Wall clock time and date at job start Tue Mar 31 2020 19:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47220 * 239.99240 * 2 1 3 5 5 N 1.46495 * 109.47213 * 175.00039 * 4 2 1 6 6 C 1.34953 * 126.03768 * 125.00288 * 5 4 2 7 7 C 1.35314 * 107.74822 * 179.97438 * 6 5 4 8 8 C 1.39872 * 107.91977 * 359.97438 * 7 6 5 9 9 N 1.30839 * 108.20376 * 359.74249 * 8 7 6 10 10 N 1.46508 * 109.46839 * 119.99626 * 2 1 3 11 11 S 1.65596 * 119.99744 * 264.99886 * 10 2 1 12 12 O 1.42095 * 106.40468 * 311.45767 * 11 10 2 13 13 O 1.42104 * 106.39892 * 178.54110 * 11 10 2 14 14 C 1.76203 * 107.21984 * 65.00513 * 11 10 2 15 15 C 1.38627 * 119.75283 * 89.99353 * 14 11 10 16 16 C 1.37617 * 120.24981 * 179.70089 * 15 14 11 17 17 C 1.40718 * 119.74355 * 0.28290 * 16 15 14 18 18 C 1.41402 * 120.24523 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99833 * 204.38492 * 18 17 16 20 20 C 1.39950 * 119.99673 * 24.38625 * 18 17 16 21 21 N 1.30819 * 120.00082 * 17.85869 * 20 18 17 22 22 Si 1.86800 * 119.99528 * 197.85991 * 20 18 17 23 23 H 1.48491 * 109.47313 * 89.99856 * 22 20 18 24 24 H 1.48501 * 109.46879 * 209.99817 * 22 20 18 25 25 H 1.48499 * 109.47205 * 329.99640 * 22 20 18 26 26 C 1.40718 * 119.51138 * 359.97438 * 17 16 15 27 27 C 1.37614 * 119.74432 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47055 * 300.00800 * 1 2 3 30 30 H 1.08995 * 109.46642 * 60.00236 * 1 2 3 31 31 H 1.08994 * 109.47673 * 295.00200 * 4 2 1 32 32 H 1.09000 * 109.47105 * 55.00804 * 4 2 1 33 33 H 1.07999 * 126.12571 * 0.02562 * 6 5 4 34 34 H 1.07999 * 126.04306 * 179.97438 * 7 6 5 35 35 H 1.08004 * 125.89867 * 180.02562 * 8 7 6 36 36 H 0.96999 * 119.99694 * 85.00183 * 10 2 1 37 37 H 1.08001 * 119.87708 * 359.97438 * 15 14 11 38 38 H 1.08000 * 120.13392 * 180.29978 * 16 15 14 39 39 H 0.97001 * 119.99459 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.12653 * 180.02562 * 26 17 16 41 41 H 1.08007 * 119.87423 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.6180 -1.3108 6 6 4.3655 -1.6488 -1.4092 7 6 5.6170 -1.1352 -1.4386 8 6 5.5129 0.2571 -1.3560 9 7 4.2441 0.5687 -1.2853 10 7 2.0183 -0.6906 1.1963 11 16 2.4121 0.1773 2.5505 12 8 3.2437 1.2443 2.1156 13 8 2.8123 -0.7696 3.5316 14 6 0.9274 0.9149 3.1474 15 6 0.1401 0.2331 4.0622 16 6 -1.0184 0.8021 4.5399 17 6 -1.4056 2.0785 4.0915 18 6 -2.5936 2.6733 4.5757 19 1 -3.1000 3.4242 3.9874 20 6 -3.1129 2.2890 5.8171 21 7 -2.3532 1.6626 6.6784 22 14 -4.8910 2.6705 6.2441 23 1 -5.7565 1.5439 5.8122 24 1 -5.0183 2.8581 7.7117 25 1 -5.3116 3.9130 5.5480 26 6 -0.6014 2.7590 3.1587 27 6 0.5529 2.1707 2.6947 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.7517 -1.7716 -1.2054 32 1 1.6055 -0.2619 -2.1369 33 1 4.1057 -2.6960 -1.4568 34 1 6.5343 -1.7005 -1.5128 35 1 6.3373 0.9549 -1.3557 36 1 2.1110 -1.6561 1.1950 37 1 0.4392 -0.7465 4.4048 38 1 -1.6279 0.2713 5.2562 39 1 -2.7134 1.3960 7.5387 40 1 -0.8889 3.7392 2.8082 41 1 1.1720 2.6913 1.9790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:04 Heat of formation + Delta-G solvation = -8.149075 kcal Electronic energy + Delta-G solvation = -26651.251301 eV Core-core repulsion = 22851.363973 eV Total energy + Delta-G solvation = -3799.887328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91159 -39.42122 -38.31711 -37.79031 -36.79824 -35.81739 -33.42463 -32.08366 -31.34789 -31.11765 -30.57040 -27.64971 -27.11437 -23.31805 -23.06886 -22.92522 -21.85774 -21.38989 -20.50668 -19.43656 -18.85132 -18.31847 -17.94548 -17.29170 -16.92366 -16.16449 -16.04773 -15.80301 -15.23212 -15.17783 -14.96235 -14.67999 -14.20464 -14.15951 -14.00148 -13.92609 -13.62118 -13.56657 -13.35501 -13.11943 -13.04208 -12.96008 -12.90234 -12.84330 -12.59173 -12.49599 -12.07609 -11.97796 -11.55482 -11.42730 -11.34891 -11.20949 -10.56688 -10.22142 -9.78825 -9.54819 -9.37909 -8.87788 -6.65475 -0.32538 0.47632 1.05020 1.12289 1.35647 1.42991 1.51104 1.75715 2.06163 2.10902 2.22689 2.52954 2.92750 3.46785 3.51916 3.62557 3.91683 4.11509 4.16817 4.25985 4.29311 4.32021 4.39128 4.50814 4.63299 4.84283 4.86410 4.92179 4.94850 4.99479 5.09782 5.21166 5.23117 5.25391 5.44789 5.51622 5.58899 5.76325 5.83989 5.92333 6.14959 6.17295 6.28980 6.48646 6.68027 6.80342 6.90003 8.07359 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.002992 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.265170 B = 9354.505083 C = 9688.694841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.140 3.860 3 H 0.076 0.924 4 C 0.128 3.872 5 N -0.374 5.374 6 C 0.052 3.948 7 C -0.292 4.292 8 C 0.021 3.979 9 N -0.331 5.331 10 N -1.102 6.102 11 S 2.718 3.282 12 O -1.000 7.000 13 O -1.012 7.012 14 C -0.789 4.789 15 C -0.019 4.019 16 C -0.205 4.205 17 C 0.115 3.885 18 C -0.465 4.465 19 H 0.093 0.907 20 C 0.034 3.966 21 N -0.799 5.799 22 Si 0.993 3.007 23 H -0.257 1.257 24 H -0.267 1.267 25 H -0.253 1.253 26 C -0.252 4.252 27 C 0.004 3.996 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.212 0.788 34 H 0.164 0.836 35 H 0.191 0.809 36 H 0.423 0.577 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.298 0.702 40 H 0.110 0.890 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -8.701 -14.639 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.032 3.968 3 H 0.094 0.906 4 C 0.006 3.994 5 N -0.157 5.157 6 C -0.094 4.094 7 C -0.322 4.322 8 C -0.164 4.164 9 N -0.153 5.153 10 N -0.863 5.863 11 S 2.814 3.186 12 O -0.990 6.990 13 O -1.002 7.002 14 C -0.883 4.883 15 C -0.039 4.039 16 C -0.225 4.225 17 C 0.111 3.889 18 C -0.492 4.492 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.422 5.422 22 Si 0.812 3.188 23 H -0.181 1.181 24 H -0.191 1.191 25 H -0.176 1.176 26 C -0.273 4.273 27 C -0.016 4.016 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.228 0.772 34 H 0.182 0.818 35 H 0.208 0.792 36 H 0.259 0.741 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.094 -7.600 -13.961 16.194 hybrid contribution -0.500 -0.459 0.750 1.012 sum 2.594 -8.059 -13.210 15.691 Atomic orbital electron populations 1.22319 0.92795 1.04396 1.03646 1.21122 0.95190 0.96606 0.83855 0.90551 1.22346 0.73885 1.04984 0.98175 1.48884 1.07194 1.03785 1.55815 1.23229 0.89878 0.95898 1.00397 1.21849 0.98914 0.93971 1.17442 1.24303 0.94698 0.97423 0.99978 1.77364 1.05452 1.07638 1.24819 1.55310 1.84126 1.19617 1.27208 1.00432 0.73741 0.72391 0.72077 1.93488 1.66251 1.57037 1.82218 1.93450 1.82916 1.63596 1.60278 1.29493 1.26900 1.09880 1.22000 1.20394 0.93144 0.97457 0.92863 1.21334 0.99213 0.96708 1.05270 1.18163 0.91198 0.90753 0.88763 1.20241 1.06751 1.19541 1.02630 0.88913 1.27043 1.04370 0.92135 0.95027 1.69867 1.38735 1.26856 1.06751 0.85028 0.75168 0.80281 0.78327 1.18143 1.19146 1.17646 1.21213 0.98087 1.00732 1.07237 1.20323 0.94346 0.92095 0.94847 0.89691 0.93109 0.89246 0.84075 0.86603 0.77180 0.81804 0.79206 0.74107 0.87056 0.87181 0.89070 0.87197 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.52 71.98 0.69 -2.97 16 2 C 0.14 3.28 3.03 44.99 0.14 3.42 16 3 H 0.08 2.29 7.42 -2.39 -0.02 2.27 16 4 C 0.13 2.05 6.06 86.38 0.52 2.57 16 5 N -0.37 -8.34 3.60 -348.09 -1.25 -9.60 16 6 C 0.05 0.93 11.45 83.54 0.96 1.89 16 7 C -0.29 -5.97 10.80 21.99 0.24 -5.73 16 8 C 0.02 0.55 12.03 85.24 1.02 1.57 16 9 N -0.33 -9.87 12.35 -57.02 -0.70 -10.57 16 10 N -1.10 -29.92 5.40 -169.38 -0.91 -30.84 16 11 S 2.72 106.15 5.71 -56.49 -0.32 105.83 16 12 O -1.00 -44.50 16.60 -128.00 -2.13 -46.62 16 13 O -1.01 -44.46 17.26 -128.00 -2.21 -46.67 16 14 C -0.79 -34.56 5.09 22.46 0.11 -34.45 16 15 C -0.02 -0.87 9.49 22.22 0.21 -0.66 16 16 C -0.20 -10.42 8.70 22.73 0.20 -10.22 16 17 C 0.11 5.87 5.58 -21.29 -0.12 5.75 16 18 C -0.46 -22.95 9.05 23.46 0.21 -22.73 16 19 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 20 C 0.03 1.55 5.14 85.26 0.44 1.98 16 21 N -0.80 -38.96 10.95 21.83 0.24 -38.72 16 22 Si 0.99 34.25 29.60 68.60 2.03 36.28 16 23 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 24 H -0.27 -8.84 7.11 99.48 0.71 -8.14 16 25 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 26 C -0.25 -11.94 9.80 22.73 0.22 -11.71 16 27 C 0.00 0.16 8.53 22.22 0.19 0.35 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.48 6.15 -2.39 -0.01 1.46 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.14 1.09 8.07 -2.39 -0.02 1.07 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.42 8.84 8.84 -96.75 -0.85 7.98 16 37 H 0.11 4.86 7.60 -2.91 -0.02 4.84 16 38 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 39 H 0.30 12.94 8.30 -92.71 -0.77 12.18 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.12 4.76 7.60 -2.91 -0.02 4.74 16 Total: -1.00 -73.83 361.74 -0.02 -73.85 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.21 Total: 37.99 kcal Atomic # 6 Polarization: -75.97 SS G_CDS: 5.03 Total: -70.94 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -2.63 Total: -89.72 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -4.33 Total: -93.29 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Atomic # 16 Polarization: 106.15 SS G_CDS: -0.32 Total: 105.83 kcal Total: -73.83 -0.02 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.701 kcal (2) G-P(sol) polarization free energy of solvation -73.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds