Wall clock time and date at job start Tue Mar 31 2020 18:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47064 * 2 1 4 4 N 1.46501 * 109.47552 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00082 * 264.75536 * 4 3 2 6 6 H 1.08002 * 120.00091 * 146.16301 * 5 4 3 7 7 C 1.38953 * 119.99907 * 326.15688 * 5 4 3 8 8 N 1.31409 * 120.00065 * 337.68258 * 7 5 4 9 9 Si 1.86798 * 119.99854 * 157.68594 * 7 5 4 10 10 H 1.48496 * 109.47205 * 90.00312 * 9 7 5 11 11 H 1.48510 * 109.46852 * 210.00156 * 9 7 5 12 12 H 1.48495 * 109.47141 * 329.99988 * 9 7 5 13 13 C 1.34779 * 119.99855 * 84.74664 * 4 3 2 14 14 O 1.21287 * 119.99889 * 180.02562 * 13 4 3 15 15 C 1.50707 * 120.00010 * 0.02562 * 13 4 3 16 16 C 1.52996 * 109.46882 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.46882 * 179.97438 * 16 15 13 18 18 N 1.30268 * 126.17719 * 89.97280 * 17 16 15 19 19 N 1.28660 * 109.56205 * 179.97438 * 18 17 16 20 20 C 1.31331 * 109.25664 * 0.02562 * 19 18 17 21 21 C 1.47691 * 126.39197 * 180.02562 * 20 19 18 22 22 C 1.39755 * 122.89402 * 0.04977 * 21 20 19 23 23 C 1.33094 * 113.74096 * 180.02562 * 22 21 20 24 24 S 1.75723 * 109.80907 * 359.97438 * 23 22 21 25 25 C 1.34699 * 122.88622 * 180.02562 * 21 20 19 26 26 O 1.34559 * 126.18165 * 270.27939 * 17 16 15 27 27 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47390 * 299.99718 * 1 2 3 29 29 H 1.09002 * 109.47409 * 60.00115 * 1 2 3 30 30 H 1.09000 * 109.46931 * 240.00195 * 2 1 3 31 31 H 1.09001 * 109.46888 * 119.99859 * 2 1 3 32 32 H 1.09003 * 109.47518 * 60.00046 * 3 2 1 33 33 H 1.09002 * 109.46914 * 300.00188 * 3 2 1 34 34 H 0.96999 * 120.00401 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46798 * 59.99902 * 15 13 4 36 36 H 1.09004 * 109.47035 * 299.99969 * 15 13 4 37 37 H 1.09001 * 109.47703 * 60.00189 * 16 15 13 38 38 H 1.09004 * 109.47043 * 299.99697 * 16 15 13 39 39 H 1.07993 * 123.12547 * 0.02562 * 22 21 20 40 40 H 1.08000 * 125.09713 * 180.26169 * 23 22 21 41 41 H 1.07993 * 124.75031 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6712 2.3195 2.2184 8 7 2.8002 3.2687 1.9595 9 14 4.2123 2.0029 3.9780 10 1 5.4016 2.8363 4.2878 11 1 3.1071 2.3530 4.9063 12 1 4.5580 0.5677 4.1389 13 6 4.1793 1.3356 -1.1614 14 8 5.3922 1.3352 -1.1609 15 6 3.4263 1.2164 -2.4614 16 6 4.4211 1.1091 -3.6189 17 6 3.6681 0.9893 -4.9189 18 7 3.2838 1.9752 -5.6786 19 7 2.6683 1.5109 -6.7086 20 6 2.6379 0.1997 -6.6403 21 6 2.0252 -0.7151 -7.6247 22 6 1.3862 -0.2655 -8.7835 23 6 0.8991 -1.2452 -9.5413 24 16 1.2416 -2.7999 -8.7973 25 6 2.0347 -2.0546 -7.4833 26 8 3.2661 -0.1551 -5.5015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4378 3.8048 2.6822 35 1 2.8000 2.0976 -2.6006 36 1 2.7994 0.3250 -2.4378 37 1 5.0471 0.2277 -3.4796 38 1 5.0483 2.0003 -3.6427 39 1 1.2960 0.7797 -9.0400 40 1 0.3761 -1.1059 -10.4759 41 1 2.4818 -2.5828 -6.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:29 Heat of formation + Delta-G solvation = 33.120254 kcal Electronic energy + Delta-G solvation = -25639.787772 eV Core-core repulsion = 21841.690016 eV Total energy + Delta-G solvation = -3798.097756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.12277 -38.79329 -38.49127 -36.15201 -35.48085 -33.91442 -32.75729 -31.28399 -30.92700 -29.48644 -26.58917 -25.67567 -24.83052 -23.82177 -23.13597 -21.83618 -20.99320 -19.87657 -18.86422 -18.34549 -17.36123 -17.16681 -16.92170 -16.29075 -15.79790 -15.03932 -14.76333 -14.44653 -14.05440 -13.89580 -13.83264 -13.73206 -13.37341 -13.15785 -12.96041 -12.76627 -12.45454 -12.36876 -11.95161 -11.86211 -11.65393 -11.45787 -11.43577 -11.36096 -11.10641 -10.98876 -10.81169 -10.64532 -10.37944 -10.27331 -10.17515 -9.95576 -9.35723 -8.98137 -8.61975 -8.44491 -7.53753 -6.36976 -3.98150 0.20445 1.08194 1.11643 1.44309 2.06663 2.16691 2.73987 3.14484 3.24048 3.29134 3.77268 3.82452 4.12448 4.34225 4.50673 4.74932 4.79178 4.95452 4.98415 5.11104 5.20061 5.27070 5.35115 5.48439 5.54737 5.62455 5.65623 5.72558 5.75788 5.84515 5.87596 6.03783 6.13548 6.17715 6.27276 6.35175 6.43672 6.57097 6.87768 7.24995 7.56327 8.18768 8.28531 8.45005 9.12887 9.36379 9.94072 10.66544 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002346 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.439160 B =11930.993125 C =12524.666594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.099 3.901 4 N -0.436 5.436 5 C -0.309 4.309 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.867 5.867 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.459 3.541 14 O -0.584 6.584 15 C -0.132 4.132 16 C -0.008 4.008 17 C 0.186 3.814 18 N -0.285 5.285 19 N -0.272 5.272 20 C 0.210 3.790 21 C -0.034 4.034 22 C -0.095 4.095 23 C -0.230 4.230 24 S 0.204 5.796 25 C -0.217 4.217 26 O -0.220 6.220 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.268 0.732 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -11.614 -18.553 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.026 4.026 4 N -0.154 5.154 5 C -0.437 4.437 6 H 0.111 0.889 7 C -0.168 4.168 8 N -0.505 5.505 9 Si 0.743 3.257 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.468 6.468 15 C -0.174 4.174 16 C -0.046 4.046 17 C -0.024 4.024 18 N -0.132 5.132 19 N -0.120 5.120 20 C 0.000 4.000 21 C -0.050 4.050 22 C -0.124 4.124 23 C -0.366 4.366 24 S 0.469 5.531 25 C -0.357 4.357 26 O -0.100 6.100 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.176 0.824 40 H 0.192 0.808 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.739 -11.733 -19.245 23.831 hybrid contribution 0.516 0.327 1.774 1.876 sum -7.223 -11.406 -17.471 22.079 Atomic orbital electron populations 1.21679 0.96308 1.00689 1.01625 1.21971 0.94948 0.99294 1.01633 1.21712 0.81955 0.94531 1.04355 1.43490 1.04672 1.62345 1.04850 1.19446 1.06890 1.28638 0.88678 0.88910 1.25338 0.97247 0.93665 1.00562 1.69919 1.30783 1.16752 1.33012 0.86094 0.78337 0.79141 0.82113 1.20236 1.20794 1.19397 1.19975 0.87921 0.82967 0.84491 1.90530 1.13867 1.55655 1.86768 1.21653 0.98506 1.03854 0.93341 1.20068 0.95807 1.06866 0.81909 1.28444 0.97541 0.77769 0.98618 1.74415 1.12188 1.26267 1.00289 1.74735 1.15637 1.05504 1.16133 1.24804 0.97135 0.91713 0.86342 1.16243 1.04701 0.89742 0.94354 1.20083 0.98117 1.01818 0.92419 1.25656 1.09599 0.95353 1.05958 1.83206 1.49762 1.08129 1.11987 1.25352 1.06765 0.97668 1.05917 1.84877 1.56781 1.37364 1.30972 0.93444 0.92623 0.93226 0.93344 0.91606 0.86666 0.93389 0.92145 0.89166 0.89983 0.87803 0.86101 0.82434 0.80769 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.47 6.17 -26.73 -0.16 -2.63 16 3 C 0.10 2.09 4.71 -4.04 -0.02 2.07 16 4 N -0.44 -10.72 2.56 -114.81 -0.29 -11.01 16 5 C -0.31 -8.36 8.98 -14.93 -0.13 -8.49 16 6 H 0.09 2.63 7.70 -52.49 -0.40 2.22 16 7 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -22.93 11.33 55.50 0.63 -22.30 16 9 Si 0.92 20.22 29.61 -169.99 -5.03 15.18 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.46 10.71 7.59 -10.98 -0.08 10.63 16 14 O -0.58 -15.42 15.80 5.55 0.09 -15.34 16 15 C -0.13 -2.37 4.29 -27.88 -0.12 -2.49 16 16 C -0.01 -0.12 5.13 -27.88 -0.14 -0.27 16 17 C 0.19 2.98 7.73 -12.94 -0.10 2.88 16 18 N -0.29 -4.98 12.21 32.59 0.40 -4.58 16 19 N -0.27 -4.46 12.17 32.05 0.39 -4.07 16 20 C 0.21 3.02 8.08 -13.91 -0.11 2.91 16 21 C -0.03 -0.38 5.79 -106.72 -0.62 -1.00 16 22 C -0.10 -0.86 10.03 -40.80 -0.41 -1.27 16 23 C -0.23 -1.49 11.19 28.94 0.32 -1.17 16 24 S 0.20 1.25 23.09 -107.50 -2.48 -1.23 16 25 C -0.22 -1.91 10.72 29.48 0.32 -1.60 16 26 O -0.22 -3.30 10.84 3.60 0.04 -3.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.81 6.60 -51.93 -0.34 0.47 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.12 2.72 5.34 -51.93 -0.28 2.44 16 33 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.09 1.60 7.41 -51.93 -0.38 1.21 16 36 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 37 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 38 H 0.12 1.99 8.10 -51.93 -0.42 1.57 16 39 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -31.77 365.67 -6.77 -38.54 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.03 Total: 3.86 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.98 Total: -1.31 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.12 Total: -41.96 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.13 Total: -18.60 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.48 Total: -1.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.77 -6.77 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.657 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds