Wall clock time and date at job start Tue Mar 31 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47064 * 2 1 4 4 N 1.46501 * 109.47552 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00082 * 264.75536 * 4 3 2 6 6 H 1.08002 * 120.00091 * 146.16301 * 5 4 3 7 7 C 1.38953 * 119.99907 * 326.15688 * 5 4 3 8 8 N 1.31409 * 120.00065 * 337.68258 * 7 5 4 9 9 Si 1.86798 * 119.99854 * 157.68594 * 7 5 4 10 10 H 1.48496 * 109.47205 * 90.00312 * 9 7 5 11 11 H 1.48510 * 109.46852 * 210.00156 * 9 7 5 12 12 H 1.48495 * 109.47141 * 329.99988 * 9 7 5 13 13 C 1.34779 * 119.99855 * 84.74664 * 4 3 2 14 14 O 1.21287 * 119.99889 * 180.02562 * 13 4 3 15 15 C 1.50707 * 120.00010 * 0.02562 * 13 4 3 16 16 C 1.52996 * 109.46882 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.46882 * 179.97438 * 16 15 13 18 18 N 1.30268 * 126.17719 * 89.97280 * 17 16 15 19 19 N 1.28660 * 109.56205 * 179.97438 * 18 17 16 20 20 C 1.31331 * 109.25664 * 0.02562 * 19 18 17 21 21 C 1.47691 * 126.39197 * 180.02562 * 20 19 18 22 22 C 1.39755 * 122.89402 * 0.04977 * 21 20 19 23 23 C 1.33094 * 113.74096 * 180.02562 * 22 21 20 24 24 S 1.75723 * 109.80907 * 359.97438 * 23 22 21 25 25 C 1.34699 * 122.88622 * 180.02562 * 21 20 19 26 26 O 1.34559 * 126.18165 * 270.27939 * 17 16 15 27 27 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47390 * 299.99718 * 1 2 3 29 29 H 1.09002 * 109.47409 * 60.00115 * 1 2 3 30 30 H 1.09000 * 109.46931 * 240.00195 * 2 1 3 31 31 H 1.09001 * 109.46888 * 119.99859 * 2 1 3 32 32 H 1.09003 * 109.47518 * 60.00046 * 3 2 1 33 33 H 1.09002 * 109.46914 * 300.00188 * 3 2 1 34 34 H 0.96999 * 120.00401 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46798 * 59.99902 * 15 13 4 36 36 H 1.09004 * 109.47035 * 299.99969 * 15 13 4 37 37 H 1.09001 * 109.47703 * 60.00189 * 16 15 13 38 38 H 1.09004 * 109.47043 * 299.99697 * 16 15 13 39 39 H 1.07993 * 123.12547 * 0.02562 * 22 21 20 40 40 H 1.08000 * 125.09713 * 180.26169 * 23 22 21 41 41 H 1.07993 * 124.75031 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6712 2.3195 2.2184 8 7 2.8002 3.2687 1.9595 9 14 4.2123 2.0029 3.9780 10 1 5.4016 2.8363 4.2878 11 1 3.1071 2.3530 4.9063 12 1 4.5580 0.5677 4.1389 13 6 4.1793 1.3356 -1.1614 14 8 5.3922 1.3352 -1.1609 15 6 3.4263 1.2164 -2.4614 16 6 4.4211 1.1091 -3.6189 17 6 3.6681 0.9893 -4.9189 18 7 3.2838 1.9752 -5.6786 19 7 2.6683 1.5109 -6.7086 20 6 2.6379 0.1997 -6.6403 21 6 2.0252 -0.7151 -7.6247 22 6 1.3862 -0.2655 -8.7835 23 6 0.8991 -1.2452 -9.5413 24 16 1.2416 -2.7999 -8.7973 25 6 2.0347 -2.0546 -7.4833 26 8 3.2661 -0.1551 -5.5015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4378 3.8048 2.6822 35 1 2.8000 2.0976 -2.6006 36 1 2.7994 0.3250 -2.4378 37 1 5.0471 0.2277 -3.4796 38 1 5.0483 2.0003 -3.6427 39 1 1.2960 0.7797 -9.0400 40 1 0.3761 -1.1059 -10.4759 41 1 2.4818 -2.5828 -6.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:28 Heat of formation + Delta-G solvation = 11.047243 kcal Electronic energy + Delta-G solvation = -25640.744929 eV Core-core repulsion = 21841.690016 eV Total energy + Delta-G solvation = -3799.054913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.30038 -40.59736 -39.18039 -37.34183 -37.26247 -35.35270 -34.43264 -33.03521 -31.96948 -30.41198 -28.16292 -27.10145 -26.11997 -25.28882 -24.08395 -23.07887 -22.46202 -20.68524 -20.58679 -19.04170 -18.84264 -18.51597 -18.24090 -17.84141 -17.00271 -16.66825 -16.30706 -16.09318 -15.44922 -15.37651 -14.78057 -14.52683 -14.52379 -14.32044 -14.01710 -13.92618 -13.64377 -13.55764 -13.41522 -13.36611 -13.15480 -13.07246 -12.98570 -12.61611 -12.51424 -12.22020 -12.10355 -12.07267 -11.99390 -11.91304 -11.51424 -11.21716 -10.88931 -10.41130 -9.95981 -9.47106 -9.29991 -8.34618 -6.03880 -0.61884 0.23425 0.49039 0.85477 1.01350 1.07381 1.36943 1.42326 1.54618 1.82824 1.99463 2.28714 2.64830 3.00192 3.09665 3.31705 3.65879 3.76387 3.92344 3.98194 4.08799 4.12505 4.18025 4.29305 4.36928 4.39740 4.47894 4.50425 4.58314 4.72488 4.82170 4.86665 4.93373 4.97961 5.12148 5.12780 5.22408 5.27758 5.38942 5.48135 5.59540 6.19737 6.50539 7.10078 7.16102 7.45945 8.03337 8.67479 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002346 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.439160 B =11930.993125 C =12524.666594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.450 5.450 5 C -0.341 4.341 6 H 0.068 0.932 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.979 3.021 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.266 1.266 13 C 0.449 3.551 14 O -0.623 6.623 15 C -0.116 4.116 16 C 0.003 3.997 17 C 0.183 3.817 18 N -0.308 5.308 19 N -0.304 5.304 20 C 0.227 3.773 21 C -0.071 4.071 22 C -0.118 4.118 23 C -0.220 4.220 24 S 0.278 5.722 25 C -0.224 4.224 26 O -0.221 6.221 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.152 0.848 40 H 0.205 0.795 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -13.842 -19.952 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C -0.024 4.024 4 N -0.168 5.168 5 C -0.469 4.469 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.525 5.525 9 Si 0.803 3.197 10 H -0.204 1.204 11 H -0.193 1.193 12 H -0.191 1.191 13 C 0.238 3.762 14 O -0.510 6.510 15 C -0.156 4.156 16 C -0.035 4.035 17 C -0.028 4.028 18 N -0.154 5.154 19 N -0.151 5.151 20 C 0.018 3.982 21 C -0.087 4.087 22 C -0.146 4.146 23 C -0.356 4.356 24 S 0.545 5.455 25 C -0.364 4.364 26 O -0.101 6.101 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.170 0.830 40 H 0.222 0.778 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.716 -13.954 -20.667 26.763 hybrid contribution 1.067 0.893 2.055 2.482 sum -8.649 -13.061 -18.612 24.327 Atomic orbital electron populations 1.21635 0.93531 1.02413 1.02025 1.21871 0.97239 0.96531 1.01368 1.21781 0.80085 0.96862 1.03654 1.43765 1.06039 1.62296 1.04679 1.19406 1.07038 1.29785 0.90666 0.91401 1.26064 0.97135 0.92971 1.03796 1.69990 1.31252 1.16962 1.34255 0.85166 0.78097 0.78932 0.77553 1.20441 1.19292 1.19086 1.20788 0.87817 0.81695 0.85888 1.90492 1.15759 1.57169 1.87625 1.21482 0.98378 1.04957 0.90830 1.19863 0.95280 1.06943 0.81459 1.28133 0.98088 0.77983 0.98573 1.74340 1.12773 1.27302 1.00985 1.74686 1.17375 1.06674 1.16404 1.25524 0.95062 0.91759 0.85902 1.16488 1.07133 0.90187 0.94936 1.20090 0.99511 1.02384 0.92630 1.26067 1.07982 0.95179 1.06339 1.83043 1.46861 1.06448 1.09190 1.25654 1.06277 0.97244 1.07236 1.84873 1.57026 1.36847 1.31326 0.91043 0.93068 0.92022 0.92201 0.93267 0.89037 0.92226 0.91650 0.88816 0.87789 0.87018 0.86933 0.83017 0.77761 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.52 6.17 30.59 0.19 -4.34 16 3 C 0.10 4.24 4.71 86.38 0.41 4.65 16 4 N -0.45 -22.69 2.56 -635.53 -1.63 -24.31 16 5 C -0.34 -19.07 8.98 84.04 0.75 -18.32 16 6 H 0.07 4.04 7.70 -2.91 -0.02 4.02 16 7 C 0.00 0.15 4.92 84.93 0.42 0.57 16 8 N -0.89 -47.48 11.33 21.66 0.25 -47.24 16 9 Si 0.98 41.88 29.61 68.60 2.03 43.91 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 C 0.45 21.47 7.59 87.66 0.67 22.13 16 14 O -0.62 -34.16 15.80 -3.05 -0.05 -34.20 16 15 C -0.12 -4.13 4.29 29.85 0.13 -4.00 16 16 C 0.00 0.11 5.13 29.85 0.15 0.27 16 17 C 0.18 5.89 7.73 88.34 0.68 6.57 16 18 N -0.31 -10.95 12.21 -165.28 -2.02 -12.97 16 19 N -0.30 -10.13 12.17 -166.32 -2.02 -12.16 16 20 C 0.23 6.50 8.08 87.27 0.70 7.20 16 21 C -0.07 -1.48 5.79 -21.23 -0.12 -1.60 16 22 C -0.12 -1.96 10.03 21.48 0.22 -1.75 16 23 C -0.22 -2.15 11.19 66.67 0.75 -1.41 16 24 S 0.28 2.39 23.09 -56.49 -1.30 1.09 16 25 C -0.22 -3.44 10.72 67.01 0.72 -2.72 16 26 O -0.22 -6.52 10.84 -10.04 -0.11 -6.63 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.90 6.60 -2.39 -0.02 1.89 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 4.38 5.34 -2.39 -0.01 4.37 16 33 H 0.06 2.34 6.66 -2.39 -0.02 2.33 16 34 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 35 H 0.09 3.30 7.41 -2.39 -0.02 3.29 16 36 H 0.10 3.24 6.54 -2.38 -0.02 3.23 16 37 H 0.11 3.42 8.10 -2.39 -0.02 3.40 16 38 H 0.11 3.84 8.10 -2.38 -0.02 3.82 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -71.49 365.67 2.58 -68.91 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.06 Total: 19.35 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.37 Total: 4.27 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -5.42 Total: -96.68 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.16 Total: -40.84 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.30 Total: 1.09 kcal Total: -71.49 2.58 -68.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.955 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds