Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47027 * 2 1 4 4 N 1.46503 * 109.47052 * 239.99679 * 2 1 3 5 5 N 1.40062 * 126.04269 * 60.02674 * 4 2 1 6 6 C 1.30838 * 108.38821 * 179.97438 * 5 4 2 7 7 C 1.39770 * 108.32515 * 359.97438 * 6 5 4 8 8 C 1.35247 * 126.04150 * 239.71917 * 4 2 1 9 9 N 1.39205 * 126.22241 * 359.97438 * 8 4 2 10 10 S 1.65606 * 119.99968 * 186.45933 * 9 8 4 11 11 O 1.42102 * 106.40140 * 176.54862 * 10 9 8 12 12 O 1.42097 * 106.39904 * 309.46660 * 10 9 8 13 13 C 1.76202 * 107.21975 * 63.00862 * 10 9 8 14 14 C 1.38633 * 119.74452 * 264.20846 * 13 10 9 15 15 C 1.37621 * 120.24502 * 179.72336 * 14 13 10 16 16 C 1.40717 * 119.74202 * 0.56833 * 15 14 13 17 17 C 1.41399 * 120.24357 * 179.68279 * 16 15 14 18 18 H 1.07994 * 120.00073 * 27.50405 * 17 16 15 19 19 C 1.39950 * 119.99932 * 207.50128 * 17 16 15 20 20 N 1.30825 * 120.00042 * 11.18924 * 19 17 16 21 21 Si 1.86804 * 119.99787 * 191.18933 * 19 17 16 22 22 H 1.48503 * 109.47239 * 60.00210 * 21 19 17 23 23 H 1.48494 * 109.46843 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47032 * 300.00196 * 21 19 17 25 25 C 1.40717 * 119.51375 * 359.70359 * 16 15 14 26 26 C 1.37616 * 119.74172 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47322 * 300.00157 * 1 2 3 28 28 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47122 * 60.00853 * 1 2 3 30 30 H 1.08996 * 109.46875 * 120.00047 * 2 1 3 31 31 H 1.08999 * 109.47198 * 59.99767 * 3 2 1 32 32 H 1.08997 * 109.47106 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47054 * 300.00004 * 3 2 1 34 34 H 1.07999 * 125.83267 * 179.97438 * 6 5 4 35 35 H 1.08000 * 126.09285 * 180.02562 * 7 6 5 36 36 H 0.97002 * 119.99924 * 6.45307 * 9 8 4 37 37 H 1.08001 * 119.87802 * 359.97438 * 14 13 10 38 38 H 1.07997 * 120.13345 * 180.27689 * 15 14 13 39 39 H 0.96994 * 119.99550 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.13127 * 179.97438 * 25 16 15 41 41 H 1.08002 * 119.87357 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 7 1.7596 -0.3239 -2.5229 6 6 2.3626 -1.1760 -3.3118 7 6 3.0271 -2.1153 -2.5182 8 6 2.8035 -1.7918 -1.2145 9 7 3.2929 -2.4717 -0.1027 10 16 4.3739 -3.7108 -0.2995 11 8 4.7375 -4.1372 1.0063 12 8 3.8139 -4.5808 -1.2735 13 6 5.8275 -3.0251 -1.0218 14 6 6.0043 -3.0797 -2.3957 15 6 7.1330 -2.5424 -2.9712 16 6 8.1150 -1.9465 -2.1583 17 6 9.2820 -1.3971 -2.7379 18 1 9.2576 -1.0247 -3.7513 19 6 10.4684 -1.3360 -1.9982 20 7 10.5646 -1.9770 -0.8618 21 14 11.9148 -0.3391 -2.6336 22 1 11.5101 1.0821 -2.7805 23 1 13.0425 -0.4352 -1.6722 24 1 12.3414 -0.8713 -3.9527 25 6 7.9275 -1.9019 -0.7644 26 6 6.7878 -2.4396 -0.2114 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.3490 -1.1569 -4.3915 35 1 3.6162 -2.9471 -2.8753 36 1 3.0008 -2.2196 0.7873 37 1 5.2517 -3.5421 -3.0170 38 1 7.2669 -2.5820 -4.0421 39 1 11.3868 -1.9343 -0.3490 40 1 8.6749 -1.4473 -0.1311 41 1 6.6415 -2.4061 0.8582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -1.229578 kcal Electronic energy + Delta-G solvation = -26860.917637 eV Core-core repulsion = 23061.330361 eV Total energy + Delta-G solvation = -3799.587276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30820 -39.40434 -38.38030 -37.00919 -36.61040 -36.29426 -35.79131 -32.08703 -31.37869 -30.96526 -29.58897 -28.20902 -27.63952 -24.03533 -23.32512 -23.09578 -22.63147 -21.19319 -20.25357 -19.43039 -19.14789 -18.68703 -18.10154 -17.19321 -16.59196 -16.30842 -16.19136 -15.79373 -15.51394 -15.23038 -15.02021 -14.88158 -14.16285 -14.04796 -14.00135 -13.91913 -13.61808 -13.56010 -13.30054 -13.18362 -13.16341 -12.96970 -12.89111 -12.81585 -12.75629 -12.58488 -12.33969 -12.26155 -12.01310 -11.59251 -11.45331 -11.35799 -11.20658 -9.99100 -9.76824 -9.53747 -9.19450 -8.81706 -6.66783 -0.69325 0.45086 0.92546 1.08011 1.35481 1.37608 1.45767 1.50088 1.90458 2.01398 2.12548 2.50487 2.73513 3.40041 3.44645 3.51567 3.72941 3.93609 3.99485 4.07851 4.25917 4.29783 4.43163 4.67708 4.71038 4.73047 4.80033 4.88206 4.91106 4.95705 5.05678 5.12855 5.21876 5.22950 5.23615 5.48292 5.53842 5.59576 5.75074 5.77758 5.94741 6.15940 6.17185 6.49718 6.69201 6.74983 6.80797 8.11011 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003713 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.916913 B = 7538.444532 C = 8249.220317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 C -0.155 4.155 4 N -0.376 5.376 5 N -0.308 5.308 6 C 0.072 3.928 7 C -0.337 4.337 8 C 0.332 3.668 9 N -1.027 6.027 10 S 2.726 3.274 11 O -0.982 6.982 12 O -0.974 6.974 13 C -0.790 4.790 14 C 0.008 3.992 15 C -0.250 4.250 16 C 0.114 3.886 17 C -0.465 4.465 18 H 0.092 0.908 19 C 0.032 3.968 20 N -0.804 5.804 21 Si 0.993 3.007 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.256 1.256 25 C -0.202 4.202 26 C -0.022 4.022 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.215 0.785 35 H 0.154 0.846 36 H 0.433 0.567 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.297 0.703 40 H 0.114 0.886 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 5.967 2.330 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 C -0.213 4.213 4 N -0.165 5.165 5 N -0.130 5.130 6 C -0.114 4.114 7 C -0.370 4.370 8 C 0.108 3.892 9 N -0.777 5.777 10 S 2.823 3.177 11 O -0.972 6.972 12 O -0.964 6.964 13 C -0.885 4.885 14 C -0.012 4.012 15 C -0.271 4.271 16 C 0.111 3.889 17 C -0.492 4.492 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.428 5.428 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.180 1.180 25 C -0.223 4.223 26 C -0.042 4.042 27 H 0.122 0.878 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.172 0.828 36 H 0.271 0.729 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.356 6.038 2.893 14.940 hybrid contribution 1.786 -0.005 0.036 1.787 sum -11.570 6.033 2.929 13.373 Atomic orbital electron populations 1.22088 0.91689 1.02863 1.04311 1.21695 0.96918 0.94456 0.83102 1.22102 1.00945 0.93957 1.04305 1.49063 1.40093 1.20572 1.06728 1.77266 1.26222 1.23800 0.85705 1.24018 0.94559 0.91386 1.01391 1.21491 1.16284 1.09162 0.90063 1.17604 0.94731 0.88836 0.88010 1.53214 1.59262 1.52455 1.12728 1.00586 0.72638 0.72070 0.72439 1.93522 1.83683 1.79649 1.40377 1.93504 1.78215 1.62495 1.62232 1.29299 1.21313 1.33816 1.04057 1.20508 0.95813 0.92590 0.92291 1.21290 0.98264 1.08386 0.99127 1.18241 0.91889 0.86141 0.92656 1.20238 0.94269 1.33556 1.01184 0.88949 1.27010 1.03360 0.94232 0.94030 1.69834 1.29481 1.30848 1.12589 0.85066 0.75433 0.78899 0.79354 1.18085 1.18997 1.17960 1.21423 0.98076 1.06831 0.95939 1.20450 0.92970 0.93169 0.97613 0.87834 0.92664 0.91975 0.87116 0.87763 0.93593 0.91953 0.76854 0.82819 0.72950 0.85127 0.86767 0.89184 0.86838 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.45 71.98 0.68 -1.66 16 2 C 0.14 2.68 3.69 44.99 0.17 2.85 16 3 C -0.16 -2.79 9.45 71.98 0.68 -2.11 16 4 N -0.38 -10.29 3.28 -324.65 -1.07 -11.35 16 5 N -0.31 -8.98 12.41 -57.09 -0.71 -9.69 16 6 C 0.07 2.04 12.01 85.21 1.02 3.06 16 7 C -0.34 -10.97 8.87 22.16 0.20 -10.77 16 8 C 0.33 10.28 7.56 131.43 0.99 11.28 16 9 N -1.03 -29.68 5.86 -55.51 -0.33 -30.00 16 10 S 2.73 98.95 5.33 -56.49 -0.30 98.64 16 11 O -0.98 -38.80 17.41 -128.00 -2.23 -41.03 16 12 O -0.97 -38.34 15.25 -128.00 -1.95 -40.30 16 13 C -0.79 -33.62 5.69 22.46 0.13 -33.49 16 14 C 0.01 0.33 8.26 22.22 0.18 0.52 16 15 C -0.25 -11.69 9.80 22.73 0.22 -11.47 16 16 C 0.11 5.84 5.56 -21.29 -0.12 5.72 16 17 C -0.47 -23.01 9.07 23.46 0.21 -22.80 16 18 H 0.09 4.28 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.47 5.26 85.26 0.45 1.92 16 20 N -0.80 -38.92 10.78 21.83 0.24 -38.69 16 21 Si 0.99 34.46 29.57 68.60 2.03 36.49 16 22 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 23 H -0.27 -8.75 7.11 99.48 0.71 -8.05 16 24 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 25 C -0.20 -10.23 8.67 22.73 0.20 -10.03 16 26 C -0.02 -1.00 9.49 22.22 0.21 -0.79 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.69 6.83 -2.39 -0.02 1.67 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.21 4.40 8.06 -2.91 -0.02 4.37 16 35 H 0.15 5.23 3.98 -2.91 -0.01 5.22 16 36 H 0.43 9.35 7.68 -96.74 -0.74 8.60 16 37 H 0.13 4.98 5.62 -2.91 -0.02 4.97 16 38 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.30 12.87 8.30 -92.71 -0.77 12.11 16 40 H 0.11 5.90 6.14 -2.91 -0.02 5.89 16 41 H 0.12 4.80 7.73 -2.91 -0.02 4.77 16 Total: -1.00 -65.81 353.18 1.24 -64.56 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.34 Total: 39.12 kcal Atomic # 6 Polarization: -72.99 SS G_CDS: 5.22 Total: -67.77 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -1.87 Total: -89.72 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: -4.18 Total: -81.33 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 16 Polarization: 98.95 SS G_CDS: -0.30 Total: 98.64 kcal Total: -65.81 1.24 -64.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.332 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds