Wall clock time and date at job start Tue Mar 31 2020 19:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.07994 * 120.00467 * 114.48798 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48500 * 109.47135 * 269.72638 * 8 6 4 10 10 H 1.48504 * 109.46999 * 29.72649 * 8 6 4 11 11 H 1.48497 * 109.47009 * 149.72539 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.34777 * 119.99874 * 119.99814 * 12 2 1 15 15 O 1.21283 * 119.99926 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99795 * 179.97438 * 14 12 2 17 17 C 1.53005 * 109.47275 * 179.97438 * 16 14 12 18 18 C 1.50695 * 109.47275 * 179.97438 * 17 16 14 19 19 N 1.30268 * 126.17931 * 89.69420 * 18 17 16 20 20 N 1.28661 * 109.56600 * 179.82125 * 19 18 17 21 21 C 1.31341 * 109.25463 * 0.44503 * 20 19 18 22 22 C 1.47680 * 126.39355 * 179.76854 * 21 20 19 23 23 C 1.39758 * 122.89341 * 359.95354 * 22 21 20 24 24 C 1.33102 * 113.74095 * 180.02562 * 23 22 21 25 25 S 1.75723 * 109.81050 * 359.97438 * 24 23 22 26 26 C 1.34695 * 122.88952 * 179.66575 * 22 21 20 27 27 O 1.34566 * 126.18069 * 269.99742 * 18 17 16 28 28 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 29 29 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 30 30 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 31 31 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 32 32 H 1.09005 * 109.47467 * 89.99947 * 13 12 2 33 33 H 1.08995 * 109.47707 * 210.00376 * 13 12 2 34 34 H 1.09011 * 109.46948 * 330.00192 * 13 12 2 35 35 H 1.09002 * 109.47437 * 299.99777 * 16 14 12 36 36 H 1.09005 * 109.47187 * 60.00390 * 16 14 12 37 37 H 1.09003 * 109.47186 * 300.00569 * 17 16 14 38 38 H 1.09005 * 109.46643 * 60.00120 * 17 16 14 39 39 H 1.07997 * 123.13127 * 359.96929 * 23 22 21 40 40 H 1.07999 * 125.09458 * 179.97438 * 24 23 22 41 41 H 1.07997 * 124.74525 * 359.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2958 -0.7462 -3.3136 17 6 4.1452 0.2157 -4.1469 18 6 4.6484 -0.4951 -5.3767 19 7 4.0439 -0.5601 -6.5288 20 7 4.7587 -1.2425 -7.3526 21 6 5.8503 -1.6485 -6.7455 22 6 6.9308 -2.4630 -7.3373 23 6 6.9068 -2.9088 -8.6616 24 6 7.9724 -3.6290 -9.0040 25 16 9.0628 -3.7680 -7.6329 26 6 8.0269 -2.8354 -6.6487 27 8 5.8007 -1.1821 -5.4815 28 1 -0.3633 -1.0217 -0.1115 29 1 -0.3633 0.4141 0.9405 30 1 -0.3634 0.6073 -0.8290 31 1 2.1679 -1.8620 3.4633 32 1 0.7375 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 3.9016 -1.6023 -3.0166 36 1 2.4482 -1.0891 -3.9070 37 1 3.5391 1.0716 -4.4438 38 1 4.9928 0.5590 -3.5537 39 1 6.0984 -2.6901 -9.3435 40 1 8.1416 -4.0630 -9.9783 41 1 8.2218 -2.5810 -5.6174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:03 Heat of formation + Delta-G solvation = 11.948891 kcal Electronic energy + Delta-G solvation = -25296.019442 eV Core-core repulsion = 21497.003627 eV Total energy + Delta-G solvation = -3799.015815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.31828 -40.93225 -39.19954 -37.39482 -37.36043 -35.42332 -34.80110 -32.52490 -31.64059 -30.35032 -27.76379 -27.28388 -26.73294 -25.62901 -24.19875 -23.32995 -22.32562 -20.65636 -20.02903 -19.54803 -19.04330 -18.57783 -18.32500 -17.98131 -17.06271 -16.98260 -16.58833 -15.67876 -15.51082 -15.19624 -14.80859 -14.56211 -14.43692 -14.39016 -14.03685 -14.02628 -13.70468 -13.62457 -13.60309 -13.54185 -13.31023 -13.18657 -13.10045 -12.92874 -12.50167 -12.44084 -12.11833 -11.97166 -11.92627 -11.47583 -11.24279 -11.12817 -10.75794 -10.54430 -9.98148 -9.53004 -9.32741 -8.70918 -6.40235 -0.64209 0.21432 0.46967 0.84046 0.99221 1.05813 1.47193 1.49990 1.68068 1.69261 1.80867 2.22131 2.44856 2.72191 3.03275 3.25706 3.54776 3.64726 3.79688 3.91845 4.03634 4.14488 4.19619 4.34862 4.37617 4.45291 4.47849 4.54252 4.61052 4.70105 4.72281 4.80564 4.83678 4.91340 4.93908 5.11445 5.13833 5.19729 5.37231 5.67190 5.80760 6.03203 6.54301 6.68347 7.07841 7.23086 7.37668 8.61648 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022742 B = 0.002069 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.926750 B =13532.123892 C =14041.816909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.037 0.963 4 C -0.603 4.603 5 H 0.033 0.967 6 C -0.011 4.011 7 N -0.934 5.934 8 Si 1.073 2.927 9 H -0.283 1.283 10 H -0.242 1.242 11 H -0.280 1.280 12 N -0.597 5.597 13 C 0.080 3.920 14 C 0.504 3.496 15 O -0.591 6.591 16 C -0.122 4.122 17 C -0.002 4.002 18 C 0.180 3.820 19 N -0.303 5.303 20 N -0.303 5.303 21 C 0.229 3.771 22 C -0.071 4.071 23 C -0.117 4.117 24 C -0.221 4.221 25 S 0.273 5.727 26 C -0.225 4.225 27 O -0.223 6.223 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.154 0.846 40 H 0.205 0.795 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -7.940 -26.217 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.055 0.945 4 C -0.641 4.641 5 H 0.051 0.949 6 C -0.210 4.210 7 N -0.569 5.569 8 Si 0.895 3.105 9 H -0.210 1.210 10 H -0.166 1.166 11 H -0.206 1.206 12 N -0.327 5.327 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.473 6.473 16 C -0.163 4.163 17 C -0.041 4.041 18 C -0.031 4.031 19 N -0.149 5.149 20 N -0.150 5.150 21 C 0.019 3.981 22 C -0.088 4.088 23 C -0.145 4.145 24 C -0.356 4.356 25 S 0.539 5.461 26 C -0.365 4.365 27 O -0.103 6.103 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.172 0.828 40 H 0.222 0.778 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.696 -6.741 -25.720 29.465 hybrid contribution -0.244 -0.821 0.339 0.921 sum 12.452 -7.562 -25.382 29.265 Atomic orbital electron populations 1.22303 0.96531 1.01274 1.00496 1.19006 0.91958 0.93587 0.82631 0.94549 1.22330 1.39249 1.09927 0.92599 0.94886 1.26874 0.94114 1.08228 0.91815 1.70930 1.46495 1.07801 1.31702 0.83754 0.77675 0.71709 0.77360 1.20978 1.16572 1.20573 1.48012 1.49287 1.13260 1.22149 1.21839 1.01608 0.80626 1.02205 1.20897 0.78199 0.86746 0.84889 1.90639 1.59723 1.18904 1.78052 1.21591 1.02009 0.99174 0.93489 1.19935 1.01141 0.96428 0.86564 1.28142 0.81329 0.94812 0.98789 1.74325 1.25113 1.16049 0.99419 1.74712 1.02587 1.12344 1.25380 1.25457 0.96652 0.97213 0.78753 1.16486 0.92424 1.04415 0.95445 1.20101 1.00989 0.99752 0.93643 1.26077 0.98022 1.06203 1.05295 1.83128 1.19311 1.44520 0.99116 1.25647 0.99108 1.04915 1.06858 1.84890 1.39431 1.53861 1.32146 0.92407 0.92883 0.93352 0.93463 0.90795 0.89435 0.92299 0.86949 0.86201 0.85919 0.87282 0.82810 0.77808 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 8.57 71.98 0.62 -5.42 16 2 C 0.23 10.81 2.19 44.24 0.10 10.91 16 3 H 0.04 1.87 5.53 -2.39 -0.01 1.86 16 4 C -0.60 -32.96 8.37 25.60 0.21 -32.74 16 5 H 0.03 1.95 7.38 -2.91 -0.02 1.92 16 6 C -0.01 -0.61 5.33 84.66 0.45 -0.16 16 7 N -0.93 -57.03 13.70 21.45 0.29 -56.74 16 8 Si 1.07 50.38 26.17 68.60 1.80 52.17 16 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.24 -10.20 5.53 99.48 0.55 -9.65 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 N -0.60 -23.11 2.75 -826.79 -2.28 -25.39 16 13 C 0.08 2.39 9.11 127.77 1.16 3.55 16 14 C 0.50 18.17 7.67 87.66 0.67 18.84 16 15 O -0.59 -25.72 15.31 -3.04 -0.05 -25.77 16 16 C -0.12 -3.01 4.23 29.85 0.13 -2.88 16 17 C 0.00 -0.04 5.13 29.85 0.15 0.11 16 18 C 0.18 4.65 7.73 88.34 0.68 5.33 16 19 N -0.30 -8.89 12.21 -165.28 -2.02 -10.91 16 20 N -0.30 -8.69 12.17 -166.31 -2.02 -10.72 16 21 C 0.23 5.70 8.08 87.26 0.70 6.40 16 22 C -0.07 -1.31 5.79 -21.23 -0.12 -1.43 16 23 C -0.12 -1.68 10.03 21.48 0.22 -1.47 16 24 C -0.22 -1.82 11.19 66.67 0.75 -1.07 16 25 S 0.27 2.06 23.09 -56.49 -1.30 0.76 16 26 C -0.23 -3.09 10.72 67.01 0.72 -2.37 16 27 O -0.22 -5.64 10.85 -10.16 -0.11 -5.75 16 28 H 0.06 2.20 7.47 -2.38 -0.02 2.18 16 29 H 0.05 2.23 5.06 -2.39 -0.01 2.21 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.26 15.71 8.73 -92.70 -0.81 14.90 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 2.04 6.44 -2.39 -0.02 2.02 16 34 H 0.06 2.06 6.92 -2.38 -0.02 2.04 16 35 H 0.11 2.42 7.40 -2.39 -0.02 2.40 16 36 H 0.12 2.51 8.11 -2.38 -0.02 2.49 16 37 H 0.12 2.96 8.10 -2.39 -0.02 2.94 16 38 H 0.11 2.60 8.10 -2.38 -0.02 2.58 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.87 359.82 1.62 -73.25 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.87 Total: 11.49 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.44 Total: -2.39 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -6.02 Total: -103.75 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.16 Total: -31.52 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 1.80 Total: 52.17 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.30 Total: 0.76 kcal Total: -74.87 1.62 -73.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.196 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds