 0.111 0.889 4 N -0.873 5.873 5 S 2.792 3.208 6 O -0.977 6.977 7 O -0.976 6.976 8 C -0.880 4.880 9 C -0.033 4.033 10 C -0.204 4.204 11 C 0.136 3.864 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.387 5.387 16 Si 0.739 3.261 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.196 1.196 20 C -0.258 4.258 21 C -0.019 4.019 22 C -0.244 4.244 23 C -0.127 4.127 24 N -0.121 5.121 25 N -0.162 5.162 26 C -0.038 4.038 27 C -0.084 4.084 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.199 0.801 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.872 -3.996 -15.692 16.909 hybrid contribution -1.723 0.535 0.889 2.012 sum 3.149 -3.460 -14.802 15.524 Atomic orbital electron populations 1.22371 0.94461 1.02818 1.03202 1.18806 0.93493 0.94817 0.80431 0.88942 1.55808 1.84338 1.19202 1.28002 1.01210 0.74878 0.72873 0.71862 1.93475 1.66173 1.55964 1.82076 1.93495 1.82677 1.63033 1.58369 1.29127 1.26788 1.09656 1.22448 1.20240 0.93346 0.96968 0.92711 1.21333 0.98120 0.96276 1.04711 1.17842 0.90335 0.90326 0.87850 1.19958 1.05976 1.18595 1.01808 0.89473 1.26139 1.00237 0.92865 0.95794 1.69834 1.36743 1.26124 1.06006 0.86124 0.81036 0.79448 0.79500 1.18009 1.19273 1.19563 1.21008 0.97510 1.00174 1.07157 1.20134 0.94681 0.92023 0.95017 1.20207 1.12971 0.93661 0.97554 1.23678 0.98567 0.95991 0.94424 1.77337 1.22507 1.03391 1.08903 1.48437 1.50238 1.03963 1.13573 1.21825 0.99520 1.03602 0.78879 1.22319 0.99875 0.95553 0.90697 0.90188 0.92137 0.92262 0.75890 0.87925 0.86094 0.90019 0.88286 0.87906 0.80116 0.90880 0.89482 0.89429 0.80654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.50 37.16 0.35 -1.87 16 2 C 0.23 3.09 3.34 -69.08 -0.23 2.86 16 3 H 0.09 1.24 7.50 -51.93 -0.39 0.85 16 4 N -1.12 -16.33 5.46 -5.88 -0.03 -16.36 16 5 S 2.69 51.11 5.71 -107.50 -0.61 50.50 16 6 O -0.99 -20.63 16.60 -57.17 -0.95 -21.58 16 7 O -0.99 -21.18 17.26 -57.17 -0.99 -22.17 16 8 C -0.78 -16.59 5.08 -39.29 -0.20 -16.79 16 9 C -0.01 -0.28 9.49 -39.66 -0.38 -0.66 16 10 C -0.18 -4.50 8.70 -38.87 -0.34 -4.84 16 11 C 0.14 3.45 5.57 -106.83 -0.60 2.86 16 12 C -0.44 -10.49 9.06 -37.74 -0.34 -10.84 16 13 H 0.09 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 15 N -0.76 -18.23 10.95 55.55 0.61 -17.63 16 16 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 16 17 H -0.26 -4.67 7.11 56.52 0.40 -4.26 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 20 C -0.24 -5.39 9.80 -38.87 -0.38 -5.77 16 21 C 0.00 0.03 8.55 -39.66 -0.34 -0.31 16 22 C -0.23 -2.81 5.09 -105.05 -0.53 -3.35 16 23 C 0.06 0.73 11.28 -17.37 -0.20 0.53 16 24 N -0.30 -3.87 12.58 30.62 0.39 -3.49 16 25 N -0.38 -4.02 4.01 -68.17 -0.27 -4.29 16 26 C 0.10 0.62 11.47 59.85 0.69 1.31 16 27 C 0.06 0.65 11.40 -17.23 -0.20 0.46 16 28 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.41 5.09 7.88 -34.47 -0.27 4.82 16 32 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 33 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 34 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.10 1.95 7.60 -52.49 -0.40 1.55 16 37 H 0.18 1.80 7.68 -52.49 -0.40 1.39 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -32.23 360.56 -9.25 -41.48 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.01 Total: 11.12 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: -2.78 Total: -34.85 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.69 Total: -41.77 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.94 Total: -43.75 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 51.11 SS G_CDS: -0.61 Total: 50.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.23 -9.25 -41.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080761591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds