Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50699 * 109.47140 * 2 1 4 4 C 1.38261 * 120.00018 * 270.02228 * 3 2 1 5 5 C 1.38207 * 119.99937 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.00087 * 359.76309 * 5 4 3 7 7 C 1.38221 * 119.99871 * 0.46535 * 6 5 4 8 8 S 1.76204 * 119.99729 * 179.78476 * 7 6 5 9 9 O 1.42104 * 106.39598 * 156.18590 * 8 7 6 10 10 O 1.42098 * 106.40117 * 23.27177 * 8 7 6 11 11 N 1.65594 * 107.22039 * 269.72612 * 8 7 6 12 12 C 1.39989 * 119.99656 * 65.00173 * 11 8 7 13 13 C 1.40432 * 125.97226 * 180.02562 * 12 11 8 14 14 C 1.35251 * 107.86019 * 179.70499 * 13 12 11 15 15 N 1.34962 * 107.86128 * 0.42675 * 14 13 12 16 16 C 1.46500 * 125.97410 * 179.83595 * 15 14 13 17 17 C 1.50706 * 109.47299 * 124.71196 * 16 15 14 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 N 1.31219 * 125.97824 * 359.97438 * 12 11 8 26 26 C 1.38209 * 119.99908 * 89.99581 * 3 2 1 27 27 H 1.08995 * 109.46936 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47030 * 300.00135 * 1 2 3 29 29 H 1.09003 * 109.46708 * 60.00118 * 1 2 3 30 30 H 1.09001 * 109.47030 * 239.99865 * 2 1 3 31 31 H 1.09003 * 109.46708 * 119.99882 * 2 1 3 32 32 H 1.07996 * 119.99673 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00116 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.00326 * 180.25571 * 6 5 4 35 35 H 0.96996 * 120.00453 * 245.00506 * 11 8 7 36 36 H 1.07997 * 126.07138 * 0.02562 * 13 12 11 37 37 H 1.07992 * 126.07316 * 180.25997 * 14 13 12 38 38 H 1.09004 * 109.47078 * 4.71958 * 16 15 14 39 39 H 1.08993 * 109.47364 * 244.71729 * 16 15 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 41 41 H 1.08002 * 120.00355 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0727 -1.1974 5 6 2.7236 3.3756 -1.1974 6 6 2.9503 4.0286 -0.0001 7 6 2.7249 3.3753 1.1970 8 16 3.0193 4.2058 2.7229 9 8 2.2116 3.5565 3.6952 10 8 2.9345 5.5968 2.4455 11 7 4.5920 3.9085 3.1474 12 6 5.6358 4.3984 2.3536 13 6 7.0080 4.2215 2.5940 14 6 7.6863 4.8381 1.5995 15 7 6.7828 5.3936 0.7648 16 6 7.0873 6.1613 -0.4452 17 6 6.3774 5.5449 -1.6231 18 1 5.7608 4.6692 -1.4841 19 6 6.5151 6.0989 -2.8781 20 7 7.2616 7.1685 -3.0464 21 14 5.6346 5.3354 -4.3380 22 1 5.9384 6.1170 -5.5635 23 1 6.0956 3.9350 -4.5169 24 1 4.1699 5.3469 -4.0939 25 7 5.5031 5.1025 1.2542 26 6 2.2627 2.0723 1.1969 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0825 1.5636 -2.1326 33 1 2.9037 3.8847 -2.1326 34 1 3.3068 5.0481 0.0000 35 1 4.7901 3.3948 3.9460 36 1 7.4442 3.6837 3.4227 37 1 8.7601 4.8808 1.4936 38 1 8.1627 6.1491 -0.6223 39 1 6.7518 7.1903 -0.3167 40 1 7.7187 7.5652 -2.2884 41 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080940332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = -0.762272 kcal Electronic energy + Delta-G solvation = -26993.271902 eV Core-core repulsion = 23193.704890 eV Total energy + Delta-G solvation = -3799.567012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08565 -40.44313 -38.51494 -37.16837 -36.82545 -35.50509 -35.15480 -32.40635 -32.32713 -31.01666 -30.36972 -28.10626 -25.11625 -24.96693 -24.35940 -22.54651 -22.31514 -22.17612 -20.16912 -19.21455 -18.83584 -18.67462 -18.14315 -17.11790 -17.09442 -16.65398 -16.03988 -15.97205 -15.63097 -15.53562 -15.05091 -14.83323 -14.51518 -14.48292 -14.32931 -14.25966 -13.66094 -13.49088 -13.38507 -13.33551 -13.28457 -13.18894 -13.10481 -12.81314 -12.73526 -12.48021 -12.16894 -11.98005 -11.81117 -11.61251 -11.47209 -11.01793 -10.66096 -10.41403 -9.94601 -9.80944 -9.26553 -8.73353 -6.49857 -0.90026 -0.23272 0.26275 1.10306 1.34427 1.48789 1.55395 1.75232 1.86298 2.03833 2.36405 2.49052 2.65490 3.05455 3.16776 3.58709 3.69298 3.78829 3.99031 4.02679 4.20914 4.23228 4.37510 4.42495 4.50560 4.58587 4.69365 4.73896 4.75696 4.83513 4.93203 4.97566 5.00840 5.06517 5.12685 5.32493 5.38801 5.45716 5.52714 5.73115 5.84248 5.90301 5.97575 6.32270 6.45161 6.87070 7.25335 8.63805 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.005494 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.085783 B = 5094.946326 C = 7183.347243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.108 4.108 4 C -0.056 4.056 5 C -0.154 4.154 6 C -0.016 4.016 7 C -0.678 4.678 8 S 2.708 3.292 9 O -0.962 6.962 10 O -0.975 6.975 11 N -0.999 5.999 12 C 0.275 3.725 13 C -0.288 4.288 14 C 0.065 3.935 15 N -0.342 5.342 16 C 0.258 3.742 17 C -0.611 4.611 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.928 5.928 21 Si 1.105 2.895 22 H -0.281 1.281 23 H -0.267 1.267 24 H -0.270 1.270 25 N -0.347 5.347 26 C -0.027 4.027 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.449 0.551 36 H 0.187 0.813 37 H 0.207 0.793 38 H 0.057 0.943 39 H 0.010 0.990 40 H 0.261 0.739 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -16.074 8.995 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.074 4.074 5 C -0.173 4.173 6 C -0.036 4.036 7 C -0.768 4.768 8 S 2.801 3.199 9 O -0.952 6.952 10 O -0.965 6.965 11 N -0.756 5.756 12 C 0.018 3.982 13 C -0.321 4.321 14 C -0.083 4.083 15 N -0.123 5.123 16 C 0.138 3.862 17 C -0.649 4.649 18 H 0.071 0.929 19 C -0.217 4.217 20 N -0.565 5.565 21 Si 0.927 3.073 22 H -0.206 1.206 23 H -0.192 1.192 24 H -0.195 1.195 25 N -0.177 5.177 26 C -0.047 4.047 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.290 0.710 36 H 0.204 0.796 37 H 0.224 0.776 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.289 -14.704 6.839 18.212 hybrid contribution 1.382 -0.167 1.847 2.313 sum -6.907 -14.871 8.686 18.556 Atomic orbital electron populations 1.21790 0.93925 1.02894 1.01978 1.20634 0.96740 0.89805 1.04611 1.20367 1.00060 0.98300 0.92201 1.21703 0.92948 0.93226 0.99517 1.21487 1.01142 0.96557 0.98085 1.20979 0.90958 0.99449 0.92191 1.30466 1.18832 1.08729 1.18735 1.01293 0.71724 0.73366 0.73511 1.93570 1.65386 1.77047 1.59178 1.93586 1.85097 1.32178 1.85609 1.52348 1.20596 1.67320 1.35298 1.19037 0.89709 0.97390 0.92033 1.21348 0.89254 1.15215 1.06283 1.23206 0.98407 0.96041 0.90666 1.48554 1.01970 1.40984 1.20791 1.19430 0.97081 0.90000 0.79659 1.22263 1.32939 1.15866 0.93875 0.92913 1.27094 0.96447 0.95026 1.03135 1.70939 1.29926 1.20942 1.34689 0.83094 0.75903 0.75751 0.72594 1.20591 1.19187 1.19503 1.77374 1.04131 1.23355 1.12870 1.21065 0.92375 0.90959 1.00257 0.90342 0.93066 0.92797 0.89246 0.89413 0.82391 0.85468 0.86403 0.71003 0.79611 0.77613 0.92533 0.97174 0.92973 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.90 71.99 0.71 -1.38 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.11 -2.57 5.13 -19.87 -0.10 -2.67 16 4 C -0.06 -1.46 9.70 22.27 0.22 -1.24 16 5 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 6 C -0.02 -0.62 8.70 22.27 0.19 -0.42 16 7 C -0.68 -22.67 5.91 22.27 0.13 -22.54 16 8 S 2.71 90.41 5.50 -56.49 -0.31 90.10 16 9 O -0.96 -30.76 17.28 -128.00 -2.21 -32.98 16 10 O -0.97 -41.51 16.49 -128.00 -2.11 -43.62 16 11 N -1.00 -28.73 5.91 -54.61 -0.32 -29.05 16 12 C 0.28 9.85 7.72 133.39 1.03 10.88 16 13 C -0.29 -8.54 10.83 22.12 0.24 -8.30 16 14 C 0.07 2.16 11.44 83.52 0.96 3.11 16 15 N -0.34 -14.94 3.67 -351.84 -1.29 -16.23 16 16 C 0.26 12.73 5.57 85.64 0.48 13.21 16 17 C -0.61 -33.22 9.24 25.60 0.24 -32.98 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 19 C -0.02 -0.95 5.46 84.65 0.46 -0.49 16 20 N -0.93 -53.55 13.65 21.45 0.29 -53.26 16 21 Si 1.11 48.10 29.90 68.60 2.05 50.15 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 N -0.35 -15.44 9.89 -54.54 -0.54 -15.98 16 26 C -0.03 -0.73 9.18 22.27 0.20 -0.53 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.12 5.34 6.89 -2.91 -0.02 5.32 16 35 H 0.45 8.68 8.95 -96.75 -0.87 7.81 16 36 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 37 H 0.21 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.06 2.64 7.94 -2.39 -0.02 2.63 16 39 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 40 H 0.26 14.88 7.22 -92.71 -0.67 14.21 16 41 H 0.16 3.38 7.62 -2.91 -0.02 3.36 16 Total: -1.00 -75.75 365.76 1.01 -74.74 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.29 Total: 25.53 kcal Atomic # 6 Polarization: -54.56 SS G_CDS: 5.16 Total: -49.40 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -1.86 Total: -114.52 kcal Atomic # 8 Polarization: -72.28 SS G_CDS: -4.32 Total: -76.60 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Atomic # 16 Polarization: 90.41 SS G_CDS: -0.31 Total: 90.10 kcal Total: -75.75 1.01 -74.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080940332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.975 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds