Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50699 * 109.47140 * 2 1 4 4 C 1.38261 * 120.00018 * 270.02228 * 3 2 1 5 5 C 1.38207 * 119.99937 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.00087 * 359.76309 * 5 4 3 7 7 C 1.38221 * 119.99871 * 0.46535 * 6 5 4 8 8 S 1.76204 * 119.99729 * 179.78476 * 7 6 5 9 9 O 1.42104 * 106.39598 * 156.18590 * 8 7 6 10 10 O 1.42098 * 106.40117 * 23.27177 * 8 7 6 11 11 N 1.65594 * 107.22039 * 269.72612 * 8 7 6 12 12 C 1.39989 * 119.99656 * 65.00173 * 11 8 7 13 13 C 1.40432 * 125.97226 * 180.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.70499 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97824 * 359.97438 * 12 11 8 26 26 C 1.38209 * 119.99908 * 89.99581 * 3 2 1 27 27 H 1.08995 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47030 * 300.00135 * 1 2 3 29 29 H 1.09003 * 109.46708 * 60.00118 * 1 2 3 30 30 H 1.09001 * 109.47030 * 239.99865 * 2 1 3 31 31 H 1.09003 * 109.46708 * 119.99882 * 2 1 3 32 32 H 1.07996 * 119.99673 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00116 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.00326 * 180.25571 * 6 5 4 35 35 H 0.96996 * 120.00453 * 245.00506 * 11 8 7 36 36 H 1.07997 * 126.07138 * 0.02562 * 13 12 11 37 37 H 1.07992 * 126.07316 * 180.25997 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 41 41 H 1.08002 * 120.00355 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0727 -1.1974 5 6 2.7236 3.3756 -1.1974 6 6 2.9503 4.0286 -0.0001 7 6 2.7249 3.3753 1.1970 8 16 3.0193 4.2058 2.7229 9 8 2.2116 3.5565 3.6952 10 8 2.9345 5.5968 2.4455 11 7 4.5920 3.9085 3.1474 12 6 5.6358 4.3984 2.3536 13 6 7.0080 4.2215 2.5940 14 6 7.6863 4.8381 1.5995 15 7 6.7828 5.3936 0.7648 16 6 7.0873 6.1613 -0.4452 17 6 6.3774 5.5449 -1.6231 18 1 5.7608 4.6692 -1.4841 19 6 6.5151 6.0989 -2.8781 20 7 7.2616 7.1685 -3.0464 21 14 5.6346 5.3354 -4.3380 22 1 5.9384 6.1170 -5.5635 23 1 6.0956 3.9350 -4.5169 24 1 4.1699 5.3469 -4.0939 25 7 5.5031 5.1025 1.2542 26 6 2.2627 2.0723 1.1969 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0825 1.5636 -2.1326 33 1 2.9037 3.8847 -2.1326 34 1 3.3068 5.0481 0.0000 35 1 4.7901 3.3948 3.9460 36 1 7.4442 3.6837 3.4227 37 1 8.7601 4.8808 1.4936 38 1 8.1627 6.1491 -0.6223 39 1 6.7518 7.1903 -0.3167 40 1 7.7187 7.5652 -2.2884 41 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080940332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = 20.667492 kcal Electronic energy + Delta-G solvation = -26992.342638 eV Core-core repulsion = 23193.704890 eV Total energy + Delta-G solvation = -3798.637748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63422 -39.30262 -37.11771 -35.74090 -35.33667 -34.22660 -33.64259 -31.13721 -30.72183 -29.61846 -29.34523 -26.31808 -24.04166 -23.23964 -23.17639 -21.30333 -21.02145 -20.76391 -18.82806 -17.55989 -17.47399 -17.14417 -16.76557 -15.90267 -15.79314 -15.24428 -14.69876 -14.54484 -14.35306 -13.90359 -13.75977 -13.60998 -13.43895 -13.25665 -13.05334 -12.67892 -12.29252 -12.15916 -12.00867 -11.97299 -11.90577 -11.87604 -11.75417 -11.38012 -11.28008 -11.11801 -10.89867 -10.78679 -10.44830 -10.23578 -10.03778 -9.23761 -9.10812 -8.66706 -8.64598 -8.45606 -7.74212 -6.63503 -4.37983 0.41412 0.98950 1.45532 2.54048 2.72794 3.21945 3.29646 3.30469 3.44489 3.50829 3.62156 3.93153 4.33364 4.44107 4.69715 4.81163 4.92059 5.01513 5.12765 5.14555 5.20291 5.27638 5.38163 5.45563 5.56982 5.70922 5.74131 5.91984 5.96478 6.01462 6.03003 6.11897 6.17506 6.32123 6.40978 6.45418 6.58187 6.63873 6.89834 7.01794 7.21878 7.57909 7.68782 8.26117 8.31737 8.54071 9.30022 10.74261 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.005494 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.085783 B = 5094.946326 C = 7183.347243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.116 4.116 4 C -0.061 4.061 5 C -0.135 4.135 6 C 0.013 3.987 7 C -0.671 4.671 8 S 2.693 3.307 9 O -0.963 6.963 10 O -0.931 6.931 11 N -1.015 6.015 12 C 0.278 3.722 13 C -0.303 4.303 14 C 0.068 3.932 15 N -0.311 5.311 16 C 0.247 3.753 17 C -0.607 4.607 18 H 0.066 0.934 19 C 0.026 3.974 20 N -0.903 5.903 21 Si 1.069 2.931 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.283 1.283 25 N -0.299 5.299 26 C -0.023 4.023 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.430 0.570 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -12.446 8.217 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.117 4.117 4 C -0.079 4.079 5 C -0.154 4.154 6 C -0.007 4.007 7 C -0.760 4.760 8 S 2.785 3.215 9 O -0.953 6.953 10 O -0.920 6.920 11 N -0.768 5.768 12 C 0.022 3.978 13 C -0.336 4.336 14 C -0.083 4.083 15 N -0.091 5.091 16 C 0.129 3.871 17 C -0.646 4.646 18 H 0.084 0.916 19 C -0.180 4.180 20 N -0.539 5.539 21 Si 0.896 3.104 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.209 1.209 25 N -0.130 5.130 26 C -0.043 4.043 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.266 0.734 36 H 0.159 0.841 37 H 0.188 0.812 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.063 -11.054 5.986 14.934 hybrid contribution 1.340 -1.209 1.963 2.667 sum -6.722 -12.263 7.949 16.086 Atomic orbital electron populations 1.21782 0.94770 1.01644 1.02404 1.20517 0.96169 0.92283 1.02968 1.19896 1.01979 0.96692 0.93132 1.21351 0.94492 0.94506 0.97589 1.21413 0.99934 0.95040 0.99002 1.21228 0.88526 1.00412 0.90496 1.30612 1.17784 1.07669 1.19911 1.01946 0.71581 0.74324 0.73675 1.93581 1.65222 1.77373 1.59150 1.93637 1.84287 1.29154 1.84961 1.52603 1.21813 1.67465 1.34907 1.18676 0.88069 0.98375 0.92666 1.20850 0.90646 1.16312 1.05842 1.22433 0.96975 0.97305 0.91583 1.48803 1.01017 1.39068 1.20253 1.19836 0.97162 0.91116 0.78963 1.22066 1.33351 1.16416 0.92736 0.91616 1.25831 0.96469 0.95247 1.00408 1.70842 1.28395 1.19737 1.34880 0.83531 0.75927 0.75529 0.75387 1.20457 1.21207 1.20950 1.77407 1.03408 1.21343 1.10862 1.20674 0.93233 0.91907 0.98468 0.92397 0.92379 0.92529 0.90918 0.90922 0.85609 0.84781 0.82781 0.73369 0.84057 0.81199 0.93520 0.94404 0.92158 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.94 16 2 C -0.08 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.12 -1.53 5.13 -104.62 -0.54 -2.06 16 4 C -0.06 -0.85 9.70 -39.58 -0.38 -1.23 16 5 C -0.14 -2.24 10.05 -39.59 -0.40 -2.64 16 6 C 0.01 0.23 8.70 -39.58 -0.34 -0.11 16 7 C -0.67 -11.17 5.91 -39.58 -0.23 -11.40 16 8 S 2.69 44.75 5.50 -107.50 -0.59 44.16 16 9 O -0.96 -15.95 17.28 -57.17 -0.99 -16.94 16 10 O -0.93 -18.88 16.49 -57.17 -0.94 -19.83 16 11 N -1.01 -15.16 5.91 31.39 0.19 -14.97 16 12 C 0.28 5.07 7.72 -154.55 -1.19 3.88 16 13 C -0.30 -4.88 10.83 -39.82 -0.43 -5.31 16 14 C 0.07 1.18 11.44 -17.24 -0.20 0.98 16 15 N -0.31 -6.68 3.67 -62.56 -0.23 -6.91 16 16 C 0.25 5.86 5.57 -5.19 -0.03 5.83 16 17 C -0.61 -15.93 9.24 -34.44 -0.32 -16.25 16 18 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 20 N -0.90 -25.33 13.65 55.43 0.76 -24.58 16 21 Si 1.07 23.67 29.90 -169.99 -5.08 18.58 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 N -0.30 -6.48 9.89 31.41 0.31 -6.17 16 26 C -0.02 -0.34 9.18 -39.59 -0.36 -0.70 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.15 3.17 6.89 -52.48 -0.36 2.81 16 35 H 0.43 4.66 8.95 -34.47 -0.31 4.35 16 36 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 39 H 0.04 0.95 8.00 -51.93 -0.42 0.54 16 40 H 0.27 7.35 7.22 -40.82 -0.29 7.05 16 41 H 0.13 1.63 7.62 -52.49 -0.40 1.23 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -33.33 365.76 -10.59 -43.92 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.20 Total: 7.56 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -4.33 Total: -30.34 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 1.02 Total: -52.62 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.93 Total: -36.77 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.58 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.59 Total: 44.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.33 -10.59 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080940332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.588 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds