Wall clock time and date at job start Tue Mar 31 2020 19:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 N 1.46506 * 109.47319 * 120.00084 * 2 1 3 5 5 S 1.65595 * 120.00108 * 264.99871 * 4 2 1 6 6 O 1.42106 * 106.40041 * 311.46064 * 5 4 2 7 7 O 1.42094 * 106.40303 * 178.53915 * 5 4 2 8 8 C 1.76208 * 107.21711 * 64.99631 * 5 4 2 9 9 C 1.38630 * 119.74372 * 90.00149 * 8 5 4 10 10 C 1.37623 * 120.24117 * 180.27329 * 9 8 5 11 11 C 1.40707 * 119.74849 * 359.52215 * 10 9 8 12 12 C 1.41400 * 120.24843 * 180.22492 * 11 10 9 13 13 H 1.07994 * 120.00480 * 204.52708 * 12 11 10 14 14 C 1.39950 * 119.99509 * 24.53120 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.72383 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.72017 * 14 12 11 17 17 H 1.48499 * 109.47128 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46931 * 119.99981 * 16 14 12 19 19 H 1.48490 * 109.47155 * 239.99623 * 16 14 12 20 20 C 1.40715 * 119.51064 * 0.47652 * 11 10 9 21 21 C 1.37618 * 119.74364 * 359.74989 * 20 11 10 22 22 C 1.50703 * 109.47294 * 239.99893 * 2 1 3 23 23 C 1.39871 * 126.04139 * 280.03240 * 22 2 1 24 24 N 1.30829 * 108.20527 * 179.97438 * 23 22 2 25 25 N 1.40089 * 108.20452 * 359.97438 * 24 23 22 26 26 C 1.46499 * 126.03508 * 180.02562 * 25 24 23 27 27 C 1.34946 * 107.92352 * 359.76131 * 25 24 23 28 28 H 1.09002 * 109.46625 * 300.00171 * 1 2 3 29 29 H 1.08997 * 109.47271 * 59.99937 * 1 2 3 30 30 H 1.08994 * 109.47272 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99721 * 84.99507 * 4 2 1 32 32 H 1.08001 * 119.88189 * 0.02562 * 9 8 5 33 33 H 1.08002 * 120.12205 * 179.72192 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08002 * 120.12804 * 179.73261 * 20 11 10 36 36 H 1.08002 * 119.87235 * 180.02562 * 21 20 11 37 37 H 1.08000 * 125.89404 * 359.97438 * 23 22 2 38 38 H 1.08992 * 109.47504 * 89.98046 * 26 25 24 39 39 H 1.09007 * 109.47155 * 209.97640 * 26 25 24 40 40 H 1.08997 * 109.47393 * 329.97213 * 26 25 24 41 41 H 1.07997 * 126.12630 * 180.23811 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4123 0.1771 2.5505 6 8 3.2437 1.2442 2.1155 7 8 2.8125 -0.7698 3.5314 8 6 0.9275 0.9147 3.1474 9 6 0.1403 0.2328 4.0623 10 6 -1.0242 0.7969 4.5310 11 6 -1.4095 2.0749 4.0858 12 6 -2.6014 2.6664 4.5641 13 1 -3.1056 3.4179 3.9747 14 6 -3.1276 2.2781 5.8014 15 7 -2.3728 1.6486 6.6648 16 14 -4.9078 2.6588 6.2201 17 1 -5.5422 3.3724 5.0827 18 1 -5.6377 1.3914 6.4776 19 1 -4.9591 3.5145 7.4326 20 6 -0.6025 2.7577 3.1570 21 6 0.5554 2.1724 2.6983 22 6 2.0324 -0.7104 -1.2305 23 6 2.1209 -2.0957 -1.4024 24 7 2.6014 -2.3295 -2.5966 25 7 2.8336 -1.0984 -3.2236 26 6 3.3694 -0.9063 -4.5735 27 6 2.4711 -0.1210 -2.3667 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 2.1109 -1.6562 1.1949 32 1 0.4399 -0.7465 4.4055 33 1 -1.6384 0.2620 5.2403 34 1 -2.7377 1.3791 7.5222 35 1 -0.8910 3.7373 2.8053 36 1 1.1765 2.6948 1.9857 37 1 1.8410 -2.8432 -0.6749 38 1 2.5480 -0.8729 -5.2891 39 1 3.9248 0.0308 -4.6140 40 1 4.0342 -1.7336 -4.8218 41 1 2.5244 0.9414 -2.5533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080761591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:48 Heat of formation + Delta-G solvation = -7.601398 kcal Electronic energy + Delta-G solvation = -26240.935336 eV Core-core repulsion = 22441.071757 eV Total energy + Delta-G solvation = -3799.863579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14792 -39.34312 -38.15037 -37.25368 -36.72655 -35.75619 -33.82230 -32.01653 -31.63331 -31.23367 -29.74241 -27.60084 -27.37405 -23.94424 -23.21821 -22.91712 -22.11472 -21.07352 -20.18228 -19.37619 -18.64199 -18.38384 -17.73882 -17.12952 -16.63087 -16.28555 -15.90810 -15.68093 -15.24135 -15.12381 -14.95140 -14.87848 -14.27440 -14.09060 -13.92812 -13.68568 -13.62336 -13.47477 -13.33541 -13.11591 -13.05908 -12.98218 -12.90132 -12.81766 -12.54635 -12.42696 -12.25012 -11.95884 -11.49309 -11.42138 -11.30208 -11.16884 -10.42861 -10.32092 -9.71407 -9.46736 -9.31590 -8.83210 -6.59757 -0.25061 0.54811 0.97607 1.13008 1.37585 1.43549 1.54475 1.73037 1.80745 2.13392 2.34098 2.60170 3.00810 3.56412 3.59822 3.73014 4.03113 4.15110 4.31598 4.35618 4.37911 4.42537 4.48731 4.52549 4.66465 4.74049 4.86615 4.93826 4.95481 4.99751 5.10322 5.17580 5.29973 5.42748 5.51995 5.58668 5.66248 5.68785 5.83550 5.99147 6.16274 6.21493 6.25973 6.55400 6.74110 6.74609 6.87360 8.11929 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002936 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.369647 B = 9534.299791 C =10217.468463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.234 3.766 3 H 0.094 0.906 4 N -1.104 6.104 5 S 2.723 3.277 6 O -1.001 7.001 7 O -1.010 7.010 8 C -0.787 4.787 9 C -0.018 4.018 10 C -0.208 4.208 11 C 0.114 3.886 12 C -0.467 4.467 13 H 0.092 0.908 14 C 0.033 3.967 15 N -0.801 5.801 16 Si 0.990 3.010 17 H -0.252 1.252 18 H -0.263 1.263 19 H -0.265 1.265 20 C -0.252 4.252 21 C 0.005 3.995 22 C -0.252 4.252 23 C 0.050 3.950 24 N -0.332 5.332 25 N -0.379 5.379 26 C 0.093 3.907 27 C 0.071 3.929 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.420 0.580 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.297 0.703 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.193 0.807 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -2.758 -17.201 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.127 3.873 3 H 0.112 0.888 4 N -0.863 5.863 5 S 2.819 3.181 6 O -0.991 6.991 7 O -1.000 7.000 8 C -0.880 4.880 9 C -0.038 4.038 10 C -0.229 4.229 11 C 0.110 3.890 12 C -0.494 4.494 13 H 0.110 0.890 14 C -0.186 4.186 15 N -0.424 5.424 16 Si 0.809 3.191 17 H -0.175 1.175 18 H -0.188 1.188 19 H -0.189 1.189 20 C -0.273 4.273 21 C -0.015 4.015 22 C -0.266 4.266 23 C -0.135 4.135 24 N -0.154 5.154 25 N -0.161 5.161 26 C -0.047 4.047 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.256 0.744 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.209 0.791 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.994 -3.477 -17.630 18.651 hybrid contribution -1.608 0.329 1.320 2.106 sum 3.386 -3.148 -16.310 16.953 Atomic orbital electron populations 1.22324 0.94459 1.02937 1.02765 1.18877 0.93423 0.94880 0.80145 0.88801 1.55406 1.84046 1.19767 1.27090 1.00293 0.73634 0.72260 0.71896 1.93454 1.66226 1.57009 1.82376 1.93458 1.82861 1.63508 1.60202 1.29542 1.26961 1.09853 1.21691 1.20405 0.93084 0.97452 0.92866 1.21329 0.99132 0.96815 1.05576 1.18178 0.91259 0.90717 0.88817 1.20233 1.06663 1.19654 1.02840 0.88992 1.27012 1.04253 0.92191 0.95104 1.69877 1.38731 1.27131 1.06710 0.85029 0.75394 0.79335 0.79299 1.17471 1.18754 1.18936 1.21233 0.98006 1.00825 1.07191 1.20407 0.94327 0.91942 0.94831 1.20109 1.14987 0.93719 0.97748 1.23939 0.98450 0.96502 0.94646 1.77287 1.23618 1.05068 1.09453 1.48813 1.49343 1.03271 1.14716 1.22197 1.00336 1.05093 0.77060 1.22831 0.98003 0.96950 0.89952 0.92739 0.90356 0.91930 0.74406 0.87115 0.87521 0.89236 0.87021 0.85418 0.79055 0.89456 0.86762 0.89277 0.77469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.50 71.98 0.68 -3.43 16 2 C 0.23 5.77 3.34 44.24 0.15 5.92 16 3 H 0.09 2.30 7.50 -2.39 -0.02 2.28 16 4 N -1.10 -30.65 5.46 -172.51 -0.94 -31.60 16 5 S 2.72 100.49 5.71 -56.49 -0.32 100.17 16 6 O -1.00 -40.15 16.60 -128.00 -2.12 -42.28 16 7 O -1.01 -42.73 17.26 -128.00 -2.21 -44.94 16 8 C -0.79 -33.11 5.08 22.46 0.11 -33.00 16 9 C -0.02 -0.83 9.49 22.22 0.21 -0.62 16 10 C -0.21 -10.56 8.70 22.73 0.20 -10.36 16 11 C 0.11 5.76 5.57 -21.29 -0.12 5.64 16 12 C -0.47 -23.00 9.06 23.46 0.21 -22.78 16 13 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 14 C 0.03 1.54 5.14 85.26 0.44 1.98 16 15 N -0.80 -39.26 10.95 21.83 0.24 -39.02 16 16 Si 0.99 34.59 29.59 68.60 2.03 36.62 16 17 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 18 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 C -0.25 -11.52 9.80 22.73 0.22 -11.29 16 21 C 0.00 0.19 8.55 22.22 0.19 0.38 16 22 C -0.25 -5.60 5.09 -20.14 -0.10 -5.70 16 23 C 0.05 1.15 11.28 85.24 0.96 2.11 16 24 N -0.33 -8.06 12.58 -57.03 -0.72 -8.78 16 25 N -0.38 -7.07 4.01 -369.58 -1.48 -8.55 16 26 C 0.09 0.84 11.47 127.77 1.47 2.31 16 27 C 0.07 1.27 11.40 83.54 0.95 2.23 16 28 H 0.05 1.64 6.16 -2.39 -0.01 1.63 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.42 9.89 7.88 -96.74 -0.76 9.13 16 32 H 0.11 4.80 7.60 -2.91 -0.02 4.77 16 33 H 0.11 5.61 6.16 -2.91 -0.02 5.59 16 34 H 0.30 12.96 8.30 -92.70 -0.77 12.19 16 35 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 36 H 0.13 4.61 7.60 -2.91 -0.02 4.59 16 37 H 0.19 3.60 7.68 -2.91 -0.02 3.58 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -69.90 360.56 0.35 -69.55 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.30 Total: 35.44 kcal Atomic # 6 Polarization: -72.20 SS G_CDS: 5.58 Total: -66.62 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -2.90 Total: -87.94 kcal Atomic # 8 Polarization: -82.88 SS G_CDS: -4.33 Total: -87.21 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 16 Polarization: 100.49 SS G_CDS: -0.32 Total: 100.17 kcal Total: -69.90 0.35 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080761591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.947 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds