Wall clock time and date at job start Tue Mar 31 2020 19:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47220 * 239.99240 * 2 1 3 5 5 N 1.46495 * 109.47213 * 175.00039 * 4 2 1 6 6 C 1.34953 * 126.03768 * 125.00288 * 5 4 2 7 7 C 1.35314 * 107.74822 * 179.97438 * 6 5 4 8 8 C 1.39872 * 107.91977 * 359.97438 * 7 6 5 9 9 N 1.30839 * 108.20376 * 359.74249 * 8 7 6 10 10 N 1.46508 * 109.46839 * 119.99626 * 2 1 3 11 11 S 1.65596 * 119.99744 * 264.99886 * 10 2 1 12 12 O 1.42095 * 106.40468 * 311.45767 * 11 10 2 13 13 O 1.42104 * 106.39892 * 178.54110 * 11 10 2 14 14 C 1.76203 * 107.21984 * 65.00513 * 11 10 2 15 15 C 1.38627 * 119.75283 * 89.99353 * 14 11 10 16 16 C 1.37617 * 120.24981 * 179.70089 * 15 14 11 17 17 C 1.40718 * 119.74355 * 0.28290 * 16 15 14 18 18 C 1.41402 * 120.24523 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99833 * 204.38492 * 18 17 16 20 20 C 1.39950 * 119.99673 * 24.38625 * 18 17 16 21 21 N 1.30819 * 120.00082 * 17.85869 * 20 18 17 22 22 Si 1.86800 * 119.99528 * 197.85991 * 20 18 17 23 23 H 1.48491 * 109.47313 * 89.99856 * 22 20 18 24 24 H 1.48501 * 109.46879 * 209.99817 * 22 20 18 25 25 H 1.48499 * 109.47205 * 329.99640 * 22 20 18 26 26 C 1.40718 * 119.51138 * 359.97438 * 17 16 15 27 27 C 1.37614 * 119.74432 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47055 * 300.00800 * 1 2 3 30 30 H 1.08995 * 109.46642 * 60.00236 * 1 2 3 31 31 H 1.08994 * 109.47673 * 295.00200 * 4 2 1 32 32 H 1.09000 * 109.47105 * 55.00804 * 4 2 1 33 33 H 1.07999 * 126.12571 * 0.02562 * 6 5 4 34 34 H 1.07999 * 126.04306 * 179.97438 * 7 6 5 35 35 H 1.08004 * 125.89867 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99694 * 85.00183 * 10 2 1 37 37 H 1.08001 * 119.87708 * 359.97438 * 15 14 11 38 38 H 1.08000 * 120.13392 * 180.29978 * 16 15 14 39 39 H 0.97001 * 119.99459 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.12653 * 180.02562 * 26 17 16 41 41 H 1.08007 * 119.87423 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.6180 -1.3108 6 6 4.3655 -1.6488 -1.4092 7 6 5.6170 -1.1352 -1.4386 8 6 5.5129 0.2571 -1.3560 9 7 4.2441 0.5687 -1.2853 10 7 2.0183 -0.6906 1.1963 11 16 2.4121 0.1773 2.5505 12 8 3.2437 1.2443 2.1156 13 8 2.8123 -0.7696 3.5316 14 6 0.9274 0.9149 3.1474 15 6 0.1401 0.2331 4.0622 16 6 -1.0184 0.8021 4.5399 17 6 -1.4056 2.0785 4.0915 18 6 -2.5936 2.6733 4.5757 19 1 -3.1000 3.4242 3.9874 20 6 -3.1129 2.2890 5.8171 21 7 -2.3532 1.6626 6.6784 22 14 -4.8910 2.6705 6.2441 23 1 -5.7565 1.5439 5.8122 24 1 -5.0183 2.8581 7.7117 25 1 -5.3116 3.9130 5.5480 26 6 -0.6014 2.7590 3.1587 27 6 0.5529 2.1707 2.6947 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6055 -0.2619 -2.1369 33 1 4.1057 -2.6960 -1.4568 34 1 6.5343 -1.7005 -1.5128 35 1 6.3373 0.9549 -1.3557 36 1 2.1110 -1.6561 1.1950 37 1 0.4392 -0.7465 4.4048 38 1 -1.6279 0.2713 5.2562 39 1 -2.7134 1.3960 7.5387 40 1 -0.8889 3.7392 2.8082 41 1 1.1720 2.6913 1.9790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:05 Heat of formation + Delta-G solvation = 14.511992 kcal Electronic energy + Delta-G solvation = -26650.268643 eV Core-core repulsion = 22851.363973 eV Total energy + Delta-G solvation = -3798.904670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05581 -37.63909 -37.00721 -36.32597 -35.07462 -34.06215 -32.46008 -30.29787 -30.16476 -29.67104 -29.43350 -26.33111 -25.79940 -22.05024 -21.50393 -21.18434 -21.02671 -20.44582 -19.03375 -17.66391 -17.47081 -17.05591 -16.52978 -15.87827 -15.43604 -15.10726 -14.63255 -14.28166 -14.11657 -13.82873 -13.43875 -13.27582 -13.16042 -12.87908 -12.81620 -12.55829 -12.36428 -12.21080 -11.97842 -11.73699 -11.45257 -11.43687 -11.29929 -11.24989 -11.19562 -11.05248 -10.84575 -10.50717 -10.42115 -9.80134 -9.70294 -9.51499 -9.37583 -9.14493 -8.52451 -7.97322 -7.71660 -7.15604 -4.81891 1.26053 1.96654 2.24004 2.53707 2.86348 2.88550 2.91068 2.91534 2.93927 3.64071 3.68609 4.22079 4.31979 4.56105 4.73092 4.78759 5.01734 5.04708 5.26631 5.31369 5.35335 5.37749 5.58162 5.66753 5.79209 5.87509 6.03368 6.06060 6.10655 6.24032 6.41063 6.66705 6.69570 6.70961 6.90142 7.02520 7.03460 7.23785 7.32574 7.41129 7.62260 7.75177 7.78903 7.95239 8.30349 8.49637 8.63115 9.75879 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002992 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.265170 B = 9354.505083 C = 9688.694841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.105 0.895 4 C 0.130 3.870 5 N -0.367 5.367 6 C 0.047 3.953 7 C -0.278 4.278 8 C 0.040 3.960 9 N -0.277 5.277 10 N -1.120 6.120 11 S 2.690 3.310 12 O -0.975 6.975 13 O -0.987 6.987 14 C -0.786 4.786 15 C -0.014 4.014 16 C -0.184 4.184 17 C 0.140 3.860 18 C -0.436 4.436 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.764 5.764 22 Si 0.918 3.082 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.238 4.238 27 C 0.002 3.998 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.180 0.820 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.289 0.711 40 H 0.100 0.900 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -7.098 -13.152 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.034 3.966 3 H 0.123 0.877 4 C 0.007 3.993 5 N -0.149 5.149 6 C -0.099 4.099 7 C -0.308 4.308 8 C -0.147 4.147 9 N -0.098 5.098 10 N -0.875 5.875 11 S 2.789 3.211 12 O -0.965 6.965 13 O -0.978 6.978 14 C -0.882 4.882 15 C -0.034 4.034 16 C -0.204 4.204 17 C 0.136 3.864 18 C -0.463 4.463 19 H 0.106 0.894 20 C -0.151 4.151 21 N -0.386 5.386 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.258 4.258 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.187 0.813 34 H 0.161 0.839 35 H 0.197 0.803 36 H 0.239 0.761 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.793 -6.005 -12.479 14.359 hybrid contribution -0.841 -0.898 0.388 1.290 sum 2.952 -6.903 -12.091 14.232 Atomic orbital electron populations 1.22372 0.93785 1.03106 1.04298 1.20993 0.94502 0.97662 0.83440 0.87688 1.22112 0.74991 1.02731 0.99512 1.48679 1.06312 1.04084 1.55850 1.22514 0.90441 0.94508 1.02439 1.21474 0.97414 0.94620 1.17261 1.23871 0.94703 0.95845 1.00242 1.77441 1.04297 1.05398 1.22644 1.55846 1.84381 1.18933 1.28330 1.01350 0.74929 0.73001 0.71831 1.93515 1.65786 1.55511 1.81725 1.93491 1.82675 1.63246 1.58344 1.29141 1.26757 1.09766 1.22512 1.20234 0.93426 0.96953 0.92826 1.21332 0.98267 0.96279 1.04520 1.17844 0.90310 0.90308 0.87902 1.19949 1.06206 1.18575 1.01580 0.89438 1.26147 1.00251 0.92873 0.95797 1.69827 1.36697 1.26065 1.06045 0.86141 0.81008 0.80334 0.78442 1.18825 1.19863 1.18189 1.21016 0.97613 1.00145 1.07035 1.20155 0.94658 0.92005 0.95028 0.91965 0.89513 0.91516 0.88205 0.88607 0.81322 0.83874 0.80308 0.76138 0.88050 0.86057 0.89927 0.88221 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.52 37.16 0.35 -1.70 16 2 C 0.14 1.81 3.03 -67.93 -0.21 1.60 16 3 H 0.11 1.60 7.42 -51.93 -0.39 1.21 16 4 C 0.13 1.26 6.06 -4.05 -0.02 1.23 16 5 N -0.37 -4.55 3.60 -61.37 -0.22 -4.77 16 6 C 0.05 0.50 11.45 -17.22 -0.20 0.30 16 7 C -0.28 -3.12 10.80 -40.01 -0.43 -3.56 16 8 C 0.04 0.52 12.03 -17.36 -0.21 0.31 16 9 N -0.28 -4.22 12.35 30.63 0.38 -3.84 16 10 N -1.12 -16.20 5.40 -4.89 -0.03 -16.23 16 11 S 2.69 53.06 5.71 -107.50 -0.61 52.45 16 12 O -0.98 -21.65 16.60 -57.17 -0.95 -22.60 16 13 O -0.99 -21.94 17.26 -57.17 -0.99 -22.93 16 14 C -0.79 -17.04 5.09 -39.29 -0.20 -17.24 16 15 C -0.01 -0.32 9.49 -39.66 -0.38 -0.70 16 16 C -0.18 -4.52 8.70 -38.87 -0.34 -4.86 16 17 C 0.14 3.47 5.58 -106.82 -0.60 2.88 16 18 C -0.44 -10.52 9.05 -37.74 -0.34 -10.87 16 19 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 20 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 21 N -0.76 -18.25 10.95 55.55 0.61 -17.64 16 22 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 23 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 26 C -0.24 -5.48 9.80 -38.87 -0.38 -5.86 16 27 C 0.00 0.04 8.53 -39.66 -0.34 -0.30 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.29 6.15 -51.93 -0.32 0.97 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.18 1.85 8.06 -52.48 -0.42 1.42 16 36 H 0.41 4.83 8.84 -34.47 -0.30 4.53 16 37 H 0.10 2.18 7.60 -52.49 -0.40 1.79 16 38 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 39 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -32.86 361.74 -9.82 -42.68 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.06 Total: 12.80 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: -3.38 Total: -37.20 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.74 Total: -42.48 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.94 Total: -45.52 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.61 Total: 52.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.86 -9.82 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.195 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds