Wall clock time and date at job start Tue Mar 31 2020 19:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46772 * 2 1 4 4 C 1.50702 * 109.46952 * 240.00151 * 2 1 3 5 5 H 1.07995 * 119.99716 * 245.45968 * 4 2 1 6 6 C 1.37875 * 119.99887 * 65.45033 * 4 2 1 7 7 N 1.31514 * 120.00136 * 9.62320 * 6 4 2 8 8 Si 1.86803 * 119.99805 * 189.61745 * 6 4 2 9 9 H 1.48501 * 109.46937 * 85.00026 * 8 6 4 10 10 H 1.48505 * 109.47108 * 205.00103 * 8 6 4 11 11 H 1.48503 * 109.46925 * 324.99894 * 8 6 4 12 12 N 1.46500 * 109.46861 * 120.00347 * 2 1 3 13 13 C 1.46490 * 120.00502 * 59.99979 * 12 2 1 14 14 C 1.34784 * 119.99463 * 239.99742 * 12 2 1 15 15 O 1.21286 * 119.99977 * 359.72669 * 14 12 2 16 16 C 1.50700 * 119.99911 * 180.02562 * 14 12 2 17 17 C 1.52994 * 109.46983 * 180.02562 * 16 14 12 18 18 C 1.50700 * 109.46983 * 180.02562 * 17 16 14 19 19 N 1.30260 * 126.18301 * 89.69191 * 18 17 16 20 20 N 1.28665 * 109.56892 * 179.82637 * 19 18 17 21 21 C 1.31333 * 109.25128 * 0.43992 * 20 19 18 22 22 C 1.47697 * 126.38982 * 179.76914 * 21 20 19 23 23 C 1.39749 * 122.89230 * 359.95944 * 22 21 20 24 24 C 1.33098 * 113.73855 * 180.02562 * 23 22 21 25 25 S 1.75720 * 109.81035 * 359.97438 * 24 23 22 26 26 C 1.34693 * 122.88718 * 179.66721 * 22 21 20 27 27 O 1.34574 * 126.17933 * 269.99981 * 18 17 16 28 28 H 1.09000 * 109.47027 * 183.28986 * 1 2 3 29 29 H 1.08998 * 109.47094 * 303.28141 * 1 2 3 30 30 H 1.08994 * 109.47262 * 63.28842 * 1 2 3 31 31 H 0.96995 * 119.99711 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46998 * 269.99672 * 13 12 2 33 33 H 1.09001 * 109.47343 * 29.99572 * 13 12 2 34 34 H 1.09002 * 109.47211 * 149.99432 * 13 12 2 35 35 H 1.08998 * 109.46637 * 300.00196 * 16 14 12 36 36 H 1.08997 * 109.47015 * 59.99699 * 16 14 12 37 37 H 1.08998 * 109.47569 * 299.99594 * 17 16 14 38 38 H 1.08997 * 109.47516 * 59.99974 * 17 16 14 39 39 H 1.08001 * 123.13272 * 359.96518 * 23 22 21 40 40 H 1.08004 * 125.09146 * 179.97438 * 24 23 22 41 41 H 1.08001 * 124.74666 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7944 -0.1774 -2.4796 7 7 1.3001 1.0360 -2.5936 8 14 2.1742 -1.1788 -4.0102 9 1 1.0213 -2.0607 -4.3233 10 1 2.4213 -0.2625 -5.1525 11 1 3.3821 -2.0090 -3.7713 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0904 1.1241 1.8889 16 6 3.2961 -0.7462 3.3135 17 6 4.1454 0.2157 4.1466 18 6 4.6487 -0.4951 5.3765 19 7 5.7614 -1.1649 5.4763 20 7 5.8755 -1.6359 6.6682 21 6 4.8244 -1.2870 7.3741 22 6 4.5648 -1.6295 8.7872 23 6 5.4457 -2.3940 9.5569 24 6 5.0315 -2.5930 10.8061 25 16 3.4818 -1.8022 11.0527 26 6 3.4613 -1.2271 9.4464 27 8 4.0270 -0.5573 6.5684 28 1 -0.3633 -1.0260 0.0590 29 1 -0.3633 0.5639 0.8591 30 1 -0.3633 0.4619 -0.9179 31 1 1.1331 1.4110 -3.4723 32 1 0.7376 -2.1443 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4630 -2.5819 1.9863 35 1 2.4485 -1.0891 3.9068 36 1 3.9017 -1.6024 3.0165 37 1 4.9930 0.5590 3.5535 38 1 3.5394 1.0716 4.4437 39 1 6.3755 -2.7876 9.1737 40 1 5.5675 -3.1562 11.5557 41 1 2.6725 -0.6270 9.0174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:07 Heat of formation + Delta-G solvation = 35.298912 kcal Electronic energy + Delta-G solvation = -25203.189678 eV Core-core repulsion = 21405.186396 eV Total energy + Delta-G solvation = -3798.003282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.28790 -39.25127 -38.60316 -36.31570 -35.55097 -34.16383 -32.82446 -31.21110 -29.94294 -29.23842 -26.37858 -25.97928 -25.20861 -24.63064 -23.34471 -22.21626 -20.86525 -19.98276 -18.46356 -18.39166 -17.48742 -17.33618 -16.74893 -16.36035 -15.91036 -15.37955 -15.30499 -14.43439 -14.19949 -14.01565 -13.84123 -13.57393 -13.45269 -13.05598 -12.92240 -12.58716 -12.53676 -12.33343 -12.25778 -12.02958 -11.74457 -11.53911 -11.53410 -11.33454 -11.05624 -10.99471 -10.91991 -10.75416 -10.36029 -10.29425 -10.20449 -9.45349 -9.27115 -9.03642 -8.66654 -8.42454 -7.66843 -6.11003 -4.15868 0.09023 0.98198 0.98908 1.35344 1.91740 1.99838 2.60866 3.25655 3.27415 3.33563 3.36006 3.55663 3.94417 4.22112 4.38248 4.39605 4.62126 4.79822 4.84441 4.95581 5.06700 5.13072 5.15502 5.21527 5.38370 5.49956 5.52753 5.65644 5.70363 5.76084 5.83696 5.92090 5.97729 6.31199 6.64026 6.71583 6.94976 7.28969 7.50221 7.65997 7.89302 8.12162 8.13696 8.46239 8.80715 8.97812 9.49146 10.96407 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001935 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.174382 B =14467.273504 C =14716.446937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.071 0.929 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.507 3.493 15 O -0.551 6.551 16 C -0.138 4.138 17 C -0.010 4.010 18 C 0.181 3.819 19 N -0.282 5.282 20 N -0.272 5.272 21 C 0.216 3.784 22 C -0.037 4.037 23 C -0.096 4.096 24 C -0.230 4.230 25 S 0.208 5.792 26 C -0.217 4.217 27 O -0.220 6.220 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 -7.368 27.388 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.294 3.706 15 O -0.430 6.430 16 C -0.179 4.179 17 C -0.049 4.049 18 C -0.029 4.029 19 N -0.128 5.128 20 N -0.120 5.120 21 C 0.006 3.994 22 C -0.053 4.053 23 C -0.125 4.125 24 C -0.365 4.365 25 S 0.473 5.527 26 C -0.357 4.357 27 O -0.100 6.100 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.176 0.824 40 H 0.193 0.807 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.711 -7.032 28.014 29.010 hybrid contribution -0.059 -0.266 -1.941 1.960 sum 2.651 -7.298 26.073 27.205 Atomic orbital electron populations 1.22014 0.98562 0.98873 1.00439 1.18981 0.90426 0.95163 0.79943 0.91091 1.21257 1.36647 1.08626 0.90364 0.92170 1.24906 0.95108 0.94632 0.98994 1.69968 1.44289 1.13687 1.24140 0.86562 0.78697 0.80017 0.82449 1.20495 1.21185 1.19939 1.48214 1.48832 1.11597 1.23467 1.21643 0.98853 0.83320 1.02527 1.20060 0.79470 0.87053 0.84058 1.90679 1.58328 1.17113 1.76864 1.21692 1.00632 0.99564 0.96039 1.20040 1.02356 0.96664 0.85796 1.28265 0.89437 0.98483 0.86730 1.74413 1.16293 1.11051 1.11084 1.74765 1.19410 1.19695 0.98164 1.24838 0.87072 0.93919 0.93592 1.16240 0.97096 1.05002 0.86972 1.20081 1.00984 0.98843 0.92548 1.25676 1.00920 1.08917 1.01026 1.83249 1.17436 1.45311 1.06668 1.25366 1.02747 1.06836 1.00731 1.84880 1.46285 1.57211 1.21588 0.94946 0.96548 0.90540 0.92635 0.93815 0.89953 0.92718 0.89036 0.88289 0.85849 0.87487 0.82417 0.80718 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.12 37.16 0.34 -2.89 16 2 C 0.25 6.35 2.50 -69.08 -0.17 6.18 16 3 H 0.07 2.07 6.84 -51.93 -0.36 1.72 16 4 C -0.53 -14.11 8.01 -34.44 -0.28 -14.39 16 5 H 0.06 1.57 7.16 -52.49 -0.38 1.20 16 6 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.88 -25.08 12.17 55.43 0.67 -24.40 16 8 Si 0.90 20.86 29.55 -169.99 -5.02 15.83 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.59 -12.10 2.75 -175.26 -0.48 -12.58 16 13 C 0.08 1.29 9.16 59.84 0.55 1.84 16 14 C 0.51 9.84 7.67 -10.98 -0.08 9.75 16 15 O -0.55 -12.75 15.31 5.55 0.09 -12.66 16 16 C -0.14 -1.91 4.23 -27.89 -0.12 -2.03 16 17 C -0.01 -0.13 5.13 -27.89 -0.14 -0.27 16 18 C 0.18 2.47 7.73 -12.95 -0.10 2.37 16 19 N -0.28 -4.34 12.21 32.59 0.40 -3.94 16 20 N -0.27 -4.00 12.17 32.05 0.39 -3.61 16 21 C 0.22 2.74 8.08 -13.90 -0.11 2.63 16 22 C -0.04 -0.36 5.79 -106.72 -0.62 -0.97 16 23 C -0.10 -0.75 10.03 -40.81 -0.41 -1.16 16 24 C -0.23 -1.26 11.19 28.94 0.32 -0.94 16 25 S 0.21 1.07 23.09 -107.50 -2.48 -1.42 16 26 C -0.22 -1.64 10.72 29.48 0.32 -1.32 16 27 O -0.22 -2.85 10.85 3.56 0.04 -2.81 16 28 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 1.92 6.84 -51.93 -0.36 1.57 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.41 6.92 -51.93 -0.36 1.05 16 34 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 35 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 37 H 0.12 1.67 8.10 -51.93 -0.42 1.25 16 38 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.18 0.50 8.06 -52.48 -0.42 0.07 16 41 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -32.86 366.18 -6.55 -39.41 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.07 Total: 0.16 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.60 Total: 0.51 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.98 Total: -44.54 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.12 Total: -15.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.86 -6.55 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.706 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds