Wall clock time and date at job start Tue Mar 31 2020 19:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.07994 * 120.00467 * 114.48798 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48500 * 109.47135 * 269.72638 * 8 6 4 10 10 H 1.48504 * 109.46999 * 29.72649 * 8 6 4 11 11 H 1.48497 * 109.47009 * 149.72539 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.34777 * 119.99874 * 119.99814 * 12 2 1 15 15 O 1.21283 * 119.99926 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99795 * 179.97438 * 14 12 2 17 17 C 1.53005 * 109.47275 * 179.97438 * 16 14 12 18 18 C 1.50695 * 109.47275 * 179.97438 * 17 16 14 19 19 N 1.30268 * 126.17931 * 89.69420 * 18 17 16 20 20 N 1.28661 * 109.56600 * 179.82125 * 19 18 17 21 21 C 1.31341 * 109.25463 * 0.44503 * 20 19 18 22 22 C 1.47680 * 126.39355 * 179.76854 * 21 20 19 23 23 C 1.39758 * 122.89341 * 359.95354 * 22 21 20 24 24 C 1.33102 * 113.74095 * 180.02562 * 23 22 21 25 25 S 1.75723 * 109.81050 * 359.97438 * 24 23 22 26 26 C 1.34695 * 122.88952 * 179.66575 * 22 21 20 27 27 O 1.34566 * 126.18069 * 269.99742 * 18 17 16 28 28 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 29 29 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 30 30 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 31 31 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 32 32 H 1.09005 * 109.47467 * 89.99947 * 13 12 2 33 33 H 1.08995 * 109.47707 * 210.00376 * 13 12 2 34 34 H 1.09011 * 109.46948 * 330.00192 * 13 12 2 35 35 H 1.09002 * 109.47437 * 299.99777 * 16 14 12 36 36 H 1.09005 * 109.47187 * 60.00390 * 16 14 12 37 37 H 1.09003 * 109.47186 * 300.00569 * 17 16 14 38 38 H 1.09005 * 109.46643 * 60.00120 * 17 16 14 39 39 H 1.07997 * 123.13127 * 359.96929 * 23 22 21 40 40 H 1.07999 * 125.09458 * 179.97438 * 24 23 22 41 41 H 1.07997 * 124.74525 * 359.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2958 -0.7462 -3.3136 17 6 4.1452 0.2157 -4.1469 18 6 4.6484 -0.4951 -5.3767 19 7 4.0439 -0.5601 -6.5288 20 7 4.7587 -1.2425 -7.3526 21 6 5.8503 -1.6485 -6.7455 22 6 6.9308 -2.4630 -7.3373 23 6 6.9068 -2.9088 -8.6616 24 6 7.9724 -3.6290 -9.0040 25 16 9.0628 -3.7680 -7.6329 26 6 8.0269 -2.8354 -6.6487 27 8 5.8007 -1.1821 -5.4815 28 1 -0.3633 -1.0217 -0.1115 29 1 -0.3633 0.4141 0.9405 30 1 -0.3634 0.6073 -0.8290 31 1 2.1679 -1.8620 3.4633 32 1 0.7375 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 3.9016 -1.6023 -3.0166 36 1 2.4482 -1.0891 -3.9070 37 1 3.5391 1.0716 -4.4438 38 1 4.9928 0.5590 -3.5537 39 1 6.0984 -2.6901 -9.3435 40 1 8.1416 -4.0630 -9.9783 41 1 8.2218 -2.5810 -5.6174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:04 Heat of formation + Delta-G solvation = 37.439638 kcal Electronic energy + Delta-G solvation = -25294.914080 eV Core-core repulsion = 21497.003627 eV Total energy + Delta-G solvation = -3797.910453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.33162 -39.42808 -38.62038 -36.35918 -35.74965 -34.25942 -32.86877 -31.30619 -30.33047 -29.49468 -26.48257 -26.12700 -24.89337 -24.57169 -23.37710 -22.25122 -20.75420 -20.00351 -18.49182 -18.42392 -17.62953 -17.48208 -17.36757 -16.69574 -16.06855 -15.46324 -15.42874 -14.40664 -14.13874 -13.92793 -13.85090 -13.63490 -13.47708 -13.11726 -13.06778 -12.68484 -12.62642 -12.49712 -12.37122 -12.08453 -11.93504 -11.80157 -11.57972 -11.49744 -11.43163 -11.25003 -11.06658 -10.58000 -10.38058 -10.13069 -9.65393 -9.46789 -9.24477 -9.06845 -8.69593 -8.41813 -7.86508 -6.52377 -4.18916 0.06981 0.95078 0.97735 1.34357 1.87559 1.95964 2.57655 3.12618 3.39771 3.44593 3.47747 3.57724 3.82301 4.17297 4.36421 4.44231 4.59245 4.70743 4.81038 4.90687 4.98746 5.07401 5.11280 5.18196 5.28606 5.43432 5.50211 5.61148 5.64076 5.73012 5.75076 5.83487 5.87843 6.21838 6.31230 6.39107 6.55629 6.89574 7.09867 7.36448 7.78842 8.07187 8.20774 8.29211 8.66958 8.85939 9.49169 10.83985 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002069 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.926750 B =13532.123892 C =14041.816909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.233 3.767 3 H 0.058 0.942 4 C -0.611 4.611 5 H 0.061 0.939 6 C 0.037 3.963 7 N -0.901 5.901 8 Si 1.039 2.961 9 H -0.283 1.283 10 H -0.269 1.269 11 H -0.285 1.285 12 N -0.585 5.585 13 C 0.082 3.918 14 C 0.509 3.491 15 O -0.554 6.554 16 C -0.138 4.138 17 C -0.010 4.010 18 C 0.180 3.820 19 N -0.282 5.282 20 N -0.273 5.273 21 C 0.218 3.782 22 C -0.039 4.039 23 C -0.095 4.095 24 C -0.230 4.230 25 S 0.210 5.790 26 C -0.216 4.216 27 O -0.219 6.219 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.640 -7.141 -23.894 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.131 3.869 3 H 0.076 0.924 4 C -0.649 4.649 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.866 3.134 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.211 1.211 12 N -0.315 5.315 13 C -0.062 4.062 14 C 0.295 3.705 15 O -0.433 6.433 16 C -0.179 4.179 17 C -0.048 4.048 18 C -0.031 4.031 19 N -0.129 5.129 20 N -0.121 5.121 21 C 0.008 3.992 22 C -0.055 4.055 23 C -0.125 4.125 24 C -0.366 4.366 25 S 0.476 5.524 26 C -0.356 4.356 27 O -0.099 6.099 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.176 0.824 40 H 0.193 0.807 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.900 -5.906 -23.345 26.861 hybrid contribution -0.203 -0.919 -0.294 0.986 sum 11.697 -6.825 -23.639 27.243 Atomic orbital electron populations 1.22441 0.98633 1.00100 1.00047 1.19280 0.90415 0.94855 0.82327 0.92437 1.22166 1.40630 1.11159 0.90948 0.92096 1.25690 0.94089 1.05339 0.91734 1.70822 1.43726 1.08208 1.30710 0.84174 0.77521 0.75565 0.76095 1.20975 1.19480 1.21066 1.47955 1.48836 1.11756 1.22943 1.21658 0.99016 0.82859 1.02668 1.20098 0.79345 0.87032 0.84001 1.90661 1.58647 1.17019 1.76987 1.21680 1.01043 0.99293 0.95852 1.20025 1.01197 0.96698 0.86923 1.28210 0.81194 0.94637 0.99030 1.74396 1.24268 1.15405 0.98823 1.74760 1.01541 1.10883 1.24931 1.24849 0.96687 0.98410 0.79224 1.16239 0.92140 1.02826 0.94285 1.20073 0.99855 0.98318 0.94206 1.25682 0.99082 1.07885 1.03928 1.83272 1.21344 1.47092 1.00725 1.25385 0.99071 1.05018 1.06125 1.84887 1.39504 1.53681 1.31783 0.93522 0.92118 0.95427 0.92164 0.93507 0.92616 0.89847 0.88727 0.88334 0.85933 0.87380 0.82433 0.80703 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.57 37.16 0.32 -2.96 16 2 C 0.23 5.51 2.19 -69.08 -0.15 5.36 16 3 H 0.06 1.49 5.53 -51.93 -0.29 1.20 16 4 C -0.61 -16.47 8.37 -34.44 -0.29 -16.76 16 5 H 0.06 1.74 7.38 -52.49 -0.39 1.36 16 6 C 0.04 1.05 5.33 -17.82 -0.09 0.96 16 7 N -0.90 -26.86 13.70 55.43 0.76 -26.10 16 8 Si 1.04 24.96 26.17 -169.99 -4.45 20.51 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.27 -5.99 5.53 56.52 0.31 -5.68 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.58 -11.68 2.75 -175.26 -0.48 -12.17 16 13 C 0.08 1.31 9.11 59.85 0.55 1.85 16 14 C 0.51 9.50 7.67 -10.99 -0.08 9.42 16 15 O -0.55 -12.16 15.31 5.55 0.09 -12.07 16 16 C -0.14 -1.85 4.23 -27.88 -0.12 -1.96 16 17 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 18 C 0.18 2.39 7.73 -12.94 -0.10 2.29 16 19 N -0.28 -4.20 12.21 32.59 0.40 -3.80 16 20 N -0.27 -3.92 12.17 32.05 0.39 -3.53 16 21 C 0.22 2.75 8.08 -13.91 -0.11 2.64 16 22 C -0.04 -0.37 5.79 -106.73 -0.62 -0.99 16 23 C -0.10 -0.75 10.03 -40.80 -0.41 -1.16 16 24 C -0.23 -1.27 11.19 28.95 0.32 -0.95 16 25 S 0.21 1.11 23.09 -107.50 -2.48 -1.37 16 26 C -0.22 -1.67 10.72 29.48 0.32 -1.36 16 27 O -0.22 -2.84 10.85 3.56 0.04 -2.80 16 28 H 0.05 0.93 7.47 -51.93 -0.39 0.54 16 29 H 0.06 1.33 5.06 -51.93 -0.26 1.06 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 34 H 0.08 1.49 6.92 -51.92 -0.36 1.13 16 35 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 36 H 0.10 1.19 8.11 -51.93 -0.42 0.76 16 37 H 0.12 1.53 8.10 -51.93 -0.42 1.11 16 38 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -33.54 359.82 -5.96 -39.49 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.02 Total: 0.31 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.62 Total: -3.88 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 1.06 Total: -45.60 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.12 Total: -14.87 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.45 Total: 20.51 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.54 -5.96 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.931 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds