Wall clock time and date at job start Tue Mar 31 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47027 * 2 1 4 4 N 1.46503 * 109.47052 * 239.99679 * 2 1 3 5 5 N 1.40062 * 126.04269 * 60.02674 * 4 2 1 6 6 C 1.30838 * 108.38821 * 179.97438 * 5 4 2 7 7 C 1.39770 * 108.32515 * 359.97438 * 6 5 4 8 8 C 1.35247 * 126.04150 * 239.71917 * 4 2 1 9 9 N 1.39205 * 126.22241 * 359.97438 * 8 4 2 10 10 S 1.65606 * 119.99968 * 186.45933 * 9 8 4 11 11 O 1.42102 * 106.40140 * 176.54862 * 10 9 8 12 12 O 1.42097 * 106.39904 * 309.46660 * 10 9 8 13 13 C 1.76202 * 107.21975 * 63.00862 * 10 9 8 14 14 C 1.38633 * 119.74452 * 264.20846 * 13 10 9 15 15 C 1.37621 * 120.24502 * 179.72336 * 14 13 10 16 16 C 1.40717 * 119.74202 * 0.56833 * 15 14 13 17 17 C 1.41399 * 120.24357 * 179.68279 * 16 15 14 18 18 H 1.07994 * 120.00073 * 27.50405 * 17 16 15 19 19 C 1.39950 * 119.99932 * 207.50128 * 17 16 15 20 20 N 1.30825 * 120.00042 * 11.18924 * 19 17 16 21 21 Si 1.86804 * 119.99787 * 191.18933 * 19 17 16 22 22 H 1.48503 * 109.47239 * 60.00210 * 21 19 17 23 23 H 1.48494 * 109.46843 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47032 * 300.00196 * 21 19 17 25 25 C 1.40717 * 119.51375 * 359.70359 * 16 15 14 26 26 C 1.37616 * 119.74172 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47322 * 300.00157 * 1 2 3 28 28 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47122 * 60.00853 * 1 2 3 30 30 H 1.08996 * 109.46875 * 120.00047 * 2 1 3 31 31 H 1.08999 * 109.47198 * 59.99767 * 3 2 1 32 32 H 1.08997 * 109.47106 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47054 * 300.00004 * 3 2 1 34 34 H 1.07999 * 125.83267 * 179.97438 * 6 5 4 35 35 H 1.08000 * 126.09285 * 180.02562 * 7 6 5 36 36 H 0.97002 * 119.99924 * 6.45307 * 9 8 4 37 37 H 1.08001 * 119.87802 * 359.97438 * 14 13 10 38 38 H 1.07997 * 120.13345 * 180.27689 * 15 14 13 39 39 H 0.96994 * 119.99550 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.13127 * 179.97438 * 25 16 15 41 41 H 1.08002 * 119.87357 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 7 1.7596 -0.3239 -2.5229 6 6 2.3626 -1.1760 -3.3118 7 6 3.0271 -2.1153 -2.5182 8 6 2.8035 -1.7918 -1.2145 9 7 3.2929 -2.4717 -0.1027 10 16 4.3739 -3.7108 -0.2995 11 8 4.7375 -4.1372 1.0063 12 8 3.8139 -4.5808 -1.2735 13 6 5.8275 -3.0251 -1.0218 14 6 6.0043 -3.0797 -2.3957 15 6 7.1330 -2.5424 -2.9712 16 6 8.1150 -1.9465 -2.1583 17 6 9.2820 -1.3971 -2.7379 18 1 9.2576 -1.0247 -3.7513 19 6 10.4684 -1.3360 -1.9982 20 7 10.5646 -1.9770 -0.8618 21 14 11.9148 -0.3391 -2.6336 22 1 11.5101 1.0821 -2.7805 23 1 13.0425 -0.4352 -1.6722 24 1 12.3414 -0.8713 -3.9527 25 6 7.9275 -1.9019 -0.7644 26 6 6.7878 -2.4396 -0.2114 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.3490 -1.1569 -4.3915 35 1 3.6162 -2.9471 -2.8753 36 1 3.0008 -2.2196 0.7873 37 1 5.2517 -3.5421 -3.0170 38 1 7.2669 -2.5820 -4.0421 39 1 11.3868 -1.9343 -0.3490 40 1 8.6749 -1.4473 -0.1311 41 1 6.6415 -2.4061 0.8582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:23 Heat of formation + Delta-G solvation = 17.130453 kcal Electronic energy + Delta-G solvation = -26860.121486 eV Core-core repulsion = 23061.330361 eV Total energy + Delta-G solvation = -3798.791125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15057 -37.64370 -36.77333 -35.68619 -35.39242 -35.01418 -34.06708 -30.32901 -29.95575 -29.55666 -28.33506 -27.46484 -25.87649 -23.03455 -21.60633 -21.52797 -21.15062 -20.06170 -18.77338 -18.09798 -17.64666 -17.12796 -16.55425 -15.54394 -15.21284 -15.14790 -14.93488 -14.49669 -14.27652 -13.81106 -13.48049 -13.29794 -13.11547 -12.94608 -12.47739 -12.44114 -12.31340 -12.24560 -11.88393 -11.78451 -11.74080 -11.59389 -11.48648 -11.42966 -11.38834 -11.33500 -11.23469 -10.91389 -10.46047 -10.36452 -9.76618 -9.65661 -9.51877 -8.87385 -7.98261 -7.95635 -7.72025 -7.11751 -4.85295 0.84077 2.12021 2.18516 2.49440 2.87202 2.87808 2.89920 2.91244 3.11927 3.38442 3.65042 4.16659 4.32224 4.33319 4.72810 4.78066 4.91609 5.00615 5.04826 5.33305 5.35633 5.40773 5.52369 5.58121 5.73452 5.86388 5.92353 5.98834 6.03063 6.10731 6.40199 6.55961 6.65375 6.69115 6.86733 6.94163 6.99592 7.29750 7.30713 7.37743 7.57611 7.73891 7.91277 7.93490 8.28580 8.47991 8.60456 9.77732 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003713 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.916913 B = 7538.444532 C = 8249.220317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 C -0.161 4.161 4 N -0.381 5.381 5 N -0.299 5.299 6 C 0.075 3.925 7 C -0.313 4.313 8 C 0.347 3.653 9 N -1.042 6.042 10 S 2.686 3.314 11 O -0.968 6.968 12 O -0.963 6.963 13 C -0.779 4.779 14 C 0.008 3.992 15 C -0.233 4.233 16 C 0.142 3.858 17 C -0.433 4.433 18 H 0.088 0.912 19 C 0.069 3.931 20 N -0.771 5.771 21 Si 0.921 3.079 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.177 4.177 26 C -0.017 4.017 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.416 0.584 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.289 0.711 40 H 0.126 0.874 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 5.147 1.945 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 C -0.218 4.218 4 N -0.170 5.170 5 N -0.121 5.121 6 C -0.112 4.112 7 C -0.345 4.345 8 C 0.124 3.876 9 N -0.786 5.786 10 S 2.787 3.213 11 O -0.959 6.959 12 O -0.953 6.953 13 C -0.877 4.877 14 C -0.013 4.013 15 C -0.253 4.253 16 C 0.138 3.862 17 C -0.460 4.460 18 H 0.106 0.894 19 C -0.152 4.152 20 N -0.394 5.394 21 Si 0.744 3.256 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.185 1.185 25 C -0.198 4.198 26 C -0.038 4.038 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.203 0.797 35 H 0.181 0.819 36 H 0.250 0.750 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.144 0.856 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.266 5.200 2.500 13.555 hybrid contribution 1.640 0.273 0.097 1.665 sum -10.626 5.472 2.597 12.231 Atomic orbital electron populations 1.22125 0.93312 1.02920 1.03344 1.21194 0.95523 0.94097 0.83809 1.22126 1.02203 0.94260 1.03249 1.48721 1.40959 1.21238 1.06044 1.77296 1.26040 1.23593 0.85157 1.23534 0.95385 0.92273 0.99961 1.21346 1.15435 1.08576 0.89188 1.17533 0.93965 0.87962 0.88148 1.53819 1.60183 1.52884 1.11726 1.01730 0.73568 0.72567 0.73459 1.93542 1.83314 1.79144 1.39859 1.93518 1.78353 1.61778 1.61651 1.28812 1.19834 1.35162 1.03933 1.20229 0.95931 0.93302 0.91801 1.21055 0.97925 1.07912 0.98448 1.17890 0.90842 0.85323 0.92150 1.19946 0.93476 1.32170 1.00436 0.89429 1.26148 1.01102 0.93832 0.94132 1.69785 1.28321 1.29824 1.11427 0.86138 0.78938 0.80696 0.79829 1.18432 1.19899 1.18507 1.21408 0.97349 1.05243 0.95759 1.20219 0.93315 0.93660 0.96577 0.90887 0.92135 0.90871 0.89011 0.90920 0.91754 0.90890 0.79743 0.81876 0.74996 0.87204 0.87916 0.89920 0.85612 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.45 37.16 0.35 -1.08 16 2 C 0.16 1.69 3.69 -67.93 -0.25 1.43 16 3 C -0.16 -1.60 9.45 37.15 0.35 -1.25 16 4 N -0.38 -5.51 3.28 -53.97 -0.18 -5.69 16 5 N -0.30 -4.56 12.41 30.60 0.38 -4.18 16 6 C 0.07 1.10 12.01 -17.40 -0.21 0.89 16 7 C -0.31 -5.24 8.87 -39.75 -0.35 -5.59 16 8 C 0.35 5.61 7.56 -153.41 -1.16 4.45 16 9 N -1.04 -15.91 5.86 31.10 0.18 -15.73 16 10 S 2.69 50.41 5.33 -107.50 -0.57 49.83 16 11 O -0.97 -19.84 17.41 -57.17 -1.00 -20.84 16 12 O -0.96 -19.56 15.25 -57.17 -0.87 -20.43 16 13 C -0.78 -16.67 5.69 -39.29 -0.22 -16.90 16 14 C 0.01 0.16 8.26 -39.66 -0.33 -0.17 16 15 C -0.23 -5.33 9.80 -38.87 -0.38 -5.72 16 16 C 0.14 3.51 5.56 -106.82 -0.59 2.92 16 17 C -0.43 -10.42 9.07 -37.74 -0.34 -10.76 16 18 H 0.09 1.98 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.58 5.26 -17.34 -0.09 1.49 16 20 N -0.77 -18.22 10.78 55.55 0.60 -17.62 16 21 Si 0.92 16.85 29.57 -169.99 -5.03 11.82 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 25 C -0.18 -4.34 8.67 -38.87 -0.34 -4.67 16 26 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.83 6.83 -51.93 -0.35 0.48 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.19 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.16 2.83 3.98 -52.49 -0.21 2.62 16 36 H 0.42 4.97 7.68 -34.48 -0.26 4.70 16 37 H 0.11 2.12 5.62 -52.49 -0.30 1.83 16 38 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 40 H 0.13 3.13 6.14 -52.49 -0.32 2.81 16 41 H 0.10 2.08 7.73 -52.49 -0.41 1.67 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -30.32 353.18 -9.89 -40.20 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.78 Total: 13.03 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: -3.94 Total: -35.72 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.98 Total: -43.21 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.87 Total: -41.27 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 50.41 SS G_CDS: -0.57 Total: 49.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.32 -9.89 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.333 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds